BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04220.1
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490081 jgi|Araly1|490081|fgenesh2_kg.6__3215__AT4G04220.1 3398 0.0
Ahg317219 jgi|Araly1|317219|fgenesh1_pm.C_scaffold_3000235 536 3e-151
Ahg903167 jgi|Araly1|903167|Al_scaffold_0003_295 398 1e-109
Ahg927994 jgi|Araly1|927994|scaffold_300451.1 366 4e-100
> Ahg490081 jgi|Araly1|490081|fgenesh2_kg.6__3215__AT4G04220.1
Length=2439
Score = 3398 bits (1840), Expect = 0.0
Identities = 2265/2464 (92%), Gaps = 53/2464 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAAGCAATGTCTTCTCTCCTGCTT-C----C----TCTTCTTCTGCTTCTTCATA 51
|||||||||| |||| ||||||||||||| | | ||||||||| ||||||||||
Sbjct 1 ATGTCGAAGCCATGTTTTCTCTCCTGCTTCCTTTTCTTTTTCTTCTTCTTCTTCTTCATA 60
Query 52 CCACAACTATCTTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAAC 111
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAAAACTATCTTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAAC 120
Query 112 TTGCTGATTCACAACATCAAGGACAACTACACAGCCTTTGAAGAATTAGGGACATGGAGG 171
|||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||||
Sbjct 121 ATGCTGATTCACAACATCAAGGAAAACTCCACAGCCGTTGGAGGTTTAGGGACATGGAGG 180
Query 172 CCAAACTCAGATTGCTGCAAATGGCTACGCGTGACATGTAACGCTAGTTCGCCTTCCAAA 231
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CCAAACTCAGATTGCTGCAAATGGCTACGCGTGAGATGTAACGCTAGTTCGCCTTCCAAA 240
Query 232 GAAGTGATAGACCTGAATCTATTCT-TGCTCATCCCCCCTGGCTTAGTTAGTTCAAGCAT 290
||||||||||||||||||||| || | ||||||| | ||||| |||||||||||||||
Sbjct 241 GAAGTGATAGACCTGAATCTAAGCTAT-CTCATCCTCTCTGGCACAGTTAGTTCAAGCAT 299
Query 291 TTTGAGACC-GATTCTGCGTATAAACTCTCTTGTTGGGCTTGATGTCTCATTTAACAAC- 348
||||||||| | ||||||||||||||||||||||| |||||||||||| | ||| |
Sbjct 300 TTTGAGACCAG-TTCTGCGTATAAACTCTCTTGTTTCGCTTGATGTCTCGTCTAATT-CT 357
Query 349 ATACAAGGAGAGATTCCTGGATATGCGTTTGTGAACTTGACCAGCTTGATTTCTCTTGAC 408
||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 358 ATACAAGGAGAGATTCCTGGAGATGCATTTGTGAACTTGACCAGCTTGATCTCTCTTGAC 417
Query 409 ATGTGTTGTAATAGATTTAACGGCTCAATTCCTCATGAATTGTTCTCCTTGACAAATCTT 468
||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 418 ATGAGTTCTAATAGATTTAACGGCTCAATTCCTCATGAATTGTTCTCCTTGAAAAATCTT 477
Query 469 CAGCGTCTTGATTTAAGCAGGAATGTTATTGGCGGTACGTTGAGTGGTGACATCAAAGAG 528
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 CAGCGTCTTGACTTAAGCAGGAATGTTATTGGCGGTACATTGAGTGGTGACATCAAAGAG 537
Query 529 CTCAAGAATCTGCAGGAACTGATCTTAGATGAGAATCTCATTGGAGGAGCGATTCCTTCA 588
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 538 CTAAAGAATCTGCAGGAACTGATCTTAGATGAGAATCTCATTGGAGGAGAGATTCCTCCA 597
Query 589 GAAATAGGTAGTCTTGTCGAACTACTGACGCTGACCTTGAGGCAGAACATGTTCAATAGT 648
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 598 GAAATAGGTAGTCTTGTCGAACTACGGACGCTGACATTGAGGCAGAACATGTTCAATGGT 657
Query 649 TCCATACCGTCGTCTGTATCACGGTTAACGAAGCTCAAAACGATAGATCTTCAGAACAAT 708
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TCTATACCGTCGTCTGTTTCACGGTTAACGAAGCTCAAAACGATTGATCTTCAGAACAAT 717
Query 709 TTCTTGTCTTCTAAGATTCCAGATGATATTGGAAACTTGGTCAATCTATCAACTCTGTCC 768
| |||||||||| | |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 718 TCCTTGTCTTCTGATATTCCAGACGATATTGGAAACTTAGTCAATCTATCAACTCTATCT 777
Query 769 TTGAGCATGAACAAGTTGTCGGGTGGAATTCCATCGTCGATTCATAATCTGAAAAATCTT 828
||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||||||
Sbjct 778 TTGAGCATGAACAAGTTGTGGGGCGGAATTCCAACGTCGATTCAGAATCTGAAAAATCTT 837
Query 829 GAAACCCTTCAGCTTGAGAATAACAATGGCTTGTCAGGTGAGATTCCCGCAGCTTGGTTG 888
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 GAAACCATTCAGCTTGAGAATAACAATGGCTTGTCAGGTGAGATTCCCACAGCTTGGTTG 897
Query 889 TTTGGTCTTCAGAAGCTGAAGGTACTACGGCTTGAAGGAAACAACAAACTCCAATGGAAC 948
||||||||| |||||||||||||||| ||||| | ||||||||| ||||||||||||
Sbjct 898 TTTGGTCTTGAGAAGCTGAAGGTACTGCGGCTCGGAGGAAACAAG---CTCCAATGGAAC 954
Query 949 AATAATGGTTATGTCTTTCCACAGTTTAAGTTAACACATCTGTCACTTAGATCTTGTGGC 1008
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 955 AACAATGGTTATGTCTTTCCACAGTTTAAGTTAACTGACCTGTCACTTAGATCTTGTGGC 1014
Query 1009 TTAGAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTG 1068
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1015 TTAAAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAACTCTTGTTTACTTGGATTTG 1074
Query 1069 AGCATTAACAGACTCGAAGGAAGATTCCCAAAATGGCTAGCTGATCTGAAAATCAGAAA- 1127
|||||||||||||| |||||||| ||||| ||||||||||||||| ||| |||| ||
Sbjct 1075 AGCATTAACAGACTGGAAGGAAGTTTCCCGAAATGGCTAGCTGATTTGACAATCC-AATT 1133
Query 1128 CATAACTTTGTCAGACAACAGACTCACAGGCTCACTGCCTCCAAATTTGTTTCAG-CGTC 1186
||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1134 CATAATTTTATCAGACAACAGACTCTCAGGCTCACTGCCTCCAAATTTGTTTCAGTC-TC 1192
Query 1187 CGAGCTTATACTATCTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGATACGA 1246
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1193 CGAGCTTATCCTATCTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGAAAAGA 1252
Query 1247 TTGGCGA-ATCACAGGTCATGGTACTCATGTTGTCTGAAAACAACTTCTCAGGATCAGTA 1305
||| | | ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1253 TTGTC-ATATCACTGGTCATGGTACTCATGCTGTCTGAAAACAACTTCTCAGGATCAGTA 1311
Query 1306 CCAAAGTCTATTACAAAGATCCCCTTT-CTCAAGTTGTTGGACTTGTCAAAGAATCGATT 1364
||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||
Sbjct 1312 CCAAAGTCTATTACAAAGATCTT-TTTGCTGGAGTTGTTGGACTTGTCAAAGAATAGATT 1370
Query 1365 ATCAGGTGAATTCCCGAGGTTCCGCCCCGAGTCATACCTTGAGTGGCTCGATATATCTTC 1424
|||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1371 ATCAGGTGAATTCCCGAGGTTCCGTCCCGAGTCAAACCTTGTGTGGCTCGATATATCTTC 1430
Query 1425 GAACGAGTTCTCTGGGGATGTTCCAGCTTACTTTGGAGGATCCACCAGTATGCTCTTAAT 1484
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 1431 CAACGAGTTCTCCGGGGATGTTCCAGCTTACTTTGGGGGATCCATCAGTATGCTATTAAT 1490
Query 1485 GAGTCAGAACAATTTCAGCGGCGAATTTCCTCAGAACTTCAGAAATCTTTCATATCTGAT 1544
|||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1491 GAGTCAGAACAACTTCAGCGGCGAATTCCCTCAGAACTTCAGAAATCTCTCACGTCTGAT 1550
Query 1545 CCGTCTTGATCTCCATGACAACAAAATCTCTGGA-ACAGTCGCGAGTTTAATCTCCC-AG 1602
|||||||||||||||||||||||||||||||||| | | | |||||||||| ||||| |
Sbjct 1551 CCGTCTTGATCTCCATGACAACAAAATCTCTGGAGA-ATTTGCGAGTTTAACCTCCCGA- 1608
Query 1603 TTATCTTCTTCTGTAGAGGTTCTTAGCCTGAGAAACAATTCCCTCAAAGGTTCAATCCCA 1662
||||||| |||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1609 TTATCTTGTTCTCTAGAGGTACTTAGCCTGAGAAACAATTCCCTCGAAGGTTCAATCCCA 1668
Query 1663 GAAGGCATATCAAATCTCACAAGCCTTAAGGTCTTGGATCTCTCTGAGAACAATCTTGAT 1722
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1669 GAAGGCATATCAAATCTCACAAGCCTCCAGGTCTTGGATCTCTCTCAGAACAATCTTGAT 1728
Query 1723 GGATATCTCCCTTCATCTCTTGGGAATCTTACATGCATGATAAAATCTCCTGAGCCCTCA 1782
|| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1729 GGGTATCTCCCTTCGTCTCTTGGGAATCTTACATCCATGATAAAATCTCCTGAGAGCTCA 1788
Query 1783 GCTAT-GACTATCCGTCCCTATTT-CAGCTCCTATACCGACATACCCAACATAGAAAGAT 1840
|| | | ||| || |||| ||| ||||| | |||||||| | | |||| ||
Sbjct 1789 TCT-TCGGCTAAGCGACCCT-TTTACAGCTTCAATACCGACTT-C--------GAAACAT 1837
Query 1841 TAATCGAGATCGAATCAGAAGATATATTTAGTCTTGTAGTGAACTGGAAGAATTCAAAAC 1900
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 TAATCAAGATCAAATCACAAGATATATTTAGTCTTGTAGTGAACTGGAAGAATTCAAAAC 1897
Query 1901 AAGTTCTTTTCGACAGAAACTTCTACCTCTACACTCTCTTAGATCTCTCCAAGAACAAGC 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 AAGTTCTTTTCGACAGAAACTTCTACCTCTACACTCTCTTAGATCTCTCCAAGAACAAGC 1957
Query 1961 TACACGGAGAAATCCCAACTTCTTTAGGCAATCTCAAAAGCCTAAAGGTTTTAAATC-TT 2019
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1958 TACACGGAGAAATCCCAACTTCTTTAGGCAATCTCAAAAGACTAAAGGTTTTAAA-CGTT 2016
Query 2020 TCCAACAACGAGTTCTCTGGATTGATCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAG 2079
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 TCCAACAATGAGTTCTCTGGATTGATCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAG 2076
Query 2080 AGCTTAGACCTTTCACACAACAACCTCACTGGCGAAATCCCGAAAACGTTATCCAAGCTA 2139
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2077 AGCGTAGACCTTTCACACAACAACCTCAAAGGCGAAATCCCGAAAACGTTATCCAAGCTA 2136
Query 2140 AGCGAGCTGAATACATTGGATTTGCGTAACAACAAGCTTAAAGGTAGAATCCCTGAAAGT 2199
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2137 AGCGAGCTGAATACTTTGGATTTGAGTAACAACAAGCTTACAGGTAGAATCCCTGAAAGT 2196
Query 2200 CCTCAGCTAGACAGATTGAACAATCCAAACATTTACGCGAACAACAGCGGAATCTGTGGA 2259
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 CCTCAACTAGACAGATTGAACAATCCAAACATTTACGCGAACAACAGCGGAATCTGTGGA 2256
Query 2260 ATGCAAATCCAAGTACCATGCTTTCCTACACAGACCAAGCAGCCAGCTGAGgaaaaagaa 2319
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2257 ATGCAAATCCAAGTACCATGCTCTCCTACACAGACCAAGCAGCCAGCTGAGGAAAAAGAA 2316
Query 2320 gaagaagaca-aagaaga-a--gaaga--aa-CAATTTTTTCATGGAATGCAGCAGCCAT 2372
|||||||| | ||||||| | ||||| || |||| ||||||||||| || |||| |||
Sbjct 2317 GAAGAAGA-AGAAGAAGACAAAGAAGAGGAAACAATGTTTTCATGGAAAGCTGCAGTCAT 2375
Query 2373 AGGTTGCTCTTGTGGATTCCTTATAGCAGTTGTGTTCATGTCTTACAATGAGTTATGGAA 2432
|||||| ||||||||||| |||||||||||||| |||||||| ||||||| | |||||||
Sbjct 2376 AGGTTGTTCTTGTGGATTTCTTATAGCAGTTGTATTCATGTCATACAATGGGATATGGAA 2435
Query 2433 GTAA 2436
||||
Sbjct 2436 GTAA 2439
> Ahg317219 jgi|Araly1|317219|fgenesh1_pm.C_scaffold_3000235
Length=2016
Score = 536 bits (290), Expect = 3e-151
Identities = 433/500 (87%), Gaps = 17/500 (3%)
Strand=Plus/Plus
Query 606 CGAACTACTGACGCTGAC-CTTGAGGCAGAACATGTTCAATAGTTCCATACCGTCGTCTG 664
|||||| ||||||||||| | ||||||||||| |||||| | |||| || |||| |||||
Sbjct 522 CGAACTGCTGACGCTGACAC-TGAGGCAGAACCTGTTCAGTGGTTCTATTCCGTTGTCTG 580
Query 665 TATCACGGTTAACGAAGCTCAAAACGATAGATCTTCAGAACAATTTCTTGTCTTCT-AAG 723
|||||| ||||||||||||| |||| | ||||| |||||||||| |||||||| | ||
Sbjct 581 TATCACAGTTAACGAAGCTCGAAACTTTTGATCTCCAGAACAATTCCTTGTCTTTTGAA- 639
Query 724 ATTCCAGATGATATTGGAAACTTGGTCAATCTATCAACTCTGTCCTTGAGCATGAACAAG 783
||||| || | |||||| || || | |||| ||||||||||||| ||||||||||||||
Sbjct 640 ATTCCCGACGGTATTGGGAAGTTAGCCAATATATCAACTCTGTCTTTGAGCATGAACAAC 699
Query 784 TTGTCGGGTGGAATTCCATCGTCGATTCATAATCTGAAAAATCTTGAAACCCTTCAGCTT 843
||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||
Sbjct 700 TTGTCTGGTGGAATTCCATCGTCCATTCAGAATCTGACAAATCTTGAAACCCTTGAGCTT 759
Query 844 GAGAATAACAATGGCTTGTCAGGTGAGATTCCCGCAGCTTGGTTGTTTGGTCTTCAGAAG 903
|||||||||||||||||||| ||||||||| || | |||| |||||||||||||||||
Sbjct 760 GAGAATAACAATGGCTTGTCCGGTGAGATT-CC-TA-CTTGACTGTTTGGTCTTCAGAAG 816
Query 904 CTGAAGGTACTACGGCTTGAAGGA-AACAACAAACTCCAATGGAACAATAATGGT-TATG 961
|||||| || | ||| || |||| | |||||||||||||||||||| ||| || | ||
Sbjct 817 CTGAAGATATTGCGG-TT--AGGAGGA-AACAAACTCCAATGGAACAAGAAT-GTCTCTG 871
Query 962 TCTTTCCACAGTTTAAGTTAACACATCTGTCACTTAGATCTTGTGGCTTAGAAGGGAATA 1021
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 872 TCTATGCACAGTCTAAGTTAACACATCTGTCACTTAGATCTTGTGGCTTAGAAGGGAACA 931
Query 1022 TTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTGAGCATTAACAGAC 1081
|||||||||||||||||||||||||||||||| || || |||| ||||||| |||| ||
Sbjct 932 TTCCGGATTGGCTCAAGAATCAAACAGCTCTTCTTC-CT-GGATCTGAGCATGAACAAAC 989
Query 1082 TCGAAGGAAGATT-CCCAAA 1100
|||||||||| || ||||||
Sbjct 990 TCGAAGGAAGTTTTCCCAAA 1009
Score = 231 bits (125), Expect = 1e-59
Identities = 255/316 (81%), Gaps = 16/316 (5%)
Strand=Plus/Plus
Query 6 GAAGCAATGTCTTCTCTCCTGCTTCCTCTTCTTC-T-G-CTTCTTCATACCACAACTATC 62
||||| ||||| |||||| | ||||||||| ||| | | ||||||||| ||||| ||||
Sbjct 6 GAAGCCATGTCATCTCTCTTACTTCCTCTTGTTCTTCGTCTTCTTCATTTCACAAATATC 65
Query 63 TTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAACTTGCTGATTCA 122
|||||||| ||| |||| |||| |||||||||||| ||||||||||||||||||| |||
Sbjct 66 GTTCTCTTGCCCATAAGACCAAATACAATCCCTTCTTGAGTTCAAGAACTTGCTGACTCA 125
Query 123 CAACATCAAGGA-CA-ACTACA-C----AGC-CTTTG-AAGAATTAGGGACATGGAGGCC 173
|||||||| | || | ||| | | | | ||| ||| |||| ||||||||||||
Sbjct 126 AAACATCAATAACCAGTCCACAGCAATAATCACCTTGAAAGGTTTAGAGACATGGAGGCC 185
Query 174 AAACTCAGATTGCTGCAAATGGCTACGCGTGACATGTAACGCTAGTTCGCCTTCCAAAGA 233
|||||||||||||||||| |||| || ||| | ||| ||| || |||| ||| ||| |||
Sbjct 186 AAACTCAGATTGCTGCAAGTGGCAACTCGTCAGATGCAACACTCGTTCCCCTACCAGAGA 245
Query 234 AGTGATAGACCTGAATCT--ATTCTTGCTCATCCCCCCTGGCTTAGTTAGTTCAAGCATT 291
|||||||||||| ||||| | ||| || |||| | |||||| ||| ||||||||||||
Sbjct 246 AGTGATAGACCTAAATCTGCACTCT--CTTATCCTCTCTGGCTCAGTGAGTTCAAGCATT 303
Query 292 TTGAGACCGATTCTGC 307
|||||||| ||||||
Sbjct 304 CTGAGACCGGTTCTGC 319
Score = 128 bits (69), Expect = 2e-28
Identities = 89/98 (91%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 1683 AAGCCTTAAGGTCTTGGATCTCTCTGAGAACAATCTTGATGGATATCTCCCTTCATCTCT 1742
||| || |||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1398 AAGTCTCAAGGTCTTGGATCTCTCTGAGAACCATCTTGATGGATCTCTCCCTTCATCTCT 1457
Query 1743 TGGGAATCTTACATGCATGATAA-AATCTC-CT-GAGC 1777
||||||||||||| |||||| || |||||| || ||||
Sbjct 1458 TGGGAATCTTACAAGCATGA-AAGAATCTCTCTCGAGC 1494
> Ahg903167 jgi|Araly1|903167|Al_scaffold_0003_295
Length=948
Score = 398 bits (215), Expect = 1e-109
Identities = 333/388 (86%), Gaps = 16/388 (4%)
Strand=Plus/Plus
Query 1941 AGATCTCTCCAAGAACAAGCTACACGGAGAAATCCCA-ACTTCTTTAGGCAATCTCAAAA 1999
||| |||||| ||||||||||| ||||||| | ||| | ||||||||||||||||||||
Sbjct 559 AGAACTCTCCTAGAACAAGCTATTCGGAGAAGTTCCATA-TTCTTTAGGCAATCTCAAAA 617
Query 2000 GCCT-AAAGGTTTTAAATCTTTCCA-ACAACGAGTTCTCTGGATTGATCCCACAAAGTTT 2057
| || |||| |||| || || | || ||||||| |||||||||||||||||||||||||
Sbjct 618 G-CTGAAAGCTTTT-AACCTCT-CATACAACGACATCTCTGGATTGATCCCACAAAGTTT 674
Query 2058 TGGAGATCTTGAGAAGGTAGAGAGCTTAGACCTTTCACACAACAACCTCACTGGCGAAAT 2117
|||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 675 TGGAAATCTTGAGAAGGTAGAGATCTTAGACCTTTCACACAACAACCTCTCAGGCGAAAT 734
Query 2118 CCCGAA-A-ACGTTATCCAAGCTAAGCGAGCTGAATACATTGGATTTGCGTAACAACAAG 2175
|||| | | || || |||||||| ||| |||||||| || ||| ||| ||||||||
Sbjct 735 CCCGCAGACAC-TT-TCCAAGCTCAGCAAGCTGAATGTATCGGAGTTGAAAAACAACAAA 792
Query 2176 CTTAAAGGTAGAATCCCTGAAAGTCCTCAGCTAGACAGATTGAACAATCCAAACATTTAC 2235
|||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 793 CTTACAGGTAGAATCCCTGAGAGTCCTCAGCTAGACAGATTGAACGATCCAAACACTTAC 852
Query 2236 GCGAACAACAGCGGAA-TCTGTGGAATGCAAATCCAAGTACCATGCTTTCCTACACAGAC 2294
|||||||||| | || | ||||||||||||||||||| |||||||| | |||||||||
Sbjct 853 GCGAACAACAACA-AACTATGTGGAATGCAAATCCAAGAACCATGCT--C-TACACAGAC 908
Query 2295 CAAGCAGCCAGCTGAGgaaaaagaagaa 2322
||||||||||| || || ||||| |||
Sbjct 909 CAAGCAGCCAGAGGAAGATAAAGAGGAA 936
Score = 246 bits (133), Expect = 5e-64
Identities = 244/297 (82%), Gaps = 10/297 (3%)
Strand=Plus/Plus
Query 1011 AGAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTGAG 1070
|||||| || ||||||||||||||||||||||||||||||||| ||| | ||||| ||||
Sbjct 267 AGAAGGAAAAATTCCGGATTGGCTCAAGAATCAAACAGCTCTTCTTTTCCTGGATCTGAG 326
Query 1071 CATTAACAGACTCGAAGGAAGATT-CCCAAAATGGCTAGCTGATCTGAAAATCAGAAAC- 1128
||| |||| ||| |||||||| || ||| || ||| | |||||||| |||||| |||||
Sbjct 327 CATGAACAAACTTGAAGGAAGTTTTCCCCAA-TGGTTGGCTGATCTAAAAATC-GAAACC 384
Query 1129 ATAACTTTGTCAGACAACAGACTCACAGGCTCACTGCCTCCAAATTTGTTTCAG-CGTCC 1187
|||| ||| |||||| |||||||| |||| ||| ||||||| | |||||||||| | |
Sbjct 385 ATAATTTTTTCAGACTACAGACTCTCAGGTTCATTGCCTCCTAGTTTGTTTCAGTC-TAT 443
Query 1188 GAGCTTATACTAT-CTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGATACGA 1246
||||||| | | |||| |||||||| |||||||| ||||||||||| ||||||| |
Sbjct 444 AAGCTTAT-CGGTTCTTGCGCTATCAAGAAACAACTTCTCTGGTCAGATTCCTGATATG- 501
Query 1247 TT-GGCGAATCACAGGTCATGGTACTCATGTTGTCTGAAAACAACTTCTCAGGATCA 1302
|| || ||| || ||||||| | | ||| || |||||||||||||||||||||||
Sbjct 502 TTAGGAGAAACATGGGTCATGACATTGATGCTGACTGAAAACAACTTCTCAGGATCA 558
> Ahg927994 jgi|Araly1|927994|scaffold_300451.1
Length=635
Score = 366 bits (198), Expect = 4e-100
Identities = 321/378 (85%), Gaps = 18/378 (5%)
Strand=Plus/Plus
Query 357 AGAGATTCCTGGATATGCGTTTGTGAACTTGACCAGCTTGATTTCTCTTGACATGTGTTG 416
||| ||||||||| ||| |||||||| ||||||||| || || |||||||||||| | ||
Sbjct 236 AGATATTCCTGGAGATGGGTTTGTGAGCTTGACCAGTTTTATCTCTCTTGACATGAG-TG 294
Query 417 -TAATAGATTTAACGGCTCAATTC-CTCATGAATTGTTCTCCTTGACA-AATCTTCAGCG 473
||| || ||||||||||| | || ||| ||||||||||||||||| | | ||||| |||
Sbjct 295 ATAAGAGCTTTAACGGCTCTA-TCACTCCTGAATTGTTCTCCTTGA-AGACTCTTCGGCG 352
Query 474 TCTT-GATTTAAGCAGGAATGTTATTGGCGGTACGTTGAGTGGTGACATCAAAGAGCTCA 532
||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 353 -CTTGGACTTAAGCAGGAATGTTATTGGTGGTACGTTGAGTGGTGACATCAAAGAGCTCA 411
Query 533 AGAATCTGCAGGAACTGATCTTAG-ATGAGAATCTCATTGGAGG-AGCGATTCCTTCAGA 590
|||||||||||||||||||||| | |||||||| |||||| ||| || ||||||| ||||
Sbjct 412 AGAATCTGCAGGAACTGATCTT-GTATGAGAATTTCATTG-AGGGAGAGATTCCTCCAGA 469
Query 591 AATAGGTAGTCTTGTCGAACTACTGACGCTGACCTTGA-GGCAGAACATGTTCAATAGTT 649
|||||||||||||| | |||| | ||||||||| || | ||| ||||||||||| | |||
Sbjct 470 AATAGGTAGTCTTGCCAAACTGCGGACGCTGACATT-ATGGCCGAACATGTTCAGTGGTT 528
Query 650 CCATACCGTCGTCTGTATCACGGTTAACG-AAGCTCAAAACGATAGATCTTCAGAACAAT 708
| | ||| | ||||||||||| ||| | | |||||| ||||| | ||||| |||||||||
Sbjct 529 CTAAACCATTGTCTGTATCACAGTTGA-GTAAGCTCGAAACGTTTGATCTCCAGAACAAT 587
Query 709 TTC-TTGTCTTCTAAGAT 725
| | ||||||| | ||||
Sbjct 588 T-CATTGTCTTTTGAGAT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91797490450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5