BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04210.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490080 jgi|Araly1|490080|fgenesh2_kg.6__3214__AT4G04210.1 1474 0.0
Ahg492650 jgi|Araly1|492650|fgenesh2_kg.7__2083__AT4G22150.1 568 4e-161
> Ahg490080 jgi|Araly1|490080|fgenesh2_kg.6__3214__AT4G04210.1
Length=1055
Score = 1474 bits (798), Expect = 0.0
Identities = 977/1061 (92%), Gaps = 21/1061 (2%)
Strand=Plus/Plus
Query 63 AAAAAACACAATGTCTTCGAAAGACAAGAAACCGTCGAAG-CCATCGAGTAGTCGTGGTG 121
|||||| | ||||||||||||||||||||||||| || || ||||||| |||||||||||
Sbjct 1 AAAAAAGAGAATGTCTTCGAAAGACAAGAAACCGGCG-AGACCATCGACTAGTCGTGGTG 59
Query 122 GAATCCGAACTCTTTCCGATCTTAACCGTAGGTCTGGTCCTGACTCCGACAGTGATTCCG 181
|| |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 60 GAGTCCGAACTCTTTCCGATCTTAATCGTAGGTCTGGTCCAGATTCCGACAGTGATTCCG 119
Query 182 ATGGTCCACAAGAATACTACACAGGTGGTGAGAA-AAGTGGTATG-TTAGTTCAAGATCC 239
|||| || |||||||||||||| || ||||| || |||||||||| || |||||||||||
Sbjct 120 ATGGACCTCAAGAATACTACACCGGCGGTGA-AAGAAGTGGTATGCTT-GTTCAAGATCC 177
Query 240 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAGA 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 178 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAATTAGGAGCTGTGGA 237
Query 300 AGGACCTCTTGAGCCACCTCCGAGTTCCAGGAGTTTCACTGGAACTGGTAGATTGCTTTC 359
||||||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| ||
Sbjct 238 AGGACCTCTTGAGCCTCCTTCGAGTTCAAGGAGTTTCACTGGAACTGGGAGATCGCTCTC 297
Query 360 TGGTGAAAATGTGCCTACTGGTAATCAACAGCCTGAGCCTGTTGTTCACAACATTGTTTT 419
|||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 298 TGGTGAAAATATGTCTACTGGTCTTCAACAGCCTGAGCCTGTGGTTCACAACATTGTTTT 357
Query 420 CTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 479
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTGGTCTAATGGATTCACTATAGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 417
Query 480 TGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCCGA 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 418 TGCATTGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCAGA 477
Query 540 TAGAAGAGCTCCGGTTCATGTCAACTTGATGCGAAAGGAAGAGAAATGCCCTGAAAGACA 599
|| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 478 TAAAAGAGCCCCGGTTCATGTCAATTTGATGCGAAGGGAAGAGAAATGCCCTGAAAGACA 537
Query 600 GAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAATGAAGGTAG 659
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 538 GAAACGTAGGGTTTCATTTCAAGGTGTTGGAAGAACTCTAGGTGGTAGCAATGATGGCAG 597
Query 660 CGGAAGTAGCTCACCTGTGGCTCCAGACTCCGCTCCCATTCCCATCCAAACC---GAA-C 715
|||||||||||| ||||| ||||||||||||||| | ||||||||||||||| ||| |
Sbjct 598 CGGAAGTAGCTCCCCTGTTGCTCCAGACTCCGCTGCTATTCCCATCCAAACCAACGAAAC 657
Query 716 C--A---GCACCATCTCAAAGTCTTGTAATAGATGAAACCGTTCCAACCACATCGATACA 770
| | |||||| ||| ||||||||||||||||||||| |||||| ||||||||||||
Sbjct 658 CGTATCAGCACCACCTCCAAGTCTTGTAATAGATGAAACTATTCCAATCACATCGATACA 717
Query 771 GCTTAGACTAGCGGATGGGACACGTCTGGTGGCTAAGTTCAATCACCATCACACGGTCAA 830
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GCTTAGACTAGCGGATGGGACACGTCTGGTGGGTAAGTTCAATCACCATCACACGGTCAA 777
Query 831 CGACATTCGCGGTTTCATTGACTCATCTCGACCTGGAGCCTC-GTTGAACTACCAGCTTC 889
|||||||||||||||||||||||| ||||| |||||||| || | |||||||||||||||
Sbjct 778 CGACATTCGCGGTTTCATTGACTCCTCTCGTCCTGGAGC-TCCGGTGAACTACCAGCTTC 836
Query 890 AGACAATGGGGTTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATTGAAGAAGCTG 949
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 837 AGACAATGGGATTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATCGAAGAAGCTG 896
Query 950 GTCTCGCCAACTCTGTTGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTGTGGTTCTTT 1009
|||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 897 GTCTGGCCAACTCTGTCGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTTTG-TTCTTT 955
Query 1010 TT-GTCTATCTATATGCATTATAATGAGATTTTCATAACTGTTGTAGTAACCAGGTCTTT 1068
|| |||| |||||||| ||||| ||||||| | |||||||||| |||||||||| |||||
Sbjct 956 TTTGTCTTTCTATATGTATTATTATGAGATCTCCATAACTGTTATAGTAACCAGATCTTT 1015
Query 1069 AAAATGTAAGTTACTTCTTC-ACTCTGTATACTCAGCATAA 1108
|||||||||||||||||||| | | ||||||| ||||||||
Sbjct 1016 AAAATGTAAGTTACTTCTTCGATT-TGTATACGCAGCATAA 1055
> Ahg492650 jgi|Araly1|492650|fgenesh2_kg.7__2083__AT4G22150.1
Length=1039
Score = 568 bits (307), Expect = 4e-161
Identities = 507/599 (85%), Gaps = 31/599 (5%)
Strand=Plus/Plus
Query 73 ATGTCTTCGAAAGACAAGAAACCGTCGAAGCCATCGAGTAGTC-G--TGGTGGAATCCGA 129
||||| || || |||||||||||| |||||||| ||||| ||| | |||||| |||||
Sbjct 128 ATGTCGTCTAAGGACAAGAAACCGGCGAAGCCAACGAGTGGTCGGACTGGTGGTATCCGT 187
Query 130 ACTCTTTCCGATCTTAACCGTAGGTCTG-GTCCTGACTCCGACAGTGATTCCGATGGTCC 188
|| ||||||||||| ||||| || || | | ||||| ||||| ||||| |||||||| ||
Sbjct 188 ACACTTTCCGATCTGAACCGAAGATCAGAG-CCTGATTCCGATAGTGACTCCGATGGACC 246
Query 189 ACAAGAATACTACACAGGTGGTGAGAAAAGTGGTATG-TTAGTTCAAGAT-C--C-ATCG 243
||||| |||||||| ||||| || |||||||||||| || ||||| ||| | | | |
Sbjct 247 TCAAGAGTACTACACCGGTGGCGAAAAAAGTGGTATGCTT-GTTCAGGATCCTACAAAAG 305
Query 244 -A--AAAA-A-GATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAG 298
| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 306 AACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAACTAGGAGCTGTAG 365
Query 299 AAGGACCTCTTGAGCCACCTCCGAGTTCCAGGAG-TTTCACTGGAACTGGTAGATTGCTT 357
||||||||||||||| ||| | |||||||| || ||| |||||||| || |||||||||
Sbjct 366 AAGGACCTCTTGAGCGTCCTTCAAGTTCCAGAAGCTTT-ACTGGAACCGGGAGATTGCTT 424
Query 358 TCTGGTGAAAATGTGCCTACTGG-TAATCAACAGCCTGAGCCTGTTG-TTCACAACATTG 415
||||| |||| |||||| || || | |||||||||||||||||| | ||||||| |||
Sbjct 425 TCTGGAGAAAGTGTGCCAAC-GGCTCTTCAACAGCCTGAGCCTGT-GATTCACAATATTA 482
Query 416 TTTTCTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTG 475
|||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||| |
Sbjct 483 TTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGATCCAG 542
Query 476 AGAATGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTG 535
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 543 AGAATGCATCTTTTCTTGATAGCATTCGAAAGTCTGAATGCCCGAAAGAGCTTGAGCCTG 602
Query 536 CCGATA-GAAGAGCTCCGGTTCATGTCAA-CTTGATGCGAA-AGGAAGAGAAATGCCCTG 592
| |||| || |||||||||| |||||||| ||| ||| ||| || | |||||||||||||
Sbjct 603 CTGATAAGA-GAGCTCCGGTACATGTCAATCTT-ATGAGAAGAG-ATGAGAAATGCCCTG 659
Query 593 A-AAGACAGAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAA 650
| || | |||||| || |||| ||||||| || |||||||| |||||||||||| ||||
Sbjct 660 AGAA-AGAGAAACTTAAGGTTGCATTTCAAGGAGTTGGAAGGACTCTAGGTGGT-GCAA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5