BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04340.2
Length=2790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943210 jgi|Araly1|943210|scaffold_603754.1 3720 0.0
Ahg492658 jgi|Araly1|492658|fgenesh2_kg.7__2091__AT4G22120.2 2134 0.0
> Ahg943210 jgi|Araly1|943210|scaffold_603754.1
Length=2359
Score = 3720 bits (2014), Expect = 0.0
Identities = 2244/2355 (95%), Gaps = 15/2355 (1%)
Strand=Plus/Plus
Query 235 AGCAAAAGTAACAAAGCATGGCAACACTTAAAGACATTGGTGTATCAGCAGGGATAAACA 294
||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4 AGCAAAAGTGACAAATCATGGCAACACTTCAAGACATTGGTGTATCAGCAGGGATAAACA 63
Query 295 TCCTCACTGCATTCATTTTCTTCATAATCTTTGCGTTTTTAAGGCTTCAGCCATTCAACG 354
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 64 TCCTCACTGCATTCATTTTCTTCATTATCTTTGCTTTTTTAAGACTTCAGCCATTCAACG 123
Query 355 ACAGAGTTTACTTCTCCAAATGGTACCTCAGGGGGTTAAGAAGCAGCCCTGCAAGTGGCG 414
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 ACAGAGTTTACTTCTCGAAATGGTACCTCAAGGGGTTAAGAAGCAGCCCTGCAAGTGGCG 183
Query 415 GCGGATTCGCGGGGCGGTTTGTGAATTTGGAGTTGAGATCATACCTCAAGTTCTTGCATT 474
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 184 GTGGATTCGCGGGGCGGTTTGTGAATTTGGACTTGAGATCATACCTCAAGTTCTTGCATT 243
Query 475 GGATGCCTGAAGCTCTTAAGATGCCTGAGCGTGAGCTGATTGATCATGCTGGTTTAGACT 534
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 GGATGCCTGAAGCTCTCAAGATGCCTGAGCGTGAGCTTATTGATCATGCTGGTTTAGACT 303
Query 535 CTGTTGTCTATCTCCGGATTTACTGGCTCGGGCTTAAGATTTTTGCTCCAATAGCAATGC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTGTTGTCTATCTCCGGATTTACTGGCTCGGGCTTAAGATTTTTGCTCCAATAGCAATGC 363
Query 595 TTGCTTGGGCAGTTCTTGTACCGGTTAATTGGACAAACAACGAGTTGGAGTTGGCTAAGC 654
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 364 TTGCTTGGGCAGTTCTTGTACCGGTTAATTGGACGAACAACGAGTTGGAGTTGGCTAAGC 423
Query 655 ATTTTAAGAATGTGACTTCAAGTGATATTGACAAACTAACAATTTCGAATATCCCAGAAG 714
|||| |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 424 ATTTAAAGAATGTTACTTCAAGTGATATCGACAAGCTAACAATTTCAAATATCCCAGA-G 482
Query 715 G-TTCAAATAGGTTTTGGGCTCATATCATAATGGCTTATGCCTTTACAATCTGGACTTGT 773
|||| |||||||||||||||| || |||||||||| ||||| |||||||||||||||
Sbjct 483 TCTTCACATAGGTTTTGGGCTCACATTGTAATGGCTTACGCCTTCACAATCTGGACTTGT 542
Query 774 TATATGCTGATGAAGGAGTATGAGACAGTTGCTAACATGAGGCTTCAGTTTCTTGCCTCA 833
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 543 TATATGTTGATGAAGGAGTATGAGACAGTTGCTAATATGAGGCTTCAGTTTGTTGCCTCA 602
Query 834 GAAGGCCGTCGACCTGACCAGTTCACTGTTCTTGTTAGGAATGTACCTCCGGACCCAGAC 893
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 603 GAAGCCCGTCGACCTGACCAGTTTACTGTTCTTGTTAGGAATGTACCTCCGGACCCCGAC 662
Query 894 GAAACTGTGAGTGAGCTTGTGGAGCATTTTTTCCTAGTTAATCACCCTGATAACTACCTC 953
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 663 GAAACTGTGAGTGAGCTTGTGGAGCATTTTTTCCTAGTCAATCACCCTGATAACTACCTC 722
Query 954 ACACATCAGGTTGTATGCAATGCAAACAAGCTCGCGGATTTGGTTAGTAAAAAGACGAAG 1013
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 723 ACACATCAGGTTGTATACAACGCAAACAAGCTCGCCGATTTGGTTAGTAAAAAGAAGAAG 782
Query 1014 CTGCAGAACTGGCTTGACTATTATCAGCTCAAATACACTAGAAATAATTCTCAGATCAGA 1073
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 783 CTGCAGAATTGGCTTGACTACTATCAGCTCAAATACACTAGAAATAACTCTCAGACCAGA 842
Query 1074 CCTATAACGAAGCTTGGGTGCCTTGGCTTGTGTGGACAAAAAGTTGACGCAATCGAACAT 1133
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CCTATTACGAAGCTTGGTTGCCTTGGCTTGTGTGGACAAAAAGTTGACGCAATCGAACAT 902
Query 1134 TACATTGCTGAAGTAGATAAAACATCAAAAGAGATTGCTGAAGAGAGAGAGAATGTGGTG 1193
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 903 TACATTGCTGAAGTTGATAAAACATCAAAAGAGATTGCTGAAGAGAGGGAGAATGTGGTG 962
Query 1194 AATGATCAAAAGTCAGTCATGCCAGCATCTTTTGTCTCTTTCAAAACCCGTTGGGCTGCT 1253
||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 963 AATGATCAAAAGTCAATCATGCCAGCGTCTTTTGTCTCCTTCAAAAACCGTTGGGCTGCT 1022
Query 1254 GCTGTTTGCGCTCAGACCACGCAGACCCGAAACCCAACTGAATGGTTAACCGAATGGGCT 1313
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 1023 GCTGTTTGCGCTCAGACCACACAGACCCGAAACCCAACCGAATGGCTAACCGAATGGGCT 1082
Query 1314 GCAGAGCCGCGTGATATATATTGGCCAAACCTAGCGATTCCATATGTTTCTTTGACTGTG 1373
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1083 GCAGAGCCGCGTGATGTGTATTGGCCAAACCTTGCGATTCCATATGTTTCTTTGACTGTA 1142
Query 1374 AGAAGATT-GGTTATGAATGTAGCCTTCTTCTTCCTTACCTTCTTTTTCATCATCCCTAT 1432
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AGAA-ATTTGGTTATGAATGTAGCCTTCTTCTTCCTTACCTTCTTTTTCATCATCCCTAT 1201
Query 1433 CGCGTTTGTACAATCTCTTGCTACCATTGAAGGAATTGAGAAAGTTGCACCGTTCTTGAA 1492
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 1202 CGCGTTTGTACAATCTCTTGCTACCGTTGAGGGAATTGAGAAAGTTGCGCCGTTCTTGAA 1261
Query 1493 AGTCATTATCGAA-A-AAGATTTCATAAAATCGCTGATACAAGGTTTGCTAGCCGGTATT 1550
||||||||||||| | || |||| |||||||||||||||||||| ||||||||||||||
Sbjct 1262 AGTCATTATCGAAGATAA-ATTTG-TAAAATCGCTGATACAAGGTCTGCTAGCCGGTATT 1319
Query 1551 GCGTTGAAGCTTTTCCTCATCTTTCTGCCAGCCATACTGATGACCATGTCCAAATTTGAA 1610
| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1320 GTGCTGAAGCTTTTCCTCATCTTTCTGCCAGGCATACTGATGACCATGTCCAAATTTGAA 1379
Query 1611 GGCTTTACTTCAGTTTCATTCTTAGAAAGACGATCCGCGTCTAGATATTACATCTTTAAC 1670
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGCTTTACTTCAGTTTCATCCTTAGAAAGACGATCCGCGTCTAGATATTACATCTTTAAC 1439
Query 1671 TTAGTGAACGTCTTTCTTGGAAGTGTTATCGCTGGAGCTGCGTTTGAGCAGCTTAACTCT 1730
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTAGTGAACGTCTTTCTTGGAAATGTTATCGCTGGAGCTGCGTTTGAGCAGCTTAACTCT 1499
Query 1731 TTCCTCAATCAATCGCCTAATCAAATCCCTAAGACTATTGGCATGGCGATACCGATGAAA 1790
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1500 TTCCTCAATCAGTCGCCTAATCAAATCCCTAAGACAATTGGCATGGCGATACCGATGAAA 1559
Query 1791 GCAACCTTCTTTATCACATATATAATGGTTGATGGTTGGGCAGGAGTTGCAGGAGAGATT 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GCAACCTTCTTTATCACATATATAATGGTTGATGGTTGGGCAGGAGTTGCAGGAGAGATT 1619
Query 1851 CTTATGTTGAAACCTCTCATTATATACCACCTCAAAAACGCATTCTTGGTGAAAACAGAG 1910
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1620 CTTATGTTAAAACCTCTCATTATATACCACCTCAAAAACGCACTCTTGGTGAAAACAGAG 1679
Query 1911 AAAGACAGAGAGGAAGCAATGAACCCGGGAAGCATCGGTTTCAACACTGGAGAGCCTCAG 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 AAAGACAGAGAGGAAGCAATGAACCCGGGAAGCATCGGTTTCAACACTGGAGAGCCTCAG 1739
Query 1971 ATACAGCTTTACTTCCTTCTTGGTCTTGTCTATGCTCCTGTGACACCAATGCTTCTTCCT 2030
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1740 ATACAGCTTTACTTCCTTCTCGGTCTTGTCTATGCTCCCGTGACACCAATGCTTCTTCCT 1799
Query 2031 TTTATCTTAGTCTT-TTTCGCTCTTGCTTATGTCGTATACCGCCATCAGATCATAAATGT 2089
||||||||| |||| ||| || |||||||| |||||||| ||||||||||||||||||||
Sbjct 1800 TTTATCTTAATCTTCTTT-GCGCTTGCTTACGTCGTATATCGCCATCAGATCATAAATGT 1858
Query 2090 GTATAATCAAGAGTATGAGAGCGCTGCTGCGTTTTGGCCGGATGTTCATGGACGGGTTAT 2149
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1859 GTATAATCAAGAGTATGAGAGCGCTGCTGCGTTTTGGCCAGATGTTCATGGACGGGTTAT 1918
Query 2150 AACGGCATTGATCATATCTCAGTTGCTTCTGATGGGTTTGTTAGGTACAAAACATGCCGC 2209
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1919 AACGGCATTGATCATATCTCAGTTGCTTCTGATGGGTTTGATAGGTACAAAACATGCCGC 1978
Query 2210 TTCAGCTGCTCCGTTTCTCATTGCTCTTCCTGTGATTACTATCGGTTTCCACCGCTTCTG 2269
|| |||||| ||||||||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 1979 TTTAGCTGCACCGTTTCTCATCGCTCTTCCCGTGATTACCATCAGTTTCCACCGCTTCTG 2038
Query 2270 TAAAGGCCGTT-TCGAACCTGCCTTTGTCCGTTACCCCTTACAGGAAGCTATGATGAAAG 2328
||||||||||| | ||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 2039 TAAAGGCCGTTAT-GAACCCGCCTTTATCCGATACCCCTTACAGGAAGCTATGATGAAAG 2097
Query 2329 ATACATTGGAAAGAGCAAGAGAGCCAAATCTGAACCTGAAAGGTTACTTGCAAGACGCTT 2388
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2098 ATACATTGGAAAGAGCAAGAGAGCCTAATCTGAACCTGAAAGGTTACTTGCAAGACGCTT 2157
Query 2389 ATATTCATCCGGTTTTTAAAGGCGGTGATAATGATGACGACGGTGACATGATCGGAAAAT 2448
|||||||||| ||||| |||||||||||| || ||||||||||||||||| |||||||
Sbjct 2158 ATATTCATCCTGTTTTCAAAGGCGGTGAT---GACGACGACGGTGACATGATTGGAAAAT 2214
Query 2449 TGGAGAATGAAGTCATCATAGTGCCAACAAAACGCCAATCGCGGAGGAACACTCCTGCAC 2508
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2215 TGGAGAATGAAGTCATCATAGTGCCAACAAAACGCCAATCGCGGAGGAACACTCCCGCGC 2274
Query 2509 CGAGCAGAATCAGCGGTGAATCGTCTCCATCTTTGGCCGTTATTAACGGTAAAGAAGTCT 2568
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 CAAGCCGAATCAGCGGTGAATCGTCTCCATCTTTGGCCGTTATTAACGGTAAAGAAGTCT 2334
Query 2569 AGTTTAACGGTTTCA 2583
|||||||| ||||||
Sbjct 2335 AGTTTAACTGTTTCA 2349
> Ahg492658 jgi|Araly1|492658|fgenesh2_kg.7__2091__AT4G22120.2
Length=2920
Score = 2134 bits (1155), Expect = 0.0
Identities = 1970/2360 (83%), Gaps = 69/2360 (3%)
Strand=Plus/Plus
Query 252 ATGGCAACACTTAAAGACATTGGTGTATCAGCAGGGATAAACATCCTCACTGCATTCATT 311
||||| |||||| | || |||||||||||||| ||||||||||| |||| |||||| ||
Sbjct 487 ATGGCGACACTTCAGGATATTGGTGTATCAGCTGGGATAAACATTCTCAGTGCATTTGTT 546
Query 312 TTCTTCATAATCTTTGCGT-TTTTAAGGCTTCAGCCATTCAACGACAGAGTTTACTTCTC 370
|||||||| |||||||| | |||| ||||||||||| ||||| || ||||||||||||||
Sbjct 547 TTCTTCATCATCTTTGC-TATTTTGAGGCTTCAGCCTTTCAATGATAGAGTTTACTTCTC 605
Query 371 CAAATGGTACCTCAGGGGGTTAAGAAGCAGCCCTGCAAGTGGCGGCGGATTCGCGGGGCG 430
|||||||| |||| ||||||||||||||||||| | |||| |||| || ||| |||
Sbjct 606 AAAATGGTATCTCAAGGGGTTAAGAAGCAGCCCTTCGCGTGGTGGCGCCTTTGCGCAGCG 665
Query 431 GTTTGTGAATTTGGAGTTGAGATCATACCTCAAGTTCTTGCATTGGATGCCTGAAGCTCT 490
|||||||| |||| || || || || | ||||||||| |||||||||| || ||| |
Sbjct 666 CTTTGTGAACCTGGACTTCAGGTCTTATGTGAAGTTCTTGAATTGGATGCCAGAGGCT-T 724
Query 491 T-AAGATGCCTGAGCGTGAGCTGATTGATCATGCTGGTTTAGACTCTGTTGTCTATCTCC 549
| ||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||
Sbjct 725 TGAAGATGCCTGAGCCTGAGCTGATTGATCATGCTGGTTTGGATTCAGTTGTTTATCTCC 784
Query 550 GGATTTACTGGCTCGGGCTTAAGATTTTTGCTCCAATAGCAATGCTTGCTTGGGCAGTTC 609
||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 785 GGATTTACTGGCTGGGGCTGAAGATCTTTGCTCCAATAGCAGTGCTTGCTTGGGCAGTTC 844
Query 610 TTGTACCGGTTAATTGGACAAACAACGA-GTTGGAGTTGGCTAAGCATTTTAA-GAATGT 667
|||| || || || |||||||| ||| | ||||| ||||||| || ||| ||||||
Sbjct 845 TTGTGCCAGTCAACTGGACAAATAAC-ACACTGGAGATGGCTAAACA-GCTAAGGAATGT 902
Query 668 GACTTCAAGTGATATTGACAAACTAACAATTTCGAATATCCCAGAAG-GTTCAAAT-AGG 725
||||| || || ||||||||||| | |||| ||||| |||| || ||| ||| |||
Sbjct 903 AACTTCGAGCGACATTGACAAACTCTCTGTTTCAAATATTCCAG-AGTATTC-AATGAGG 960
Query 726 TTTTGGGCTCATATCA-TAATGGCTTATGCCTTTACAATCTGGACTTGTTATATGCTGAT 784
|||||| ||||||| | ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 961 TTTTGGACTCATAT-AGTAATGGCTTATGCCTTTACCATCTGGACTTGTTATGTGCTGAT 1019
Query 785 GAAGGAGTATGAGACAGTTGCTAACATGAGGCTTCAGTTTCTTGCCTCAGAAGGC-CGTC 843
||| || ||||||||| |||||||||||||||| |||||| |||| || ||| || ||||
Sbjct 1020 GAAAGAATATGAGACAATTGCTAACATGAGGCTCCAGTTTGTTGCATCTGAA-GCTCGTC 1078
Query 844 GACCTGACCAGTTCACTGTTCTTGTTAGGAATGTACCTCCGGACCCAGACGAAACTGTGA 903
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||| |
Sbjct 1079 GACCTGACCAGTTCACTGTTCTGGTTAGGAATGTACCTCCGGACGCAGATGAATCTGTAA 1138
Query 904 GTGAGCTTGTGGAGCATTTTTTCCTAGTTAATCACCCTGATAACTACCTCACACATCA-G 962
|||| || ||||||||||||||||| || ||||| |||||| ||||||| |||||||| |
Sbjct 1139 GTGAACTGGTGGAGCATTTTTTCCTGGTCAATCATCCTGATCACTACCTGACACATCAGG 1198
Query 963 -----GTTGTATGCAATGCAAACAAGCTCGCGGATTTGGTTAGTAAA-AAGACGAAGCTG 1016
||||||||||||||||||||||| || |||||||| | ||| |||| ||||||
Sbjct 1199 CAAATGTTGTATGCAATGCAAACAAGCTTGCCGATTTGGTGA-AAAAGAAGAAAAAGCTG 1257
Query 1017 CAGAACTGGCTTGACTATTATCAGCTCAAATACACTA-GAAATAATTCTCAGATCAGACC 1075
||||| |||||||| || || |||||||||||| ||| |||| || |||||| |||
Sbjct 1258 CAGAATTGGCTTGATTACTACCAGCTCAAATACGCTAGGAAA-AACTCTCAG---AGAAT 1313
Query 1076 TATAACGAAGCTTGGGTGCCTT-GGCTTGTGTGGACAAAAAGTTGACGCAATCGAACATT 1134
||| ||||||||| | ||| ||| | || ||||||||||| || || || |||||||
Sbjct 1314 TATGGTGAAGCTTGGCTTTCTTGGGC-TATGGGGACAAAAAGTCGATGCCATTGAACATT 1372
Query 1135 ACATTGCTGAAGTAGATAAAACATCAAAAGAGAT-TGCTGAAGAGAGAGA-GAATGTGGT 1192
||||||||||| | || |||| |||||||||||| | | |||| ||||| ||| |||||
Sbjct 1373 ACATTGCTGAAATTGACAAAATATCAAAAGAGATCAG-TAAAGAAAGAGAGGAA-GTGGT 1430
Query 1193 GAATGATCAAAAGT-CAGTCATGCCAGCAT-CTTTTGTCT-CTTTCAAAACCCGTTGGGC 1249
|||||||| |||| || | |||||||| | | ||||||| |||| |||||||| |||||
Sbjct 1431 GAATGATCCCAAGTCCA-TTATGCCAGC-TGCATTTGTCTCCTTT-AAAACCCGATGGGC 1487
Query 1250 TGCTGCTGTTTGCGCTCAGAC-CACGCAGACCCGAAACCCAACTGAATGGTTAACCGAAT 1308
|||||||||||| |||||||| || ||||||||||||||||| | ||| | |||||||
Sbjct 1488 TGCTGCTGTTTGTGCTCAGACTCA-ACAGACCCGAAACCCAACCCAGTGGCTGACCGAAT 1546
Query 1309 GGGCTGCAGAGCCGCGTGATATATATTGGCCAAACCTAGCGATTCCATATGTTTCTTTGA 1368
||||| |||| ||||||||| | | |||| |||| || || |||||||||||||||||||
Sbjct 1547 GGGCTCCAGAACCGCGTGATGTGTTTTGGTCAAATCTTGCTATTCCATATGTTTCTTTGA 1606
Query 1369 CTGTGAGAAGATTGGTTATGAATGTAGCCTTCTTCTTCCTTACCTTCTTTTTCATCATCC 1428
| || || || || | ||| |||| |||||||||||||| |||||||| ||||| ||||
Sbjct 1607 CAGTAAGGAGGTTAATCATGCATGTTGCCTTCTTCTTCCTAACCTTCTTCTTCATTATCC 1666
Query 1429 CTATCGCGTTTGTACAATCTCTTGCTACCATTGAAGGAATTGAGAAAGTTGCACCGTTCT 1488
| ||||||||||| ||||||||||||||||||||||| |||| ||||| ||| |||||||
Sbjct 1667 CCATCGCGTTTGTTCAATCTCTTGCTACCATTGAAGGGATTGTGAAAGCTGCTCCGTTCT 1726
Query 1489 TGAAAG-TCATTATCGA--AAAAGATTTCATAAAATCGCTGATACAAGGTTTGCTAGCC- 1544
|| ||| | ||| | || | || | ||||| |||||| ||||||||||||| ||| ||
Sbjct 1727 TG-AAGTTTATTGTAGAGGATAA-A-TTCATGAAATCGGTGATACAAGGTTTTCTA-CCG 1782
Query 1545 GGTATTGCGTTGAAGCTTTTCCTCATCTTTCTGCCAGCCATACTGATGACCATGTCCAAA 1604
||||| || ||||| |||||||| |||||||||| |||| |||||| ||||||||||
Sbjct 1783 GGTATCGCACTGAAGATTTTCCTCGCCTTTCTGCCATCCATTCTGATGGTCATGTCCAAA 1842
Query 1605 TTTGAAGGCTTTACTTCAG-TTTCATTC-TTAGAAAGACGATCCGCGTCTAGATATTACA 1662
||||||||||| || || | | ||| || ||||| |||||| | |||| | |||||||||
Sbjct 1843 TTTGAAGGCTTCACATC-GATCTCA-TCTTTAGAGAGACGAGCAGCGTTTCGATATTACA 1900
Query 1663 TCTTTAACTTAGTGAACGTCTTTCTTGGAAGTGTTATCGCTGGAGCTGCGTTTGAGCAGC 1722
|||| ||||| |||||||||||||||| |||||||||| ||||||||||||| || ||||
Sbjct 1901 TCTTCAACTTGGTGAACGTCTTTCTTGCAAGTGTTATCACTGGAGCTGCGTTCGAACAGC 1960
Query 1723 TTAACTCTTTCCTCAATCAATCGCCTAATCAAATCCCTAAGACTATTGGCATGGCGATAC 1782
|||||||||||||||||||||| || || |||||||| || || ||||| |||||||||
Sbjct 1961 TTAACTCTTTCCTCAATCAATCCCCAAACCAAATCCCCAAAACCATTGGTGTGGCGATAC 2020
Query 1783 CGATGAAAGCAACCTTCTTTATCACATATATAATGGTTGATGGTTGGGCAGGAGTTGCAG 1842
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2021 CGATGAAAGCAACTTTCTTCATCACGTATATAATGGTTGATGGTTGGGCAGGAGTTGCAG 2080
Query 1843 GAGAGATTCTTATGTTGAAACCTCTCATTATATACCACCTCAAAAACGCATTCTTGGTGA 1902
|||||||||| ||| ||||||| || ||||| | ||| ||||||||||| |||||||| |
Sbjct 2081 GAGAGATTCTAATGCTGAAACCACTGATTATGTTCCATCTCAAAAACGCCTTCTTGGTTA 2140
Query 1903 AAACAGAGAAAGACAGAGAGGAAGCAATGAACCCGGGAAGCATCGGTTTCAACACTGGAG 1962
| || |||||||||||||| ||||||||| ||||||||||||||||||| ||||| || |
Sbjct 2141 AGACTGAGAAAGACAGAGAAGAAGCAATGGACCCGGGAAGCATCGGTTTTAACACAGGCG 2200
Query 1963 AGCCTCAGATACAGCTTTACTTCCTTCTTGGTCTTGTCTATGCTCCTGTGACACCAATGC 2022
|||||| ||||||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||
Sbjct 2201 AGCCTCGGATACAGCTCTACTTTCTTCTCGGTCTTGTCTACGCTCCCGTGACACCGATGC 2260
Query 2023 TTCTTCCTTTTATCTTAGTCTTTTTCGCTCTTGCTTATGTCGTATACCGCCATCAGATCA 2082
|||||||||||||||||||||| ||||| |||||||| | || || ||||| || ||||
Sbjct 2261 TTCTTCCTTTTATCTTAGTCTTCTTCGCCCTTGCTTACATTGTGTATCGCCACCAAATCA 2320
Query 2083 TAAATGTGTATAATCAAGAGTATGAGAGCGCTGCTGCGTTTTGGCCGGATGTTCATGGAC 2142
| || || || || ||||| || ||||||||||| ||||||||||| || ||||||||||
Sbjct 2321 TTAACGTATACAACCAAGAATACGAGAGCGCTGCAGCGTTTTGGCCAGACGTTCATGGAC 2380
Query 2143 GGGTTATAACGGCATTGATCATATCTCAGTTGCTTCTGATGGGTTTGTTAGGTACAAAAC 2202
| || ||| ||||||| || ||||| |||||||||||||||||| | || || ||||| |
Sbjct 2381 GAGTCATAGCGGCATTAATAATATCACAGTTGCTTCTGATGGGTCTATTGGGAACAAAGC 2440
Query 2203 ATGCCGC-TTCAGCTGCTCCGTTTCTCATTGCTCTT-CCTGTGATTACTATCGGTTTCCA 2260
| || || || |||||| || |||||||||||| || |||||| |||| |||||||||||
Sbjct 2441 ACGCTGCATT-AGCTGCACCTTTTCTCATTGCT-TTGCCTGTGCTTACCATCGGTTTCCA 2498
Query 2261 CCGCTTCTGTAAAGGCCGTT-TCGAACCTGCCTTTGTCCGTTACCCCTTACAGGAAGCTA 2319
|| |||||| ||||| |||| | || || ||||| || | ||||| |||||||||||||
Sbjct 2499 CCACTTCTGCAAAGGTCGTTAT-GAGCCAGCCTTCATCAGATACCCTTTACAGGAAGCTA 2557
Query 2320 TGATGAAAGATACATTGGAAAGAGCAAGAGAGCCAAATCTGAACCTGAAAGGTTACTTGC 2379
|||||||||||||||||||||| |||||||| ||||| || ||||| ||||| |||||||
Sbjct 2558 TGATGAAAGATACATTGGAAAGCGCAAGAGAACCAAACCTCAACCTTAAAGGCTACTTGC 2617
Query 2380 AAGACGCTTATATTCATCCGGTTTTTAAAGGCGGTGATA-ATGATGACGACG--G-TGAC 2435
|| | ||||| |||||||| ||||| ||||||| ||| | | ||||| ||| | ||||
Sbjct 2618 AAAATGCTTACATTCATCCAGTTTTCAAAGGCGATGA-AGACGATGATGACATTGATGAC 2676
Query 2436 ATGATCGGAAAATTGGAGAATGAAGTCATCATAGTGCCAACAAAACGCCAATCGCGGAGG 2495
| | |||| || || ||| |||||| |||||| || || || ||||| || ||||||||
Sbjct 2677 AAGCTCGGGAAGTTTGAGGATGAAGCCATCATTGTTCCCACCAAACGTCAGTCGCGGAGA 2736
Query 2496 AACACTCCTGCACCGAGCAGAATCAGCGGTGAATCGTCTCCATCTTTGGCCGTTATTAAC 2555
|| ||||| || || ||||||||||| || ||| || || |||||| || ||| |
Sbjct 2737 AATACTCCGGCTCCTAGCAGAATCAGTGGGGAAGATTCGCCGTCTTTGCCCTTTAGT--- 2793
Query 2556 GGTAAAGAAGTCTAGTTTAA 2575
|||||| |||||||| |||
Sbjct 2794 GGTAAACTAGTCTAGTCTAA 2813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105281437180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5