BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04320.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490084 jgi|Araly1|490084|fgenesh2_kg.6__3218__AT4G04320.2 2346 0.0
> Ahg490084 jgi|Araly1|490084|fgenesh2_kg.6__3218__AT4G04320.2
Length=1734
Score = 2346 bits (1270), Expect = 0.0
Identities = 1600/1753 (91%), Gaps = 47/1753 (3%)
Strand=Plus/Plus
Query 162 ATGAGCAAGAAAAATCTAGCGATTCTGTTGCGTGCTAGAATGAGATCCAACAATCCCTCC 221
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct 1 ATGAGCAAGAAAAATCTAGCGATTCTGCTGCGTGCTAGAATGAAATCCAACAATCCCACC 60
Query 222 AAATTTTCCCTCTCTCAATTTCCTAAGGAAATTCAATCTAATCCTCAAGAGAATCATTCT 281
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 AAATTTTCCCTCTCTCAATTTCCT---GAAATTCAATCTAATCCTCAAGAGAATCAATCT 117
Query 282 AG-AGATCACATTGTGCAAAATT-C-----------T----A----A-TGATTTTGGTAC 319
| |||||||||||| ||||||| | | | | |||||||||||
Sbjct 118 -GAAGATCACATTGTACAAAATTCCAGTGAAGGAATTGGGAATTCTAGTGATTTTGGTAA 176
Query 320 CACTGGAAGGGTTTATGATGTTGTTCGAGAGACAATGCACTCAGCTATCTCAGCTAGTAA 379
||| |||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct 177 CACAGGAAGGGTATATGATGTAGTTCGAGAAACAATGCACTCGGCTATTTCAGCGAGTAA 236
Query 380 AACTGGTGTATTAGACATTACTCTTAATGATTTTCAAGAGGGTTACTTTAGCCTTTCGCT 439
||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 237 AACCGGTGTATTAGACATTACTCTTAGTGATTTTCAAGAGGGTTACTTAAGCCTTTCGCT 296
Query 440 TGAAGACCGCGAGAAGTTACTGCTTGTTTTAGCCAAGGAGTATGATGTTAACCGAGAGCA 499
||||||||| ||||| ||||| ||||| |||||||| || |||||||||||||| |||||
Sbjct 297 TGAAGACCGTGAGAAATTACTTCTTGTATTAGCCAAAGAATATGATGTTAACCGGGAGCA 356
Query 500 AGTCCGAGAACTTGTTAAGCAATATCTTGGACTTGAAACTCCAGCTAGTGATGATGATAA 559
||| | |||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 357 AGTTCAAGAACTTGTTAAGCAATATCTTGGACTTGAAAATCCAGCTA--G-TGATGATAA 413
Query 560 GGGGGCTTTATCTTCTGTTTTCTATCGCATTGAGAGGAATCTGAGGCATGCTCTTAGGCC 619
|| | |||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||
Sbjct 414 GGATGTTTTATCTTCTGTTTTCTATCGCATTGAGCGGAATTTGAGACATACTCTTAGGCC 473
Query 620 AACATATGAAGTTTTATTTGAGAGGTTGAATACACATCCTGGAGGGTTGAGATTTTTGTC 679
||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 474 AACATATGAAGTTCTATTTGAGAGGTTGAATACCCACCCAGGAGGGTTGAGATTTTTGTC 533
Query 680 CATCCTCCGAGCTGATCTTCTGTCGATACTCTCAAAAGAGAACACGCCGTCT-TTGCGAA 738
|||||| || ||||||||||| ||||||||| ||||||| ||| |||||||| || ||||
Sbjct 534 CATCCTTCGTGCTGATCTTCTATCGATACTCACAAAAGAAAACTCGCCGTCTCTT-CGAA 592
Query 739 CATTAGATTCTTTTCTGAAGGAGAAACTCGGTATGTGGCTTAGTCCTGCCACTTTAGAGC 798
|| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CACTAGATTCCTTTCTAAAGGAGAAACTCGGTATGTGGCTTAGTCCTGCCACTTTAGAGC 652
Query 799 TTCATCAAATTACTTGGGATGATCCTGCTTCATTGCTTGAGAAAATTGTTGCATATGAGG 858
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 653 TTCATCAAATTACTTGGGATGACCCTGCTTCATTGCTTGAGAAAATTGTCGCATACGAGG 712
Query 859 CGGTGCATCCAATCAGCAACCTCTTGGATCTTAAAAGAAGATTGGGAATAGGCCGTCGAT 918
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CGGTACATCCTATCAGCAACCTCTTGGATCTTAAAAGAAGATTGGGAATAGGCCGTCGAT 772
Query 919 GCTTTGGATATTTTCATCCATCTGTTCCTGGTGAGCCACTTATTTTTATAGAAGTTGCTC 978
||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||
Sbjct 773 GCTTTGGATATTTTCATCCATCTATTCCTGGTGAACCGCTTATTTTTATCGAAGTTGCTC 832
Query 979 TTATGGAGACTGTTGCTCAGACAATTCAGGAAGTTTTGTGGGACAATCCTCCCATACCAG 1038
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTATGGAAACCGTTGCTCAGACAATTCAGGAAGTTTTGTGGGACAATCCTCCCATACCAG 892
Query 1039 AGAACCAAGCAACATGCGCTTTATTTTACTCTATTTCTTCAACTCAGCCTGGCTTAGCTG 1098
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 AGAACCAAGCAACATGCGCTTTATTTTACTCGATTTCTTCAACTCAGCCTGGCTTAGCTG 952
Query 1099 GGATAAACCTCGGAAAATTTCTGATCAAACGAGTGATTACGTTGGTGAAAAAAGACATGC 1158
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 953 GAATAAACCTCGGGAAATTTCTGATCAAACGAGTGATCACGTTGGTGAAAAAAGACATGC 1012
Query 1159 CACATGTTTCTACATTTGCAACACTTAGCCCCATTCCTGGATTCATGCAATGGCTCCTCT 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CACATGTTTCTACATTTGCAACACTTAGCCCCATTCCTGGATTCATGCAATGGCTCCTCT 1072
Query 1219 CGAAGTTATCATCTCAGTCAAGATTTGCTGAAGATGAGCGTGGTACACAGAGCAATTCGC 1278
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CAAAATTATCGTCTCAGTCAAGATTTGCTGAAGATGAGCGTGGTACACAGAGCAATTCGC 1132
Query 1279 C-TTCATCTACGTTTAGTGAGAAAGTATTACTACCAGAAGAGGAACATGCCCTCATGACT 1337
| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1133 CATT-ATCTACTTTTAGTGAGAAAGTATTACTACCAGAAGAGGAACAAGCCCTCATGAGT 1191
Query 1338 CTATCAGATGAATCTTCATCCGGTAGCAACGGTATGGAAGTTCTGTTGAATTTGCTATCA 1397
||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1192 CTATCAGATGATTCTCCATCCGGTAGCAACGGCATGGAAGTTCTATTGAATTTGCTATCA 1251
Query 1398 GTAAAGAACTGCGATTGGGCTACTTCGCCTCGCCTATTACCAGTTTTAGAACCTATTCTT 1457
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1252 GTAAAGAACTGCGACTGGGCTACTTCTCCTCGCCTATTGCCAGTTTTAGAACCTATTCTT 1311
Query 1458 ATGCGGTTATGTGCTAGGTACCTCTTGCAAGAGAAGAAGAGAGGAAAAGCTTTAGACTCT 1517
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1312 ATGCGGTTATGTGCTAGGTACCTCTTGCAAGAGAAGAAAAGAGGAAAAGCTTTAGACTCT 1371
Query 1518 GTTGCTAACTTCCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAATTGGATGGCGGAT 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GTTGCTAACTTCCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAATTGGATGGCGGAT 1431
Query 1578 CGATCAGAGAAAGGTATTCGTCAAAGTGGAGGCATTATGGTAAACTATGTCTATAGGTTA 1637
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1432 CGATCAGAGAAAGGTATTCATCAAAGTGGAGGCATCATGGTTAACTATGTCTATAGGTTA 1491
Query 1638 GAGAATATCGAAGACTATGCTCAATCGTATTTTGGGTCGGGCAAAATCCATGCCTCTCCC 1697
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1492 GAGAATATCGAAGACTATGCTCAATCGTATTTTGGGTCGGGCAAAATTCATGCCTCTCCC 1551
Query 1698 GGTATCCATTCCCGTCTCTAGGTAACTCCGCAAAGAAAATCGGGTTTTGATC-GATTTGC 1756
|||||||||||||||||||| ||||||||| ||| |||| ||||||| || || |
Sbjct 1552 GGTATCCATTCCCGTCTCTAAGTAACTCCGGAAATCAAATTGGGTTTTC-TCAGAAG-GT 1609
Query 1757 A-GGTaaaaaaaaCTAAGGTATCAAAACCTGGGAGTAACATA-GCACAATGGTATGTATA 1814
| ||| | || |||| ||||||| | || || |||| | ||||||||||||||
Sbjct 1610 AAGGTTTTAGAAT-TAAGATATCAAAGCGTGAGAATAACGCAAGCACAATGGTATGT--- 1665
Query 1815 TGTATGTACAAACGGT-TTCAAGTGTGTATACTCTCAAGACTCTATATATATGAATGTGA 1873
||||||||||||||| || | |||||||| ||||| ||||| |||||| |||||||||
Sbjct 1666 -GTATGTACAAACGGTCTT-ATGTGTGTATCCTCTCGAGACT--ATATATGTGAATGTGA 1721
Query 1874 TTCGAAGAGATAT 1886
||| || ||||||
Sbjct 1722 TTCAAATAGATAT 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5