BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04080.1
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943199 jgi|Araly1|943199|scaffold_603743.1 584 2e-166
> Ahg943199 jgi|Araly1|943199|scaffold_603743.1
Length=501
Score = 584 bits (316), Expect = 2e-166
Identities = 464/530 (88%), Gaps = 32/530 (6%)
Strand=Plus/Plus
Query 9 ATAGAGAGAAG-CGATCGATCATGTTAAGGCAAACAACTAAAAGAGCCTTTT-TAGGGCT 66
|||||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1 ATAGAGAG-AGACGATCGATCATGTTAAGGCAAACAACTAAAAGA-ACTTTTCTAGGGCT 58
Query 67 CGCTTCTCA-AAATCCCACACCGTTCCCTGTCGTGTCTCGATTATACCATCCAAATGTCA 125
|||||| | |||| ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 59 CGCTTC-AAGAAATTCCACACCGTTCCCTGTCGTATCTCGATCGTACCATCCAAATGTCG 117
Query 126 TCGACCATTATGACAATCCCCGTAACGTTGGATCATTTGATAAGAATGATCCTAACGTTG 185
||||||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 118 TCGACCATTATGATAATCCCCGTAACGTTGGATCATTCGATAAGAGTGATCCAAACGTTG 177
Query 186 GTACGGGATTGGTCGGAGCTCCTCAATGTGGAGATGTTATGAAGCTTCAGGTTAAGTTTG 245
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 178 GTACGGGATTGGTCGGAGCTCCTCAATGTGGAGATGTAATGAAACTTCAGGTTAAGTTTG 237
Query 246 ATGGTTCTGGTCAAATCATTGATGCTAAATTCAAGACCTTTGGTTGTGGTTCTGCCATAG 305
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 238 ATGGTTCTGGTCAAATCATTGATGCTAAATTCAAAACCTTTGGTTGTGGTTCCGCCATTG 297
Query 306 CAGCTTCTTCCGTCGCTACTGAATGGGTCAAGGGAAAATCCGTGGAGGAAGTCTTGACCA 365
||||||| ||| | ||||||||||||||||||| |||||||||| | | | |
Sbjct 298 CAGCTTCCTCC--C--TACTGAATGGGTCAAGGGATAATCCGTGGA--A-G-----A--A 343
Query 366 TAAAGAACTCGCAAATTGCGAAGCATCTATCGTTGCCACCAGTAAAGCTACATTGCAGTA 425
| | ||||||| |||||||||||||||||||||||||| |||| ||| ||||
Sbjct 344 ----G--C----AAATTGCAAAGCATCTATCGTTGCCACCAGTAAAACTACTTTGTAGTA 393
Query 426 TGCTTGCAGAAGACGCTATCAAGGCAGCAATTAAAAACTACAAGGAGAAGCAAGACAAGG 485
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||
Sbjct 394 TGCTTGCAGAAGACGCTATCAAGGCAGCGGTTAAAAACTACAAGCAGAAGCAAGCCGAGG 453
Query 486 CTAATGGCGAAACCGTTGAAACCATCGATTCCACTTATTTACACGGTATT 535
||||| | |||||||| || || | ||||||||| ||||||| ||||||
Sbjct 454 CTAATAGTGAAACCGTCGAGGCC-T-GATTCCACTCATTTACAAGGTATT 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24169929378
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5