BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04180.1
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943201 jgi|Araly1|943201|scaffold_603745.1 2531 0.0
> Ahg943201 jgi|Araly1|943201|scaffold_603745.1
Length=1849
Score = 2531 bits (1370), Expect = 0.0
Identities = 1574/1669 (94%), Gaps = 28/1669 (2%)
Strand=Plus/Plus
Query 16 AATTGTGTAAAACCACTCCAATGGCGATTCTGGACAAATTGTTTCGAGCATCTCGAGCAT 75
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AATTGTGTAAAACTACTCCAATGGCGGTTCTGGACAAATTGTTTCGAGCATCTCGAGCAT 60
Query 76 GGCGCGGATCACTCTCTCATTCTAAATCCATGGTTCCTTCGCAATCACCACGGGCACGAG 135
||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||
Sbjct 61 GGCGCGGATCACTCTCTCATTCTAAATCCATGGCTCCATCGC-A--ACCACGGGCACGAG 117
Query 136 AGCTTCGTCGCTGTTTCCACCA-CGGAAACTTTGAGCAGAGTAATTCAAAAGTAAATCAA 194
||||||||||||||||| | | ||||| |||||| ||||| ||||||||||||||||||
Sbjct 118 AGCTTCGTCGCTGTTTCTA-TAGCGGAACCTTTGATCAGAGCAATTCAAAAGTAAATCAA 176
Query 195 GTCTTGAGATCTTGCAGCACCCTAAACGATTCTCCATACTTTTCCATGGCACCTGCAGTT 254
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 177 GTATTGAGATCTTGCAGCACCATAAACGATTCTCCATACTTTTCCATAGCACCTGCAGTT 236
Query 255 TTGGGTGCTCTCTTTAGCGTTGGAG-TAATTGGAGTAGCTTATGCTGAATCTGATGAGG- 312
|||||||||||||| || ||||||| | || ||||||||||||||||||||||||||||
Sbjct 237 TTGGGTGCTCTCTTCAGTGTTGGAGCT-ATAGGAGTAGCTTATGCTGAATCTGATGAGGT 295
Query 313 --CTAATAATGA--CAAG--T----CTT--CTGCCCCAATAGATCCTAATGACGAAACGT 360
| || ||| | || | ||| || | || | | |||||||| || ||
Sbjct 296 TTTTTTTACTGATTCTAGTTTAAAACTTACCTTCTTGAA-GGCTACTAATGAC--AA-GT 351
Query 361 CATCTGCCCCAATAGATCCTCCACCAAACTATGTAGACATTGCCAAGAAAGAACGAGCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CATCTGCCCCAATAGATCCTCCACCAAACTATGTAGACATTGCCAAGAAAGAACGAGCTC 411
Query 421 GAGTTGAAGAACTTATA-CAAAGTAAAGGAACTCAATATGGTTCTTACCCACGGTTCAAT 479
|| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GAATTGAAGAACTGATATC-AAGTAAAGGAACTCAATATGGTTCTTACCCACGGTTCAAT 470
Query 480 GTTGCTGTAAGAGGTCAAAAGATTACGTTGAAGTTCCAAGTTCCTTCTACTTGTGAAGTC 539
|||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 471 GTTGCTGTCAGGGGTCAAAAGATTACCTTGAAGTTCCAAGTTGCTTCTACTTGTGAAGTC 530
Query 540 GCACAATTAATATCAAACATTGGATCCCAACTAGGTGTGAAAGTCTCAGATCGTACTGGT 599
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 531 GCACAGTTGATATCAAACATTGGATCCCAACTAGGTGTGAAAGTCTCAGATCGCACTGGT 590
Query 600 GGTTCAGATATGCTATTGCGTGCTTGGGACAATCCAGTCGCTTGGCAAATAACACTTCGC 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GGTTCTGATATGCTATTGCGTGCTTGGGACAATCCAGTCGCTTGGCAAATAACACTTCGC 650
Query 660 AGTGTGGAAAACAAGAAGAAACTTGGAGAGAGTGAAGATGATTCAGATGATGACTTGTGC 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 651 AGTGTGGAAAACAAGAAGAAACTAGGAGAGAGTGAAGATGATTCAGATGATGACTTGTGC 710
Query 720 ATTCTTATCTTTGGTTCCTTACTTACCTCGGATAAAGTGGAAGTTGAGTTTATAAAGAAG 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATTCTTATCTTCGGTTCCTTACTTACCTCGGATAAAGTGGAAGTTGAGTTTATAAAGAAG 770
Query 780 GGAAGTTTGACTACTGAAGAACTTGAGGCTTTTGTTTCAGCTTTGGGAGTAGCTGGAACA 839
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 771 GGAAGTTTGACCACTGAAGAACTTGAGGCTTTTGTTTCAGCTTTGCGAGTAGCTGGAACA 830
Query 840 AAAGCTGGACAAAATAAGGGAAGCGGCAG-TAGAGGAAGCACTCGTGATTCGTCTACAGA 898
||||||||||||||||||||| | || || |||||| ||| ||||||| |||||||| ||
Sbjct 831 AAAGCTGGACAAAATAAGGGAGGTGG-AGTTAGAGGTAGCGCTCGTGAATCGTCTACCGA 889
Query 899 CAAATCTATCTCCCAGTTGGAGTCTATGGGAGTCAGAATCTATGGAGTTAATAAACCTCT 958
||||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 890 AAAATCTATCTCTCAATTGGAGTCTATGGGAGTGAGAATCTTTGGAGTTAATAAACCTCT 949
Query 959 TGGGGATGATTCTATGGATGAGATATCATGGGACAATATTGCTGGATATGATCAGCAAAA 1018
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TGGGGATGATTCTGTGGATGAGATATCATGGGACAATATTGCTGGATATGATCAGCAAAA 1009
Query 1019 GCGAGAGATAGAAGATACAATATTGATGGCTCTTCATAGTCCTGAAGTGTATGATGATAT 1078
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 GCGAGAGATAGAAGATACAATATTGATGGCCCTTCATAGTCCTGAAGTGTATGATGATAT 1069
Query 1079 TGTACGTGGTACACGGTCCAAATTTGAATCCAACAGACCTCGGGCTGTTCTATTTGAGGG 1138
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1070 AGTACGTGGTACACGGTCCAAATTTGAATCAAACAGACCTCGGGCTGTTCTATTTGAGGG 1129
Query 1139 TCCACCAGGAACTGGGAAGACATCTTGTGCGCGTGTTATTGCTAATCAGGCGGGCATACC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TCCACCAGGAACTGGGAAGACATCTTGTGCGCGTGTTATTGCTAATCAGGCGGGCATACC 1189
Query 1199 ATTGTTGTATGTGCCGCTTGAAGCTGTAATGTCTAAGTACTATGGTGAAAGCGAGCGTCT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 GTTGTTGTATGTGCCGCTTGAAGCTGTAATGTCTAAGTACTATGGTGAAAGCGAGCGGCT 1249
Query 1259 TCTTGGGGCTGTGTTTTCTCAAGCAAATGAGCTCCCTGATGGTGCGATTATATTTCTTGA 1318
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1250 TCTTGGGGATGTGTTTTCTCAAGCAAATGAGCTCCCTAATGGTGCGATTATATTTCTTGA 1309
Query 1319 TGAGATTGATGCATTTGCTATCTCTCGTGATAGTGAGATGCATGAAGCAACGCGTAGAGT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TGAGATTGATGCATTTGCTATCTCTCGTGATAGTGAGATGCATGAAGCAACGCGTAGAGT 1369
Query 1379 TTTGTCGGTACTACTAAGGCAGATTGATGGATTTGAACAAGaaaaaaaaGTGGTTGTGAT 1438
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1370 TTTGTCGGTACTACTAAGGCAGATTGATGGATTTGAACAAGACAAAAAAGTGGTTGTGAT 1429
Query 1439 TGCTGCAACCAATAGAAAACAAGATCTTGATCCCGCTTTGATCAGCCGGTTCGATTCCAT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TGCTGCAACCAATAGAAAACAAGATCTTGATCCCGCTTTGATCAGCCGGTTCGATTCCAT 1489
Query 1499 GATCATGTTTGACTTACCGGATTTACAAACTCGTCAAGAAATCATCGCTCAATACGCAAA 1558
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1490 GATCATGTTTGACTTACCGGACTTACAAACTCGTCAAGAAATCATCGCCCAATATGCAAA 1549
Query 1559 ACAACTCTCAAAGCCTGAACTAGTCCAGCTTGCTCAAGCCACAGAAGCAATGTCAGGCAG 1618
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1550 GCAACTCTCAAAGCCTGAACTAGTCCAGCTTGCTCAGGCCACAGAAGCAATGTCAGGCAG 1609
Query 1619 AGATATTCGAGATGTATGTCAAGGAGCAGAACGAACATGGGCTTCAAAG 1667
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GGATATTCGAGATGTATGTCAAGGAGCAGAACGAACATGGGCTTCAAAG 1658
Score = 244 bits (132), Expect = 2e-63
Identities = 162/177 (92%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 1693 AGTTGATTCGTCGAGCAAAAGCCGGTGGAGAAGAACAAAAGATCACTCTTCCTCCAATAC 1752
|||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 1657 AGTTGATTCGTCGAGCAAAAGCGGGTGGAGAAGAACGAAAGATCACTCTCCCTCCAATAC 1716
Query 1753 AAGAGTACTTGGAAAGCGCTGAAGCTCGGCGCAAATCTCTTCGTAGTGTCACGGAGCAGA 1812
|||||||||||||||||||||| |||||||||||| |||||| |||||| || |||||||
Sbjct 1717 AAGAGTACTTGGAAAGCGCTGAGGCTCGGCGCAAAGCTCTTCTTAGTGTAACAGAGCAGA 1776
Query 1813 AGGAACAGAAATTTGCTGCTCGCTCCAAGAAACCTCTGCTTGATTTTGAGTGACAAT 1869
| |||| |||||| |||||||| |||||||||||||| || |||||||||||| |||
Sbjct 1777 AAGAACCGAAATTCGCTGCTCGTTCCAAGAAACCTCTACTAGATTTTGAGTGATAAT 1833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82198748710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5