BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04330.1
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895509 jgi|Araly1|895509|Al_scaffold_0006_3505 806 0.0
> Ahg895509 jgi|Araly1|895509|Al_scaffold_0006_3505
Length=528
Score = 806 bits (436), Expect = 0.0
Identities = 499/529 (94%), Gaps = 5/529 (1%)
Strand=Plus/Plus
Query 35 ATGGAGTCATCTTCTTCACTC---CTTCATCACTCTTACCTCTCTTACCTTAATCCAAAA 91
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCATCTTCTTCCCTCATTCTCCATCACTCTTACCTCTCTTACCTTAATCCAAAA 60
Query 92 TTTGGAAAAAGACCTTTGGTTTCTTATCCATTAATGCAGAGTTCGCGAAAATGCAAACAA 151
|||||||||||||||||| |||||| | ||||||||| || |||||||||||| ||||||
Sbjct 61 TTTGGAAAAAGACCTTTGCTTTCTTTTGCATTAATGCGGAATTCGCGAAAATGTAAACAA 120
Query 152 ACTCGCATTTGTTCTAACAAGATGTATGTTCCCGGCTTTGGAGAAGCTTCACCGGAGGCT 211
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCGAATATGTTCTAACAAGATGTATGTTCCCGGCTTTGGAGAAGCTTCACCGGAGGCT 180
Query 212 AAGGCAGCGAAGCATCTTCATGACTTCTTTACTTACGTTGCAGTGAGGATAGTGTCTGCT 271
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AAAGCAGCGAAGCATCTTCATGACTTCTTTACTTACGTTGCAGTGAGGATAGTTTCTGCT 240
Query 272 CAGCTTGAGAGTTATAATCCTGAGGCTTATATGGAGTTGAGAGAATTTTTAGATACAAAC 331
||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 241 CAGCTTGAGAGTTATAACCCTGAGGCGTATATGGAGTTGAGAGAATTTTTAGACGCAAAC 300
Query 332 TCTGTAAGTGACGGTGATAAATTCTGCGCCACTCTCATGCGTCGCTCTTCACGTCACATG 391
|||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||
Sbjct 301 TCTGTAAGTGACGGCGACAAATTTTGTGCCACTCTCATGCGTCGGTCTTCACGTCACATG 360
Query 392 AACTTAGCCCTTCGAATTTTAGAGGTACGGTCTGCTTATTGTAAAAACGATTTCGAATGG 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACTTAGCCCTTCGAATTTTAGAGGTACGGTCTGCTTATTGTAAAAACGATTTCGAATGG 420
Query 452 GATAATATGAAGCGCCTCGCCTTCAAGAACGTAGATG-ATTCCAACACAAGACTCATGCG 510
|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 421 GATAATTTGAAGCGCCTCGCCTTCAAGAACGTAGATGGAT-CCAACACAAGACTCATGCG 479
Query 511 CGAGTACGTCTTGGAGACTAGCCATGTCGAAACCGATTCTGATAAGTGA 559
|| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 TGAATACGTCTTGGAGACTAGCCATGTCGAAACCGATTCCGATAAGTGA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25961706477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5