BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04040.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490075 jgi|Araly1|490075|fgenesh2_kg.6__3209__AT4G04040.1 2835 0.0
Ahg920029 jgi|Araly1|920029|scaffold_101310.1 1000 0.0
> Ahg490075 jgi|Araly1|490075|fgenesh2_kg.6__3209__AT4G04040.1
Length=1834
Score = 2835 bits (1535), Expect = 0.0
Identities = 1690/1765 (96%), Gaps = 10/1765 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCACAATTAGATTTGATCGGAGGAGACTACATCGCCGGAATTTCGA-TCAATCC 59
|||||| |||| |||||||| ||||||| |||||||||||||||||| |||| | |||||
Sbjct 1 ATGGCAGCACAGTTAGATTTAATCGGAGAAGACTACATCGCCGGAATCTCGAGT-AATCC 59
Query 60 TCCGACGAATAGCCGTGTGACTTCTGTATACAGCGAAGTCCAAGCTAGTCGTATCGACCA 119
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 TCCGGTGAATAGCCGTGTGACTTCTGTATACAGCGAAGTCCAAGCGAGTCGTATCGACCA 119
Query 120 CACACTTCCTCTTCCTTCCGTCTTTAAAAC-CCCTTTCAAGATCATCGATGGTCCTCCAA 178
||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 120 CACGCTTCCTCTTCCTTCCGTCTTTAAAACTCCC-TTCAAGATCATCGATGGTCCTCCGA 178
Query 179 GCTCCTCCGCCGGACATCCAGAGGAAATTGAGAAATTATTCCCTAATTTATTTGGACAAC 238
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 GCTCCGCCGCCGGACATCCAGAGGAAATTGAGAAATTATTCCCAAATTTATTTGGACAAC 238
Query 239 CATCAGCTTTATTGGTTCCTAACCAATCTAATGAAGTTTCATCGGA-TCAAAAGCTTAAG 297
|||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 239 CATCGGCTATATTGGTTCCTAACCAATCTAATGAAGTTTCATC-GAGTCAAAAGCTTAAG 297
Query 298 ATTGGTGTTGTGTTGTCTGGTGGTCAAGCACCTGGAGGACACAATGTTATTTGTGGAATC 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 ATTGGTGTTGTGTTGTCTGGTGGTCAAGCACCTGGAGGACACAATGTTATCTGTGGAATC 357
Query 358 TTTGATTACTTGCAAGAATATGC-AAGAGGAAGTAGTCTGTTTGGTTTTCGTGGCGGTCC 416
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 358 TTTGATTACTTGCAAGAATATGCGAA-AGGAAGTAGTCTGTTTGGTTTTCGTGGCGGTCC 416
Query 417 AGCTGGAATCATGAAGGGGAAATATATTGAGCTTACTTCTGAGTTTGTGTACCCTTATAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 AGCTGGAATCATGAAGGGGAAATATATTGAGCTTACTTCTGAGTTTGTGTATCCTTATAG 476
Query 477 AAACCAGGGTGGATTTGATATGATATGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAACCAGGGTGGATTTGATATGATATGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCA 536
Query 537 GTTTAAGCAAGCTGAAGAGACTGTTACAAAGATGGATTTAGATGGTCTTGTGGTAATTGG 596
|||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 537 GTTTCATCAAGCTGAAGAGACTGTAACAAAGATGGACTTAGATGGTCTTGTGGTTATTGG 596
Query 597 TGGAGATGACTCCAATACTAATGCTTGTCTCCTTGCTGAACACTTTAGAGCTAAAAACAT 656
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 TGGAGATGACTCCAATACTAATGCTTGTCTCCTTGCTGAACACTTCAGAGCTAAAAACAT 656
Query 657 GAAAACTCTGGTTATTGGATGCCCTAAGACAATCGATGGTGATTTAAAGAGCAAAGAAGT 716
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 GAAAACTCGGGTTATTGGGTGCCCCAAGACAATCGATGGTGATTTAAAGAGCAAAGAAGT 716
Query 717 CCCCACGAGTTTCGGGTTTGATACTGCTTGCAAGATATACTCAGAAATGATTGGAAATGT 776
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCCCGCGAGTTTCGGGTTTGATACTGCTTGCAAGATATACTCAGAAATGATTGGAAATGT 776
Query 777 TATGATCGATGCGCGTTCCACGGGAAAATACTATCACTTTGTGCGTCTTATGGGTCGTGC 836
|||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 777 TATGATCGATGCACGTTCCACCGGAAAATACTATCACTTCGTGCGTCTTATGGGCCGTGC 836
Query 837 TGCTTCTCACATTACACTTGAATGCGCTTTGCAAACCCATCCAAACATTACCATTATTGG 896
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 TGCTTCTCATATTACACTTGAATGTGCTTTGCAAACCCATCCAAACATTACCATTATTGG 896
Query 897 AGAAGAGGTTTTTGAGAAGAAGCTTACGTTGAAAAATGTTACAGATAACATTGTTGATGT 956
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 897 AGAAGAGGTTTTCGAGAAGAAGCTTACGTTGAAAAATGTTACTGATTACATTGTTGATGT 956
Query 957 GATCTATAAACGAGCAGAAAATGGTTATAACTACGGTGTCATTCTTGTTCCTGAAGGTCT 1016
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GATCTGTAAACGAGCAGAAAATGGTTATAACTACGGTGTCATTCTTGTTCCTGAAGGTCT 1016
Query 1017 AATTGATTTTATCCCTGAGGTCCAACAGCTTATTTCCGAACTGAATGAAGTCTTAGCCGA 1076
|||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||
Sbjct 1017 CATTGATTTTATCCCTGAGGTCCAAGAGCTTATATCCGAACTGAATGAAGTATTAGCAGA 1076
Query 1077 AGGAAACGTCGATGAAGAAGGCCAATGGAAGAAGAATCTTAAAAAAGAGACTTTAGAGAT 1136
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1077 AGGAAACGTCGATGAAGAAGGCCAATGGAAGAAGAATCTTAAAGAAGAGACTTTAAAGAT 1136
Query 1137 TTTTGAGTTTCTTCCTCAAACTATTCAAGAACAACTAATGCTTGAGAGAGATCCACATGG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TTTTGAGTTTCTTCCTCAAACTATTCAAGAACAACTAATGCTTGAGAGAGATCCACATGG 1196
Query 1197 AAATGTGCAGGTTGCTAAAATAGAGACAGAGAAAATGTTGATTCAAATGGTTGAAACCGA 1256
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAATGTCCAGGTTGCTAAAATAGAGACAGAGAAAATGTTGATTCAAATGGTTGAAACCGA 1256
Query 1257 GCTAGAGAAAAAGAA-GACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACT 1315
| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 GTTAGAGAAAAAGAAGGA-GGAGGGTACATACAAACGCGAGTTCATGGGGAAATCACACT 1315
Query 1316 TCTTTGGGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTACG 1375
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1316 TCTTTGGGTATGAAGGAAGATGCGGGTTACCTACGAATTTCGATGCAACTTACTGCTACG 1375
Query 1376 CATTAGGTTACGGTGCTGGATCACTTCTCCAGAGCGGAAAGACCGGATTAATTTCATCGG 1435
|||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1376 CATTAGGTTATGGTGCTGGATCACTTCTCCAGAGCGAAAAGACTGGATTAATTTCATCGG 1435
Query 1436 TTGGAAACTTGGCTGCTCCTGTTGAAGAGTGGACAGTTGGTGGTACTGCACTGACTTCGT 1495
||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1436 TTGGAAATTTGGCTGCTCCTGTTGAAGAGTGGACAGTTGGTGGTACCGCGCTGACTGCGT 1495
Query 1496 TGATGGATGTTGAGAGAAGACATGGTAAATTCAAGCCTGTTATCAAGAAAGCTATGGTTG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGATGGATGTTGAGAGAAGACATGGTAAATTCAAGCCTGTTATCAAGAAAGCTATGGTTG 1555
Query 1556 AACTTGAAGGTGCACCGTTTAAGAAATTTGCATCACAGCGAGAAGAATGGGCTTTGAAGA 1615
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1556 AACTTGAAGGTGCACCGTTTAAGAAATTTGCATCACAGCGCGAAGAATGGGCTTTGAAGA 1615
Query 1616 ATCGATACATTAGTCCTGGTCCAATTCAGTTTAAGGGACCGGGATCTGATGCGAGAAATC 1675
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1616 ATCGATACATTAGTCCTGGTCCGATTCAGTTTAAGGGACCGGGATCTGATGCGAGAAATC 1675
Query 1676 ACACATTAATGCTCGAACTCGGGGCTCAAGCCTAAAGAATTTTGGTACTGTGAGATTCAC 1735
|||| ||||||||||||||||||||||||||||||||| |||| |||| | ||||||||
Sbjct 1676 ACACCTTAATGCTCGAACTCGGGGCTCAAGCCTAAAGAGTTTTCCTACTATCAGATTCAC 1735
Query 1736 TCACTGACTCACTTTCTTTGTTGTT 1760
|||||||||||||||||||||||||
Sbjct 1736 TCACTGACTCACTTTCTTTGTTGTT 1760
Score = 69.4 bits (37), Expect = 9e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1855 ATAGATGACTCATGTGTTAATAATAAAGTTTCGCAATTTCATA 1897
||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1792 ATAGATGACACGTGTGTTAATAATAAAGTTTCGCAATTTCATA 1834
> Ahg920029 jgi|Araly1|920029|scaffold_101310.1
Length=1741
Score = 1000 bits (541), Expect = 0.0
Identities = 1304/1666 (78%), Gaps = 78/1666 (5%)
Strand=Plus/Plus
Query 76 GTGACTTCTGTATACAGCGAAGTCCAAGCTAGTCGTATCGACCACACACTTCCTCTT-CC 134
||| |||| || ||||| ||||| ||| | || |||||| || || | |||||| || ||
Sbjct 94 GTG-CTTCGGTTTACAGTGAAGTTCAATCAAGCCGTATCAACAACGCTCTTCCT-TTGCC 151
Query 135 TTCCG-TCTTTAAAACCCCTTTCAAGATCATCGATGGTCCTCCAAGCTCCTCCGCC-GGA 192
||| | || ||||| ||||||| ||| |||| |||||| | || ||| ||||| |||
Sbjct 152 TTCTGTTC-TTAAAGGAGCTTTCAAAATCGTCGAAGGTCCTGCTAGTTCCGCCGCCGGGA 210
Query 193 CATCCAGAGGAAATTGAGAAATTATTCCCTAATTTATTTGGACAACCATCAGCT-TTATT 251
|||||||||| || | ||| || || || | ||| ||| || ||||| | | | |
Sbjct 211 -ATCCAGAGGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCATCTG-TAGCAGT 268
Query 252 GGTTCCTAACCAATCTA-A-TG-AAGTTTCATCGG-ATCAAAAGCTT-AAGATTGGTGTT 306
|||||| | ||| | | || | ||| ||||| | | ||| || ||||||||||||
Sbjct 269 GGTTCC--A--GATC-AGAGTGCATCTTT-ATCGGCACCGAAA--TTGAAGATTGGTGTT 320
Query 307 GTGTTGTCTGGTGGTCAAGCACCTGGAGGACACAATGTTATTTGTGGAATCTTTGATTAC 366
|| |||||||| ||||| || ||||| || ||||||||||| | |||| | |||||||||
Sbjct 321 GTTTTGTCTGGAGGTCAGGCGCCTGGTGGGCACAATGTTATATCTGGACTGTTTGATTAC 380
Query 367 TTGCAAGAATATGC-AAGAGGAAGTA-GTCTGTT--TGGTTTTCGTGGCGGTCCAGCTGG 422
||||||| ||| || ||| |||| || | || |||| | || |||||||||||
Sbjct 381 CTGCAAGAGCGTGCGAA-AGGTAGTACGT-T-TTACGGGTTCAAG-GGTGGTCCAGCTGG 436
Query 423 AATCATGAAGGGGAAATATATTGAGCTT-ACTTCTGAGTTTGTGT-ACCCTTATAGAAAC 480
|||||||| | |||||| ||||| || | | |||| | | | | | ||||| ||||||
Sbjct 437 TATCATGAAATGCAAATATGTTGAG-TTGAATGCTGAATATAT-TCATCCTTACAGAAAC 494
Query 481 CAGGGTGGATTTGATATGATATGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCAGTTT 540
|||||||| ||||| ||||| || ||||||||||||||||||||||| || || |||||
Sbjct 495 CAGGGTGGTTTTGACATGATCTGCAGTGGAAGAGACAAGATTGAAACACCTGACCAGTTC 554
Query 541 AAGCAAGCTGAAGAGACTGTTACA-AAGATGGATTTAGATGGTCTT-GTGGTAATTGGTG 598
|| ||||||||||| || | | | ||| | ||||| ||||| || || || || ||||
Sbjct 555 AAACAAGCTGAAGAAACAG-CAAAGAAGCTAGATTTGGATGG-ATTGGTTGTTATCGGTG 612
Query 599 GAGATGACTCCAATACTAATGCTTGTCTCCTTGCTGAACACTTTA-GAGCTAAAAACATG 657
||||||||||||| || ||||||||||||||||||||| |||| | ||| ||| ||| ||
Sbjct 613 GAGATGACTCCAACACCAATGCTTGTCTCCTTGCTGAAAACTTCAGGAG-TAAGAACTTG 671
Query 658 AAAACTCTG-GTTATTGGATGCCCTAAGACAATCGATGGTGATTT-AAAGAGCAAAGAAG 715
||||| | | || ||||| ||||| ||||| || ||||||||||| ||| ||||||| |
Sbjct 672 AAAAC-CCGAGTCATTGGTTGCCCCAAGACCATTGATGGTGATTTGAAA-TGCAAAGAGG 729
Query 716 TCCCCACGAGTTTCGGGTTTGATACTGCTTGCAAGATATACTCAGAAATGATTGGAAATG 775
| || || ||||| |||||||| || ||||||||||| ||||| ||||||||||||||||
Sbjct 730 TTCCTACTAGTTTTGGGTTTGACACAGCTTGCAAGATTTACTCTGAAATGATTGGAAATG 789
Query 776 TTATGATCGATGCGCGTTCCACGGGAAAATACTATCACTTTGTGCGTCTTATGGGTCGTG 835
| ||||| ||||| | || || ||||| |||||||| ||||| ||||||||||||||||
Sbjct 790 TCATGATTGATGCAAGGTCAACTGGAAAGTACTATCATTTTGTACGTCTTATGGGTCGTG 849
Query 836 CTGCTTCTCACATTACACTTGAATGCGCTTTGCAAACCCATCCAAACATTACCATTATTG 895
||||||| |||||||| ||||| || ||||| ||||| || |||||||| || |||||||
Sbjct 850 CTGCTTCCCACATTACGCTTGAGTGTGCTTTACAAACTCACCCAAACATAACAATTATTG 909
Query 896 GAGAAGAGGTTTTTGAGAAGAAGCTTACGTTGAAAAATGTTACAGA-TAACATTGTTGAT 954
|||||||||||| || |||||| || ||||| ||||| ||||| | |||| || |||
Sbjct 910 GAGAAGAGGTTTCTGCCCAGAAGCAGACTTTGAAGAATGTCACAGACT-ACATGGTAGAT 968
Query 955 GTGATCTATAAACGAGCAGAAAATGGTTATAACTACGGTGTCATTCTTG-TTCCTGAAGG 1013
|| |||| ||||| || ||| |||||| |||||||||||||| | || | || |||||
Sbjct 969 GTTATCTGCAAACGTGCTGAACTTGGTTACAACTACGGTGTCATAC-TGATCCCAGAAGG 1027
Query 1014 TCTAATTGATTTTATCCCTGAGGTCCAACAGCTTATTTCCGAACTGAATG-AAGTCTTAG 1072
|| || || ||||| |||||||||||| |||| ||| | |||||||||| || || | |
Sbjct 1028 CCTGATCGACTTTATTCCTGAGGTCCAAGAGCTGATTGCAGAACTGAATGAAATTC-T-G 1085
Query 1073 CCGAAGGA-AACGTCGATGAAGAA-GGCCAATGGAAGAAGAATCTTAAAAAAG--AGACT 1128
| || || ||||||||| || || | ||||||||||| | | | || | |
Sbjct 1086 GCAAATGAGGTTGTCGATGAA-AATGGTCTGTGGAAGAAGAAGC-TCACCGAGCAATCCC 1143
Query 1129 TTAGAGATTTTTGAGT-TTCTTCCTCAAACTATTCAAGAACAACTAATGCTTGAGAGAGA 1187
| | || | ||||| | |||| ||| || | ||||| ||||| || ||||||||||||||
Sbjct 1144 TGA-AGCTGTTTGA-TCTTCTGCCTGAAGCAATTCAGGAACAGCTGATGCTTGAGAGAGA 1201
Query 1188 TCCACATGGAAATGTGCAGGTTGCTAAAATAGAGACAGAGAAAATG-TTGATTCAAATGG 1246
||||| |||||||| ||||| ||||| || ||||| ||||| ||| || ||||||||||
Sbjct 1202 CCCACACGGAAATGTCCAGGTGGCTAAGATTGAGACTGAGAAGATGCTT-ATTCAAATGG 1260
Query 1247 TTGAAACCGAGCTAGAGAAAAAG-AAGAC-AGAGGGTACATATGAACGCG--AGTTCATG 1302
||||||| || | ||| ||||| ||| | || ||| |||| || | | | |||||
Sbjct 1261 TTGAAACTGAATTGGAG-AAAAGAAAG-CAAGCTGGTGCATA-CAA-GGGACAATTCAT- 1315
Query 1303 GGGA-AATCACACTTCTTTGGGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGC 1361
|||| |||| || |||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 1316 GGGACAATCTCATTTCTTTGGCTATGAAGGAAGATGCGGCTTGCCCACAAATTTTGATGC 1375
Query 1362 AACTTACTGCTACGCATTAGGTTACGGTGCTGGA-TCACTTCTCCAGAGCGGAAAGACCG 1420
|| ||||| || ||| | || || || |||||| | ||| ||| | || || ||||| |
Sbjct 1376 CACATACTGTTATGCACTCGGCTATGGCGCTGGAGT-ACTCCTCAACAGTGGGAAGACTG 1434
Query 1421 GATTAATTTCATCGGTTGGAAACTTGGCTGCTCCTGTTGAAGAGTGGACAGTTGGTGGTA 1480
|| ||||||| ||||| || ||||||||||||||||| ||||| ||||| || ||||| |
Sbjct 1435 GACTAATTTCTTCGGTCGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGA 1494
Query 1481 CTGCACTGACTTCGTTGATGGATGTTGAGAGAAGACATGGTAAATTCAAGCCTGTTATCA 1540
|||| || || | ||||||||||| ||||| ||||| ||||| ||||||||||| ||||
Sbjct 1495 CTGCTCTCACAGCCTTGATGGATGTCGAGAGGAGACACGGTAAGTTCAAGCCTGTGATCA 1554
Query 1541 AGAAAGCTATGGTTGAACTTGAAGGTGCACCGTTTAAGAAATTTGCATCACAGCGAGAAG 1600
||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| || |
Sbjct 1555 AGAAAGCAATGGTGGAACTTGAAGGTGCACCGTTTAAGAAATTTGCATCGCTGCGTGAGG 1614
Query 1601 AATGGGCTTTGAAGAATCGATACATTAGTCCTGGTCCAATTCAGTTTAAG-GGACCGGGA 1659
||||||| ||||| || |||||||| || || ||||| || || || | | ||||| ||
Sbjct 1615 AATGGGCATTGAATAACCGATACATCAGCCCAGGTCCGATCCAATTCA-GTGGACCTGGT 1673
Query 1660 TCTGATGCGAGAAATCACACAT-TAATGCTCGAACTCGGGGCTCAA 1704
|| || || | ||||| | || | || |||||||||||||||
Sbjct 1674 TCAGACGCTCTCAGCCACAC-TCTACTTCTTGAACTCGGGGCTCAA 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5