BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04260.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327388 jgi|Araly1|327388|fgenesh1_pm.C_scaffold_6002608 728 0.0
> Ahg327388 jgi|Araly1|327388|fgenesh1_pm.C_scaffold_6002608
Length=693
Score = 728 bits (394), Expect = 0.0
Identities = 493/540 (91%), Gaps = 9/540 (2%)
Strand=Plus/Plus
Query 1 ATGCGTCCATCAGATGCTGGTAAAGCTCCTTACGTGGCGCGTGTTGAGAAGATTGAAGCA 60
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 130 ATGCGTCCATCGGATGCTGGTAAGGCTCCTTACGTGGCGCGTGTTGAGAAGATTGAAGCA 189
Query 61 GATGCAAGGAACAATGTGAAGGTGCATTGTCGATGGTACTATTGTCCTGAAGAATCACAT 120
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 190 GATGCAAGGAACAATGTGAAGGTGCATTGTCGATGGTATTACCGTCCTGAAGAATCACTT 249
Query 121 GGGGGAAGGAGACAGCTCCATGGAGCTAAAGAGCTTTTCTTGTCTGATCACTTCGATGTT 180
||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 250 GGGGGAAGGAGACAGTTCCATGGAGCTAAAGAGCTCTTCTTGTCTGATCACTACGATGTT 309
Query 181 CAAAGTGCACACACCATTGAAGGAAAATGTATAGTTCACACCTTTAAAAACTACACGAGG 240
|||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 310 CAAAGTGCACACACTATTGAAGGGAAATGTATCGTTCATACCTTTAAAAACTACACAAGG 369
Query 241 CTTGAAAATGTTGGAGTGGAAGATTATTACTGTATATTTGACTATAAAGCTGCTACTGGC 300
||||||||||||||||||||||||||||| |||| ||| || ||||| ||||||||||||
Sbjct 370 CTTGAAAATGTTGGAGTGGAAGATTATTATTGTAGATTCGAGTATAAGGCTGCTACTGGC 429
Query 301 GCGTTTACTCCTGATCGAGTTGCTGTGTACTACAAATGTGAAATGCCGTATAACTCAGAT 360
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 430 GCGTTTACTCCCGATCGAGTTGCTGTGTACTGCAAATGTGAAATGCCGTATAACCCAGAT 489
Query 361 GAACTGATGGAGTTAC-T-ACTA-TGTCATT-A-TAGGGT-TCACCTAGCGTGTGTAGGC 414
|| ||||||| | | | | || || | | || | ||||| |||||||||||||
Sbjct 490 GATCTGATGGTGCAATGTGAAGGCTG-CAAGGACT-GG-TATCACCCAGCGTGTGTAGGC 546
Query 415 GTGACGATTGAAGAAGCCAAGAAGCTGGAACACTTTGTATGTGTTGAATGCAGCTCTGAC 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ATGACGATTGAAGAAGCCAAGAAGCTGGAACACTTTGTATGTGTTGAATGCAGCTCTGAC 606
Query 475 GAAGATGGAGTCAAAAGATTTCAGAACGGGTTTGCTTCATCAACAACCAATGATCTTAAG 534
||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 607 GAAGATGGAGTCAAAAGATCTCAGAACGGATTTGCTTCATCGCCAACCAATGATCTTAAG 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5