BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04190.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490077 jgi|Araly1|490077|fgenesh2_kg.6__3211__AT4G04190.1 1018 0.0
> Ahg490077 jgi|Araly1|490077|fgenesh2_kg.6__3211__AT4G04190.1
Length=730
Score = 1018 bits (551), Expect = 0.0
Identities = 682/739 (92%), Gaps = 33/739 (4%)
Strand=Plus/Plus
Query 90 TTGGTTTGTTCTTCAGTTCTTGAAGTGATTTGATACGGAGCAGTCATGGATGTTGATTCA 149
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TTGGTCTGTTCTTCAGTCCTTGAAGTGATTTGATACGGAGCCGTCATGGATGTTGATTCT 60
Query 150 CAACCAATGATGGAGGAGACTATACTGGTCGGTGATGACCTAATGACGGGTCCTCCATCT 209
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACCAATGATGGAGGAGACCATACTGGTCGGTGATGACCTAATGACGGGTCCTCCATCT 120
Query 210 CCTGTTATCCCTCCTGAAATTGCTTCACATGTGCTTGAAGGTGTTGATTTGTGCGATGGG 269
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 121 CCTGTCATCCCTCCTGAAATTGCTTCACATGTGCTTGAAGGTGTTGAATTGTGTGATGGG 180
Query 270 ATTTTGAGGAATCTATTCCTGTGTTTGCAAATCAATGATATTGAACCATTTTGCCAAGAT 329
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTTGAGGAATCTATTCCTATGCTTGCAAATCAATGATATTGAACCATTTTGCCAAGAT 240
Query 330 GAGCTTGCATTGTATCGACAATGTGCTGAAAAGAGGGACAAAATATTGAGAGTTAGACTT 389
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 GAGCTTGCCTTGTATCGACAATGTGCTGAAAAGAGGGACAAGATATTGAGAGTAAGACTT 300
Query 390 CAAGAGAGCGAACACAAGTTAGGATTGTCTATGCCCATTGAACTCGCTAAGGAAAGGATT 449
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGGAGAGCGAACACAAGTTAGGATTGTCTATGCCCATTGAACTCGCTAAGGAAAGGATT 360
Query 450 ACGCAGCTTGAAGCTGAAGCCACATCTTTTGAGAGGCACTTGATTCTAGCAAGTGGAGCT 509
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 361 ACGCAGCTTGAAGCTGAAGCCACATCACTAGAGAGGCACTTGATTCTAGCAAGTGGAGCT 420
Query 510 GAAGGAATAGAAGGATTTCGCCGGAGATGGAGTTTACACGGTCGGATGACGGATACCaaa 569
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GAAGGAATTGAAGGATTTCGCCGGAGATGGAGTTTGCACGGTCGGATGACGGATACCAAA 480
Query 570 aaaaGACTGGAGTCACTGAAGCAGGGAATGGAGAACAGGAACAAGGTTGAACATGAACAT 629
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 481 AAAAGACTGGAGTCACTGAAGCTGGGAATGGAGAACAGGAACAAGGATGAACATGAACAT 540
Query 630 AACCA-A-C-A---CCAT------GATCAGTCCCCAAAACCTTCTGCTCCAAAAAGATGG 677
||||| | | | |||| |||||||||||||||||||||||||| |||||||||
Sbjct 541 AACCATAACCATAACCATAACCATGATCAGTCCCCAAAACCTTCTGCTCCCAAAAGATGG 600
Query 678 TTCTTTTGGTGATTTCCATATTGAATCATGTTTTGGATCATAAAAGGTTCATAATCATTA 737
|||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTTTTGGTGA-----AT---GAATCATGTTTTGGATCATAAAAGGTTCATAATCATTA 652
Query 738 CACTTAT---GGTGCAG---C-----AATGTAACCACTTTTAGCTATTAAAAGTA-ACAT 785
||||||| ||||||| | |||||||||||||||||| |||||||||| | ||
Sbjct 653 CACTTATTATGGTGCAGGTGCTTCCCAATGTAACCACTTTTAGCAATTAAAAGTATA-AT 711
Query 786 TAAAAATCTAAAAAGTTTT 804
||||||||||||| |||||
Sbjct 712 TAAAAATCTAAAATGTTTT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5