BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04220.1 Length=2436 Score E Sequences producing significant alignments: (Bits) Value Ahg490081 jgi|Araly1|490081|fgenesh2_kg.6__3215__AT4G04220.1 3398 0.0 Ahg317219 jgi|Araly1|317219|fgenesh1_pm.C_scaffold_3000235 536 3e-151 Ahg903167 jgi|Araly1|903167|Al_scaffold_0003_295 398 1e-109 Ahg927994 jgi|Araly1|927994|scaffold_300451.1 366 4e-100 > Ahg490081 jgi|Araly1|490081|fgenesh2_kg.6__3215__AT4G04220.1 Length=2439 Score = 3398 bits (1840), Expect = 0.0 Identities = 2265/2464 (92%), Gaps = 53/2464 (2%) Strand=Plus/Plus Query 1 ATGTCGAAGCAATGTCTTCTCTCCTGCTT-C----C----TCTTCTTCTGCTTCTTCATA 51 |||||||||| |||| ||||||||||||| | | ||||||||| |||||||||| Sbjct 1 ATGTCGAAGCCATGTTTTCTCTCCTGCTTCCTTTTCTTTTTCTTCTTCTTCTTCTTCATA 60 Query 52 CCACAACTATCTTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAAC 111 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCAAAACTATCTTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAAC 120 Query 112 TTGCTGATTCACAACATCAAGGACAACTACACAGCCTTTGAAGAATTAGGGACATGGAGG 171 |||||||||||||||||||||| |||| ||||||| ||| || ||||||||||||||| Sbjct 121 ATGCTGATTCACAACATCAAGGAAAACTCCACAGCCGTTGGAGGTTTAGGGACATGGAGG 180 Query 172 CCAAACTCAGATTGCTGCAAATGGCTACGCGTGACATGTAACGCTAGTTCGCCTTCCAAA 231 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 CCAAACTCAGATTGCTGCAAATGGCTACGCGTGAGATGTAACGCTAGTTCGCCTTCCAAA 240 Query 232 GAAGTGATAGACCTGAATCTATTCT-TGCTCATCCCCCCTGGCTTAGTTAGTTCAAGCAT 290 ||||||||||||||||||||| || | ||||||| | ||||| ||||||||||||||| Sbjct 241 GAAGTGATAGACCTGAATCTAAGCTAT-CTCATCCTCTCTGGCACAGTTAGTTCAAGCAT 299 Query 291 TTTGAGACC-GATTCTGCGTATAAACTCTCTTGTTGGGCTTGATGTCTCATTTAACAAC- 348 ||||||||| | ||||||||||||||||||||||| |||||||||||| | ||| | Sbjct 300 TTTGAGACCAG-TTCTGCGTATAAACTCTCTTGTTTCGCTTGATGTCTCGTCTAATT-CT 357 Query 349 ATACAAGGAGAGATTCCTGGATATGCGTTTGTGAACTTGACCAGCTTGATTTCTCTTGAC 408 ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| Sbjct 358 ATACAAGGAGAGATTCCTGGAGATGCATTTGTGAACTTGACCAGCTTGATCTCTCTTGAC 417 Query 409 ATGTGTTGTAATAGATTTAACGGCTCAATTCCTCATGAATTGTTCTCCTTGACAAATCTT 468 ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 418 ATGAGTTCTAATAGATTTAACGGCTCAATTCCTCATGAATTGTTCTCCTTGAAAAATCTT 477 Query 469 CAGCGTCTTGATTTAAGCAGGAATGTTATTGGCGGTACGTTGAGTGGTGACATCAAAGAG 528 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 478 CAGCGTCTTGACTTAAGCAGGAATGTTATTGGCGGTACATTGAGTGGTGACATCAAAGAG 537 Query 529 CTCAAGAATCTGCAGGAACTGATCTTAGATGAGAATCTCATTGGAGGAGCGATTCCTTCA 588 || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 538 CTAAAGAATCTGCAGGAACTGATCTTAGATGAGAATCTCATTGGAGGAGAGATTCCTCCA 597 Query 589 GAAATAGGTAGTCTTGTCGAACTACTGACGCTGACCTTGAGGCAGAACATGTTCAATAGT 648 ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || Sbjct 598 GAAATAGGTAGTCTTGTCGAACTACGGACGCTGACATTGAGGCAGAACATGTTCAATGGT 657 Query 649 TCCATACCGTCGTCTGTATCACGGTTAACGAAGCTCAAAACGATAGATCTTCAGAACAAT 708 || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 658 TCTATACCGTCGTCTGTTTCACGGTTAACGAAGCTCAAAACGATTGATCTTCAGAACAAT 717 Query 709 TTCTTGTCTTCTAAGATTCCAGATGATATTGGAAACTTGGTCAATCTATCAACTCTGTCC 768 | |||||||||| | |||||||| |||||||||||||| ||||||||||||||||| || Sbjct 718 TCCTTGTCTTCTGATATTCCAGACGATATTGGAAACTTAGTCAATCTATCAACTCTATCT 777 Query 769 TTGAGCATGAACAAGTTGTCGGGTGGAATTCCATCGTCGATTCATAATCTGAAAAATCTT 828 ||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||| Sbjct 778 TTGAGCATGAACAAGTTGTGGGGCGGAATTCCAACGTCGATTCAGAATCTGAAAAATCTT 837 Query 829 GAAACCCTTCAGCTTGAGAATAACAATGGCTTGTCAGGTGAGATTCCCGCAGCTTGGTTG 888 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 838 GAAACCATTCAGCTTGAGAATAACAATGGCTTGTCAGGTGAGATTCCCACAGCTTGGTTG 897 Query 889 TTTGGTCTTCAGAAGCTGAAGGTACTACGGCTTGAAGGAAACAACAAACTCCAATGGAAC 948 ||||||||| |||||||||||||||| ||||| | ||||||||| |||||||||||| Sbjct 898 TTTGGTCTTGAGAAGCTGAAGGTACTGCGGCTCGGAGGAAACAAG---CTCCAATGGAAC 954 Query 949 AATAATGGTTATGTCTTTCCACAGTTTAAGTTAACACATCTGTCACTTAGATCTTGTGGC 1008 || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 955 AACAATGGTTATGTCTTTCCACAGTTTAAGTTAACTGACCTGTCACTTAGATCTTGTGGC 1014 Query 1009 TTAGAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTG 1068 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1015 TTAAAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAACTCTTGTTTACTTGGATTTG 1074 Query 1069 AGCATTAACAGACTCGAAGGAAGATTCCCAAAATGGCTAGCTGATCTGAAAATCAGAAA- 1127 |||||||||||||| |||||||| ||||| ||||||||||||||| ||| |||| || Sbjct 1075 AGCATTAACAGACTGGAAGGAAGTTTCCCGAAATGGCTAGCTGATTTGACAATCC-AATT 1133 Query 1128 CATAACTTTGTCAGACAACAGACTCACAGGCTCACTGCCTCCAAATTTGTTTCAG-CGTC 1186 ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 1134 CATAATTTTATCAGACAACAGACTCTCAGGCTCACTGCCTCCAAATTTGTTTCAGTC-TC 1192 Query 1187 CGAGCTTATACTATCTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGATACGA 1246 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1193 CGAGCTTATCCTATCTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGAAAAGA 1252 Query 1247 TTGGCGA-ATCACAGGTCATGGTACTCATGTTGTCTGAAAACAACTTCTCAGGATCAGTA 1305 ||| | | ||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1253 TTGTC-ATATCACTGGTCATGGTACTCATGCTGTCTGAAAACAACTTCTCAGGATCAGTA 1311 Query 1306 CCAAAGTCTATTACAAAGATCCCCTTT-CTCAAGTTGTTGGACTTGTCAAAGAATCGATT 1364 ||||||||||||||||||||| ||| || ||||||||||||||||||||||| |||| Sbjct 1312 CCAAAGTCTATTACAAAGATCTT-TTTGCTGGAGTTGTTGGACTTGTCAAAGAATAGATT 1370 Query 1365 ATCAGGTGAATTCCCGAGGTTCCGCCCCGAGTCATACCTTGAGTGGCTCGATATATCTTC 1424 |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| Sbjct 1371 ATCAGGTGAATTCCCGAGGTTCCGTCCCGAGTCAAACCTTGTGTGGCTCGATATATCTTC 1430 Query 1425 GAACGAGTTCTCTGGGGATGTTCCAGCTTACTTTGGAGGATCCACCAGTATGCTCTTAAT 1484 ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| Sbjct 1431 CAACGAGTTCTCCGGGGATGTTCCAGCTTACTTTGGGGGATCCATCAGTATGCTATTAAT 1490 Query 1485 GAGTCAGAACAATTTCAGCGGCGAATTTCCTCAGAACTTCAGAAATCTTTCATATCTGAT 1544 |||||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 1491 GAGTCAGAACAACTTCAGCGGCGAATTCCCTCAGAACTTCAGAAATCTCTCACGTCTGAT 1550 Query 1545 CCGTCTTGATCTCCATGACAACAAAATCTCTGGA-ACAGTCGCGAGTTTAATCTCCC-AG 1602 |||||||||||||||||||||||||||||||||| | | | |||||||||| ||||| | Sbjct 1551 CCGTCTTGATCTCCATGACAACAAAATCTCTGGAGA-ATTTGCGAGTTTAACCTCCCGA- 1608 Query 1603 TTATCTTCTTCTGTAGAGGTTCTTAGCCTGAGAAACAATTCCCTCAAAGGTTCAATCCCA 1662 ||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1609 TTATCTTGTTCTCTAGAGGTACTTAGCCTGAGAAACAATTCCCTCGAAGGTTCAATCCCA 1668 Query 1663 GAAGGCATATCAAATCTCACAAGCCTTAAGGTCTTGGATCTCTCTGAGAACAATCTTGAT 1722 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1669 GAAGGCATATCAAATCTCACAAGCCTCCAGGTCTTGGATCTCTCTCAGAACAATCTTGAT 1728 Query 1723 GGATATCTCCCTTCATCTCTTGGGAATCTTACATGCATGATAAAATCTCCTGAGCCCTCA 1782 || ||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 1729 GGGTATCTCCCTTCGTCTCTTGGGAATCTTACATCCATGATAAAATCTCCTGAGAGCTCA 1788 Query 1783 GCTAT-GACTATCCGTCCCTATTT-CAGCTCCTATACCGACATACCCAACATAGAAAGAT 1840 || | | ||| || |||| ||| ||||| | |||||||| | | |||| || Sbjct 1789 TCT-TCGGCTAAGCGACCCT-TTTACAGCTTCAATACCGACTT-C--------GAAACAT 1837 Query 1841 TAATCGAGATCGAATCAGAAGATATATTTAGTCTTGTAGTGAACTGGAAGAATTCAAAAC 1900 ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1838 TAATCAAGATCAAATCACAAGATATATTTAGTCTTGTAGTGAACTGGAAGAATTCAAAAC 1897 Query 1901 AAGTTCTTTTCGACAGAAACTTCTACCTCTACACTCTCTTAGATCTCTCCAAGAACAAGC 1960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1898 AAGTTCTTTTCGACAGAAACTTCTACCTCTACACTCTCTTAGATCTCTCCAAGAACAAGC 1957 Query 1961 TACACGGAGAAATCCCAACTTCTTTAGGCAATCTCAAAAGCCTAAAGGTTTTAAATC-TT 2019 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 1958 TACACGGAGAAATCCCAACTTCTTTAGGCAATCTCAAAAGACTAAAGGTTTTAAA-CGTT 2016 Query 2020 TCCAACAACGAGTTCTCTGGATTGATCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAG 2079 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2017 TCCAACAATGAGTTCTCTGGATTGATCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAG 2076 Query 2080 AGCTTAGACCTTTCACACAACAACCTCACTGGCGAAATCCCGAAAACGTTATCCAAGCTA 2139 ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2077 AGCGTAGACCTTTCACACAACAACCTCAAAGGCGAAATCCCGAAAACGTTATCCAAGCTA 2136 Query 2140 AGCGAGCTGAATACATTGGATTTGCGTAACAACAAGCTTAAAGGTAGAATCCCTGAAAGT 2199 |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 2137 AGCGAGCTGAATACTTTGGATTTGAGTAACAACAAGCTTACAGGTAGAATCCCTGAAAGT 2196 Query 2200 CCTCAGCTAGACAGATTGAACAATCCAAACATTTACGCGAACAACAGCGGAATCTGTGGA 2259 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2197 CCTCAACTAGACAGATTGAACAATCCAAACATTTACGCGAACAACAGCGGAATCTGTGGA 2256 Query 2260 ATGCAAATCCAAGTACCATGCTTTCCTACACAGACCAAGCAGCCAGCTGAGgaaaaagaa 2319 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2257 ATGCAAATCCAAGTACCATGCTCTCCTACACAGACCAAGCAGCCAGCTGAGGAAAAAGAA 2316 Query 2320 gaagaagaca-aagaaga-a--gaaga--aa-CAATTTTTTCATGGAATGCAGCAGCCAT 2372 |||||||| | ||||||| | ||||| || |||| ||||||||||| || |||| ||| Sbjct 2317 GAAGAAGA-AGAAGAAGACAAAGAAGAGGAAACAATGTTTTCATGGAAAGCTGCAGTCAT 2375 Query 2373 AGGTTGCTCTTGTGGATTCCTTATAGCAGTTGTGTTCATGTCTTACAATGAGTTATGGAA 2432 |||||| ||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| Sbjct 2376 AGGTTGTTCTTGTGGATTTCTTATAGCAGTTGTATTCATGTCATACAATGGGATATGGAA 2435 Query 2433 GTAA 2436 |||| Sbjct 2436 GTAA 2439 > Ahg317219 jgi|Araly1|317219|fgenesh1_pm.C_scaffold_3000235 Length=2016 Score = 536 bits (290), Expect = 3e-151 Identities = 433/500 (87%), Gaps = 17/500 (3%) Strand=Plus/Plus Query 606 CGAACTACTGACGCTGAC-CTTGAGGCAGAACATGTTCAATAGTTCCATACCGTCGTCTG 664 |||||| ||||||||||| | ||||||||||| |||||| | |||| || |||| ||||| Sbjct 522 CGAACTGCTGACGCTGACAC-TGAGGCAGAACCTGTTCAGTGGTTCTATTCCGTTGTCTG 580 Query 665 TATCACGGTTAACGAAGCTCAAAACGATAGATCTTCAGAACAATTTCTTGTCTTCT-AAG 723 |||||| ||||||||||||| |||| | ||||| |||||||||| |||||||| | || Sbjct 581 TATCACAGTTAACGAAGCTCGAAACTTTTGATCTCCAGAACAATTCCTTGTCTTTTGAA- 639 Query 724 ATTCCAGATGATATTGGAAACTTGGTCAATCTATCAACTCTGTCCTTGAGCATGAACAAG 783 ||||| || | |||||| || || | |||| ||||||||||||| |||||||||||||| Sbjct 640 ATTCCCGACGGTATTGGGAAGTTAGCCAATATATCAACTCTGTCTTTGAGCATGAACAAC 699 Query 784 TTGTCGGGTGGAATTCCATCGTCGATTCATAATCTGAAAAATCTTGAAACCCTTCAGCTT 843 ||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||| Sbjct 700 TTGTCTGGTGGAATTCCATCGTCCATTCAGAATCTGACAAATCTTGAAACCCTTGAGCTT 759 Query 844 GAGAATAACAATGGCTTGTCAGGTGAGATTCCCGCAGCTTGGTTGTTTGGTCTTCAGAAG 903 |||||||||||||||||||| ||||||||| || | |||| ||||||||||||||||| Sbjct 760 GAGAATAACAATGGCTTGTCCGGTGAGATT-CC-TA-CTTGACTGTTTGGTCTTCAGAAG 816 Query 904 CTGAAGGTACTACGGCTTGAAGGA-AACAACAAACTCCAATGGAACAATAATGGT-TATG 961 |||||| || | ||| || |||| | |||||||||||||||||||| ||| || | || Sbjct 817 CTGAAGATATTGCGG-TT--AGGAGGA-AACAAACTCCAATGGAACAAGAAT-GTCTCTG 871 Query 962 TCTTTCCACAGTTTAAGTTAACACATCTGTCACTTAGATCTTGTGGCTTAGAAGGGAATA 1021 ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 872 TCTATGCACAGTCTAAGTTAACACATCTGTCACTTAGATCTTGTGGCTTAGAAGGGAACA 931 Query 1022 TTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTGAGCATTAACAGAC 1081 |||||||||||||||||||||||||||||||| || || |||| ||||||| |||| || Sbjct 932 TTCCGGATTGGCTCAAGAATCAAACAGCTCTTCTTC-CT-GGATCTGAGCATGAACAAAC 989 Query 1082 TCGAAGGAAGATT-CCCAAA 1100 |||||||||| || |||||| Sbjct 990 TCGAAGGAAGTTTTCCCAAA 1009 Score = 231 bits (125), Expect = 1e-59 Identities = 255/316 (81%), Gaps = 16/316 (5%) Strand=Plus/Plus Query 6 GAAGCAATGTCTTCTCTCCTGCTTCCTCTTCTTC-T-G-CTTCTTCATACCACAACTATC 62 ||||| ||||| |||||| | ||||||||| ||| | | ||||||||| ||||| |||| Sbjct 6 GAAGCCATGTCATCTCTCTTACTTCCTCTTGTTCTTCGTCTTCTTCATTTCACAAATATC 65 Query 63 TTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAACTTGCTGATTCA 122 |||||||| ||| |||| |||| |||||||||||| ||||||||||||||||||| ||| Sbjct 66 GTTCTCTTGCCCATAAGACCAAATACAATCCCTTCTTGAGTTCAAGAACTTGCTGACTCA 125 Query 123 CAACATCAAGGA-CA-ACTACA-C----AGC-CTTTG-AAGAATTAGGGACATGGAGGCC 173 |||||||| | || | ||| | | | | ||| ||| |||| |||||||||||| Sbjct 126 AAACATCAATAACCAGTCCACAGCAATAATCACCTTGAAAGGTTTAGAGACATGGAGGCC 185 Query 174 AAACTCAGATTGCTGCAAATGGCTACGCGTGACATGTAACGCTAGTTCGCCTTCCAAAGA 233 |||||||||||||||||| |||| || ||| | ||| ||| || |||| ||| ||| ||| Sbjct 186 AAACTCAGATTGCTGCAAGTGGCAACTCGTCAGATGCAACACTCGTTCCCCTACCAGAGA 245 Query 234 AGTGATAGACCTGAATCT--ATTCTTGCTCATCCCCCCTGGCTTAGTTAGTTCAAGCATT 291 |||||||||||| ||||| | ||| || |||| | |||||| ||| |||||||||||| Sbjct 246 AGTGATAGACCTAAATCTGCACTCT--CTTATCCTCTCTGGCTCAGTGAGTTCAAGCATT 303 Query 292 TTGAGACCGATTCTGC 307 |||||||| |||||| Sbjct 304 CTGAGACCGGTTCTGC 319 Score = 128 bits (69), Expect = 2e-28 Identities = 89/98 (91%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 1683 AAGCCTTAAGGTCTTGGATCTCTCTGAGAACAATCTTGATGGATATCTCCCTTCATCTCT 1742 ||| || |||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1398 AAGTCTCAAGGTCTTGGATCTCTCTGAGAACCATCTTGATGGATCTCTCCCTTCATCTCT 1457 Query 1743 TGGGAATCTTACATGCATGATAA-AATCTC-CT-GAGC 1777 ||||||||||||| |||||| || |||||| || |||| Sbjct 1458 TGGGAATCTTACAAGCATGA-AAGAATCTCTCTCGAGC 1494 > Ahg903167 jgi|Araly1|903167|Al_scaffold_0003_295 Length=948 Score = 398 bits (215), Expect = 1e-109 Identities = 333/388 (86%), Gaps = 16/388 (4%) Strand=Plus/Plus Query 1941 AGATCTCTCCAAGAACAAGCTACACGGAGAAATCCCA-ACTTCTTTAGGCAATCTCAAAA 1999 ||| |||||| ||||||||||| ||||||| | ||| | |||||||||||||||||||| Sbjct 559 AGAACTCTCCTAGAACAAGCTATTCGGAGAAGTTCCATA-TTCTTTAGGCAATCTCAAAA 617 Query 2000 GCCT-AAAGGTTTTAAATCTTTCCA-ACAACGAGTTCTCTGGATTGATCCCACAAAGTTT 2057 | || |||| |||| || || | || ||||||| ||||||||||||||||||||||||| Sbjct 618 G-CTGAAAGCTTTT-AACCTCT-CATACAACGACATCTCTGGATTGATCCCACAAAGTTT 674 Query 2058 TGGAGATCTTGAGAAGGTAGAGAGCTTAGACCTTTCACACAACAACCTCACTGGCGAAAT 2117 |||| |||||||||||||||||| ||||||||||||||||||||||||| | |||||||| Sbjct 675 TGGAAATCTTGAGAAGGTAGAGATCTTAGACCTTTCACACAACAACCTCTCAGGCGAAAT 734 Query 2118 CCCGAA-A-ACGTTATCCAAGCTAAGCGAGCTGAATACATTGGATTTGCGTAACAACAAG 2175 |||| | | || || |||||||| ||| |||||||| || ||| ||| |||||||| Sbjct 735 CCCGCAGACAC-TT-TCCAAGCTCAGCAAGCTGAATGTATCGGAGTTGAAAAACAACAAA 792 Query 2176 CTTAAAGGTAGAATCCCTGAAAGTCCTCAGCTAGACAGATTGAACAATCCAAACATTTAC 2235 |||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| Sbjct 793 CTTACAGGTAGAATCCCTGAGAGTCCTCAGCTAGACAGATTGAACGATCCAAACACTTAC 852 Query 2236 GCGAACAACAGCGGAA-TCTGTGGAATGCAAATCCAAGTACCATGCTTTCCTACACAGAC 2294 |||||||||| | || | ||||||||||||||||||| |||||||| | ||||||||| Sbjct 853 GCGAACAACAACA-AACTATGTGGAATGCAAATCCAAGAACCATGCT--C-TACACAGAC 908 Query 2295 CAAGCAGCCAGCTGAGgaaaaagaagaa 2322 ||||||||||| || || ||||| ||| Sbjct 909 CAAGCAGCCAGAGGAAGATAAAGAGGAA 936 Score = 246 bits (133), Expect = 5e-64 Identities = 244/297 (82%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 1011 AGAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTGAG 1070 |||||| || ||||||||||||||||||||||||||||||||| ||| | ||||| |||| Sbjct 267 AGAAGGAAAAATTCCGGATTGGCTCAAGAATCAAACAGCTCTTCTTTTCCTGGATCTGAG 326 Query 1071 CATTAACAGACTCGAAGGAAGATT-CCCAAAATGGCTAGCTGATCTGAAAATCAGAAAC- 1128 ||| |||| ||| |||||||| || ||| || ||| | |||||||| |||||| ||||| Sbjct 327 CATGAACAAACTTGAAGGAAGTTTTCCCCAA-TGGTTGGCTGATCTAAAAATC-GAAACC 384 Query 1129 ATAACTTTGTCAGACAACAGACTCACAGGCTCACTGCCTCCAAATTTGTTTCAG-CGTCC 1187 |||| ||| |||||| |||||||| |||| ||| ||||||| | |||||||||| | | Sbjct 385 ATAATTTTTTCAGACTACAGACTCTCAGGTTCATTGCCTCCTAGTTTGTTTCAGTC-TAT 443 Query 1188 GAGCTTATACTAT-CTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGATACGA 1246 ||||||| | | |||| |||||||| |||||||| ||||||||||| ||||||| | Sbjct 444 AAGCTTAT-CGGTTCTTGCGCTATCAAGAAACAACTTCTCTGGTCAGATTCCTGATATG- 501 Query 1247 TT-GGCGAATCACAGGTCATGGTACTCATGTTGTCTGAAAACAACTTCTCAGGATCA 1302 || || ||| || ||||||| | | ||| || ||||||||||||||||||||||| Sbjct 502 TTAGGAGAAACATGGGTCATGACATTGATGCTGACTGAAAACAACTTCTCAGGATCA 558 > Ahg927994 jgi|Araly1|927994|scaffold_300451.1 Length=635 Score = 366 bits (198), Expect = 4e-100 Identities = 321/378 (85%), Gaps = 18/378 (5%) Strand=Plus/Plus Query 357 AGAGATTCCTGGATATGCGTTTGTGAACTTGACCAGCTTGATTTCTCTTGACATGTGTTG 416 ||| ||||||||| ||| |||||||| ||||||||| || || |||||||||||| | || Sbjct 236 AGATATTCCTGGAGATGGGTTTGTGAGCTTGACCAGTTTTATCTCTCTTGACATGAG-TG 294 Query 417 -TAATAGATTTAACGGCTCAATTC-CTCATGAATTGTTCTCCTTGACA-AATCTTCAGCG 473 ||| || ||||||||||| | || ||| ||||||||||||||||| | | ||||| ||| Sbjct 295 ATAAGAGCTTTAACGGCTCTA-TCACTCCTGAATTGTTCTCCTTGA-AGACTCTTCGGCG 352 Query 474 TCTT-GATTTAAGCAGGAATGTTATTGGCGGTACGTTGAGTGGTGACATCAAAGAGCTCA 532 ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 353 -CTTGGACTTAAGCAGGAATGTTATTGGTGGTACGTTGAGTGGTGACATCAAAGAGCTCA 411 Query 533 AGAATCTGCAGGAACTGATCTTAG-ATGAGAATCTCATTGGAGG-AGCGATTCCTTCAGA 590 |||||||||||||||||||||| | |||||||| |||||| ||| || ||||||| |||| Sbjct 412 AGAATCTGCAGGAACTGATCTT-GTATGAGAATTTCATTG-AGGGAGAGATTCCTCCAGA 469 Query 591 AATAGGTAGTCTTGTCGAACTACTGACGCTGACCTTGA-GGCAGAACATGTTCAATAGTT 649 |||||||||||||| | |||| | ||||||||| || | ||| ||||||||||| | ||| Sbjct 470 AATAGGTAGTCTTGCCAAACTGCGGACGCTGACATT-ATGGCCGAACATGTTCAGTGGTT 528 Query 650 CCATACCGTCGTCTGTATCACGGTTAACG-AAGCTCAAAACGATAGATCTTCAGAACAAT 708 | | ||| | ||||||||||| ||| | | |||||| ||||| | ||||| ||||||||| Sbjct 529 CTAAACCATTGTCTGTATCACAGTTGA-GTAAGCTCGAAACGTTTGATCTCCAGAACAAT 587 Query 709 TTC-TTGTCTTCTAAGAT 725 | | ||||||| | |||| Sbjct 588 T-CATTGTCTTTTGAGAT 604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91797490450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5