BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04360.1 Length=603 Score E Sequences producing significant alignments: (Bits) Value Ahg895513 jgi|Araly1|895513|Al_scaffold_0006_3509 549 8e-156 Ahg943213 jgi|Araly1|943213|scaffold_603757.1 322 2e-87 > Ahg895513 jgi|Araly1|895513|Al_scaffold_0006_3509 Length=315 Score = 549 bits (297), Expect = 8e-156 Identities = 309/315 (98%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 286 ATGAGGCACGAGGAAGGGAGTGAAGAGAGCGAGAGTAGTTTTACTGAAATGGTAGCTGAA 345 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 1 ATGAGGCACGAGGAAGGGAGTGAAGAGAACGAGAGTAGTTTCACTGAAATGGTAGCTGAA 60 Query 346 GAGCTGAAGCTAAGAGAAGCACAAGCTCAAGAAGACGAATGGCGTGCAGATAGGTTGCTG 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAGCTGAAGCTAAGAGAAGCACAAGCTCAAGAAGACGAATGGCGTGCAGATAGGTTGCTG 120 Query 406 CTAGATGCTAAGAAAGCGGCGTCTCAGTATCAGAAAGAGGCTGATAAATGCAGTATGGGG 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTAGATGCTAAGAAAGCGGCGTCTCAGTATCAGAAAGAGGCTGATAAATGCAGTATGGGG 180 Query 466 ATGGAAACATGTGAGCTAGCAAGAGAGAAAGCAGAAGCAGCTCTAGATGAACAGAGAAGA 525 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 181 ATGGAAACATGTGAGCTAGCAAGAGAGAAAGCAGAGGCAACTCTAGATGAACAGAGAAGA 240 Query 526 CTTTCTTACATGTGGGAGCTTCGAGCTCGGCAAGGAGGATGGAAAGAAGGAACTGTTGCT 585 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 CTATCTTACATGTGGGAGCTTCGAGCTCGGCAAAGAGGATGGAAAGAAGGAACTGTTGCT 300 Query 586 TCTGATGTTATCTAA 600 ||||||||||||||| Sbjct 301 TCTGATGTTATCTAA 315 > Ahg943213 jgi|Araly1|943213|scaffold_603757.1 Length=289 Score = 322 bits (174), Expect = 2e-87 Identities = 197/208 (95%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 52 agaaag-aa-atagagagagatgaccagaaggcagaagaagaCGGCGAAGGTGGTAACAG 109 |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAAAGTAATAAAGAGAGAGATGACCAGAAGGCAGAAGAAGACGGCGAAGGTGGTAACAG 60 Query 110 TGGTAATGGGACTGTGTATTGTCGCATATATTGCAGGACCGTCTCTGTATTGGCATCTCA 169 ||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 61 TGGTAATGGGATTGTGTATTGTCGCCTACATTGCAGGACCGTCTCTGTATTGGCATCTCA 120 Query 170 ATGAGACCATTGCAGATTCTCTCCACTCCTCTTGTCCTCCTTGTGTATGTGATTGTTCTT 229 | |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct 121 ACGAGACCATTGCAGATTCTCTCCACTCCTCTTGCCCACCTTGTGTATGTGACTGTTCTT 180 Query 230 CTCAGCCTCTCCTCTCCATTCCCGACGG 257 ||||||||||||||||||| |||||||| Sbjct 181 CTCAGCCTCTCCTCTCCATCCCCGACGG 208 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22092086031 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5