BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04200.1
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490079 jgi|Araly1|490079|fgenesh2_kg.6__3213__AT4G04200.1 911 0.0
> Ahg490079 jgi|Araly1|490079|fgenesh2_kg.6__3213__AT4G04200.1
Length=609
Score = 911 bits (493), Expect = 0.0
Identities = 548/575 (95%), Gaps = 2/575 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAAGAAGACAGAATCCGCGACTAAGAACGTTAAAAAGGTTAACTTGTTAGAC 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAGAAGAAGACAGAATCTGCGACTAAAAACGTTAAAAAGGTTAACTTGTTAGAC 60
Query 61 CACATCGCAATCAAACACCTCCTTGATGAATCCGTCTCCGATATCGTTACGAGCAGAGGG 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACAACGCTATCAAACACCTCCTTGATGAATCCGTCTCCGATATCGTTACGAGCAGAGGG 120
Query 121 TACAAGGAGGATGTGAGATTAAGCAACGTCAAATTTCTGTTAGGAGGGATTATAATCGTG 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 121 TACAAGGAGGATGTGAGATTAAGCAACGTCAAATTTCTGTTAGGAGCGATTATAATTGTG 180
Query 181 GTTGCTCTTGTTGCTCAATTCTACAACAAGAAATGTGGGATTTGTTTGCTTCTTGACTTT 240
|| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 181 GTGGCTCTTGTTGCTCAATTCTACAATAAGAAATGTGGGATTTGTTTGATTCTTGACTCT 240
Query 241 GGCAAGTATGTGGTGTTGACTGCGGTAATGCAGCTGATTCTGTACATTAAGGAGAAGAAC 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GGCAAGTATGTGGTGTTGACTGCGGTAATGCAGCTGATTCTGTTCATTAAGGAGAAGAAC 300
Query 301 GCTATCTTGTTCACCTATCCTCTTGAGGGATCATTCACCAGCACTGGTTTGGTGGTATCT 360
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCCATCTTGTTCACCTATCCTTTTGAGGGATCATTCACCAGCACTGGTTTGGTGGTATCT 360
Query 361 TCCAAGTTACCTAGATTCTCTGATCAGTACACTCTAACCATCGACAGTGCTGATCCGCAA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 361 TCCAAGTTACCTAGATTCTCTGATCAGTACACTCTCACCATCGACAGTGCTGATCCGAAA 420
Query 421 TCAATCTCAGCTGGGAAGTCGGTTCAGTTCACCAAAAGTGTCACTCAATGGCTCACAAAA 480
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TCAATCTCAGCTGGGAAGTCAGTTCAGTTCACCAAGAGTGTCACTCAATGGCTCACAAAA 480
Query 481 GATGGAGTTCTTGTCGAGGGTTTATTCTGGAAAGATGTTGAAGCCCTAGTCAAAGAGTAC 540
|||||||||||||| || ||||| ||||||||||||||||| |||||| |||| ||||||
Sbjct 481 GATGGAGTTCTTGTTGAAGGTTTGTTCTGGAAAGATGTTGATGCCCTAATCAAGGAGTAC 540
Query 541 A-CAGAAGCAGGAGAACCAAAGAAGAAGAGATGAT 574
| | ||||||| ||||||||||||||||| |||||
Sbjct 541 AAC-GAAGCAGAAGAACCAAAGAAGAAGAAATGAT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25161125220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5