BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04360.1

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895513 jgi|Araly1|895513|Al_scaffold_0006_3509                    549    8e-156
  Ahg943213 jgi|Araly1|943213|scaffold_603757.1                        322    2e-87 


> Ahg895513 jgi|Araly1|895513|Al_scaffold_0006_3509
Length=315

 Score =  549 bits (297),  Expect = 8e-156
 Identities = 309/315 (98%), Gaps = 0/315 (0%)
 Strand=Plus/Plus

Query  286  ATGAGGCACGAGGAAGGGAGTGAAGAGAGCGAGAGTAGTTTTACTGAAATGGTAGCTGAA  345
            |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  1    ATGAGGCACGAGGAAGGGAGTGAAGAGAACGAGAGTAGTTTCACTGAAATGGTAGCTGAA  60

Query  346  GAGCTGAAGCTAAGAGAAGCACAAGCTCAAGAAGACGAATGGCGTGCAGATAGGTTGCTG  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAGCTGAAGCTAAGAGAAGCACAAGCTCAAGAAGACGAATGGCGTGCAGATAGGTTGCTG  120

Query  406  CTAGATGCTAAGAAAGCGGCGTCTCAGTATCAGAAAGAGGCTGATAAATGCAGTATGGGG  465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTAGATGCTAAGAAAGCGGCGTCTCAGTATCAGAAAGAGGCTGATAAATGCAGTATGGGG  180

Query  466  ATGGAAACATGTGAGCTAGCAAGAGAGAAAGCAGAAGCAGCTCTAGATGAACAGAGAAGA  525
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  181  ATGGAAACATGTGAGCTAGCAAGAGAGAAAGCAGAGGCAACTCTAGATGAACAGAGAAGA  240

Query  526  CTTTCTTACATGTGGGAGCTTCGAGCTCGGCAAGGAGGATGGAAAGAAGGAACTGTTGCT  585
            || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  241  CTATCTTACATGTGGGAGCTTCGAGCTCGGCAAAGAGGATGGAAAGAAGGAACTGTTGCT  300

Query  586  TCTGATGTTATCTAA  600
            |||||||||||||||
Sbjct  301  TCTGATGTTATCTAA  315


> Ahg943213 jgi|Araly1|943213|scaffold_603757.1
Length=289

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 197/208 (95%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  52   agaaag-aa-atagagagagatgaccagaaggcagaagaagaCGGCGAAGGTGGTAACAG  109
            |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGAAAGTAATAAAGAGAGAGATGACCAGAAGGCAGAAGAAGACGGCGAAGGTGGTAACAG  60

Query  110  TGGTAATGGGACTGTGTATTGTCGCATATATTGCAGGACCGTCTCTGTATTGGCATCTCA  169
            ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  61   TGGTAATGGGATTGTGTATTGTCGCCTACATTGCAGGACCGTCTCTGTATTGGCATCTCA  120

Query  170  ATGAGACCATTGCAGATTCTCTCCACTCCTCTTGTCCTCCTTGTGTATGTGATTGTTCTT  229
            | |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct  121  ACGAGACCATTGCAGATTCTCTCCACTCCTCTTGCCCACCTTGTGTATGTGACTGTTCTT  180

Query  230  CTCAGCCTCTCCTCTCCATTCCCGACGG  257
            ||||||||||||||||||| ||||||||
Sbjct  181  CTCAGCCTCTCCTCTCCATCCCCGACGG  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22092086031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5