BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04190.1 Length=819 Score E Sequences producing significant alignments: (Bits) Value Ahg490077 jgi|Araly1|490077|fgenesh2_kg.6__3211__AT4G04190.1 1018 0.0 > Ahg490077 jgi|Araly1|490077|fgenesh2_kg.6__3211__AT4G04190.1 Length=730 Score = 1018 bits (551), Expect = 0.0 Identities = 682/739 (92%), Gaps = 33/739 (4%) Strand=Plus/Plus Query 90 TTGGTTTGTTCTTCAGTTCTTGAAGTGATTTGATACGGAGCAGTCATGGATGTTGATTCA 149 ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 TTGGTCTGTTCTTCAGTCCTTGAAGTGATTTGATACGGAGCCGTCATGGATGTTGATTCT 60 Query 150 CAACCAATGATGGAGGAGACTATACTGGTCGGTGATGACCTAATGACGGGTCCTCCATCT 209 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAACCAATGATGGAGGAGACCATACTGGTCGGTGATGACCTAATGACGGGTCCTCCATCT 120 Query 210 CCTGTTATCCCTCCTGAAATTGCTTCACATGTGCTTGAAGGTGTTGATTTGTGCGATGGG 269 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 121 CCTGTCATCCCTCCTGAAATTGCTTCACATGTGCTTGAAGGTGTTGAATTGTGTGATGGG 180 Query 270 ATTTTGAGGAATCTATTCCTGTGTTTGCAAATCAATGATATTGAACCATTTTGCCAAGAT 329 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 181 ATTTTGAGGAATCTATTCCTATGCTTGCAAATCAATGATATTGAACCATTTTGCCAAGAT 240 Query 330 GAGCTTGCATTGTATCGACAATGTGCTGAAAAGAGGGACAAAATATTGAGAGTTAGACTT 389 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 241 GAGCTTGCCTTGTATCGACAATGTGCTGAAAAGAGGGACAAGATATTGAGAGTAAGACTT 300 Query 390 CAAGAGAGCGAACACAAGTTAGGATTGTCTATGCCCATTGAACTCGCTAAGGAAAGGATT 449 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAGGAGAGCGAACACAAGTTAGGATTGTCTATGCCCATTGAACTCGCTAAGGAAAGGATT 360 Query 450 ACGCAGCTTGAAGCTGAAGCCACATCTTTTGAGAGGCACTTGATTCTAGCAAGTGGAGCT 509 |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 361 ACGCAGCTTGAAGCTGAAGCCACATCACTAGAGAGGCACTTGATTCTAGCAAGTGGAGCT 420 Query 510 GAAGGAATAGAAGGATTTCGCCGGAGATGGAGTTTACACGGTCGGATGACGGATACCaaa 569 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 GAAGGAATTGAAGGATTTCGCCGGAGATGGAGTTTGCACGGTCGGATGACGGATACCAAA 480 Query 570 aaaaGACTGGAGTCACTGAAGCAGGGAATGGAGAACAGGAACAAGGTTGAACATGAACAT 629 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 481 AAAAGACTGGAGTCACTGAAGCTGGGAATGGAGAACAGGAACAAGGATGAACATGAACAT 540 Query 630 AACCA-A-C-A---CCAT------GATCAGTCCCCAAAACCTTCTGCTCCAAAAAGATGG 677 ||||| | | | |||| |||||||||||||||||||||||||| ||||||||| Sbjct 541 AACCATAACCATAACCATAACCATGATCAGTCCCCAAAACCTTCTGCTCCCAAAAGATGG 600 Query 678 TTCTTTTGGTGATTTCCATATTGAATCATGTTTTGGATCATAAAAGGTTCATAATCATTA 737 |||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 601 TTCTTTTGGTGA-----AT---GAATCATGTTTTGGATCATAAAAGGTTCATAATCATTA 652 Query 738 CACTTAT---GGTGCAG---C-----AATGTAACCACTTTTAGCTATTAAAAGTA-ACAT 785 ||||||| ||||||| | |||||||||||||||||| |||||||||| | || Sbjct 653 CACTTATTATGGTGCAGGTGCTTCCCAATGTAACCACTTTTAGCAATTAAAAGTATA-AT 711 Query 786 TAAAAATCTAAAAAGTTTT 804 ||||||||||||| ||||| Sbjct 712 TAAAAATCTAAAATGTTTT 730 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30269596098 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5