BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04375.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511 435 4e-121
Ahg930679 jgi|Araly1|930679|scaffold_303136.1 134 2e-30
Ahg930816 jgi|Araly1|930816|scaffold_303273.1 62.1 9e-09
Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 56.5 4e-07
Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011 56.5 4e-07
Ahg930838 jgi|Araly1|930838|scaffold_303295.1 54.7 1e-06
Ahg930817 jgi|Araly1|930817|scaffold_303274.1 54.7 1e-06
Ahg930067 jgi|Araly1|930067|scaffold_302524.1 52.8 5e-06
> Ahg895515 jgi|Araly1|895515|Al_scaffold_0006_3511
Length=708
Score = 435 bits (235), Expect = 4e-121
Identities = 393/464 (85%), Gaps = 32/464 (7%)
Strand=Plus/Plus
Query 661 CTTAGTCAGTTTTGATTATA-AAACAGAGAGATTTGAACGTATGTGTCTTCCGTCGTGTC 719
|||||||||||||||||||| ||| |||||||||||||||| || ||||| | |||||
Sbjct 267 CTTAGTCAGTTTTGATTATACAAA-AGAGAGATTTGAACGTCTGGGTCTT-C--CGTGT- 321
Query 720 ACATAGCAACTATGTTGGGAACTTTGGCTCTCTCCGTTGTTAAAGAAGAAAAACTTATTG 779
| | | | | | |||||| |||||||||| |||||| |||||||||||||| |
Sbjct 322 -C--A-C--C---G-T-GGAACTGCGGCTCTCTCCTTTGTTAGAGAAGAAAAACTTACCG 370
Query 780 TGTTATTACATGGCGCAAATACATCAAAGACAGAAATATGGCTAACAAATAAGATTGATG 839
|||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 371 TGTTATTACATGACGCAAATACATCAAGGACAGAAATATGGGTGACAAATAAGATTGATG 430
Query 840 AG-ACCAAAGTGGTGTCGTGGAGCATGGTCTTAGCAATGGATCACCTTGAGTTTGATATT 898
| |||||||||||| |||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 431 -GTACCAAAGTGGTGGCGTGGAGCATGGTCTTAGCAATGGATCACCCTGAACTTG-TTTT 488
Query 899 T-GGTCTAACGTAAGGCTTATTTT--T-GACGAGGAGAAGAGATTCGGTGTGTGTTGTAA 954
| ||| || |||| | || |||| | |||||||||||||||| || |||||||||
Sbjct 489 TGGGTTTAGGGTAA-G-TT-TTTTGGTCGACGAGGAGAAGAGATGCGTTGTGTGTTGGGG 545
Query 955 TCGGAAACGTAGGGTCAAGAATGGCAAGATTCACTGTGAATG-CATAGTACACATAATTG 1013
|| |||||||| ||||||| ||||||||||||||| || | ||| |||||||||||||
Sbjct 546 TCAGAAACGTATGGTCAAGGATGGCAAGATTCACT-ACAAAGTCATGGTACACATAATTG 604
Query 1014 AGGAGGATAATAAAGTGACAAAAGTGGATTTTGCAGCATCTA-AGT-TG-TCATATCTGC 1070
| |||||||||||||| |||||||||||||||||| |||||| | | | ||||||| ||
Sbjct 605 ATGAGGATAATAAAGTTACAAAAGTGGATTTTGCACCATCTACAATGAGTTCATATCGGC 664
Query 1071 CACTTTTGTTCAATTATGTTCCAAGTTTGGTTCAAATCCAGTGA 1114
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct 665 CACTTTTGCTCAATTATGTTCCAAGTTTGGTTCAAATCCAGTGA 708
> Ahg930679 jgi|Araly1|930679|scaffold_303136.1
Length=1135
Score = 134 bits (72), Expect = 2e-30
Identities = 604/844 (72%), Gaps = 104/844 (12%)
Strand=Plus/Plus
Query 79 TACGATCTACTTGCAAAAC-ATGGAACCATTTATTCAACGATACA-AGATTCGCAA-AAA 135
|||||| ||||||| |||| |||||||| |||||||||||||| | |||||||||| |||
Sbjct 99 TACGATGTACTTGC-AAACTATGGAACCGTTTATTCAACGATA-AGAGATTCGCAAGAAA 156
Query 136 AGCACTT-CGATAAAGCCGTAAGACAATATCTAG-CTCTCACGATCACAAAGGAATTTAG 193
| ||||| || ||||||| ||| |||| ||| | ||||| | | || ||||||||
Sbjct 157 A-CACTTCCG-TAAAGCCCCAAGGCAATCTCT-GATTCTCATG-T--TGAA-GAATTTAG 209
Query 194 GG-TTTATTTGTTGAACTTTAATCTCTA-TG-G--------AT-GTA-A-CA--GGTGAA 237
|| ||| || | ||| ||| |||||| | | | || | | | || ||||||
Sbjct 210 GGTTTTCTTCGATGAGCTTCAATCTCCACCGAGTTTCACCAATAG-AGATCATTGGTGAA 268
Query 238 CTTAGCATAATCAATTCTCATTCTTA-TTTA-AACTTA-GC-TGATATAGAGGAAG-TTT 292
|||| | ||||| | ||||||| || || | | | || | ||| || ||| | |
Sbjct 269 CTTAACCTAATCGACCCTCATTC-TAGTTCATATC-TATTCAAGATCTA-TCAAAGCTAT 325
Query 293 TGCACTAC-GATGGCTTATTGTTAT--GT-ACCATTAT-GAGAGGTTGCCCTAGACTCGT 347
|| | | || || |||||||||| || | || || ||| || | |||| |||||
Sbjct 326 CACAGTTCAGACGGTTTATTGTTATGCGTCAACAACATGGAG-GGAAGTACTAGGCTCGT 384
Query 348 AGTTTGGAACCCGTGTACTGGTCAAACCAAGTGGATTCAA-ATCA-ATTCAAGTT-G-CT 403
|| |||||||||||||||||||||||||||||||| ||| | || | ||| | | ||
Sbjct 385 GGTATGGAACCCGTGTACTGGTCAAACCAAGTGGATCCAACA-CAGA---AAGATAGGCT 440
Query 404 ACTACGG-A--TATGCTCTTGGATCTTGGCAAGACAAGGAATTCAGAAATAATAATAGCT 460
||| | | | ||| |||||||||| | |||||||| ||| | ||||||||| |||
Sbjct 441 ACTTCTGCACCTATTCTCTTGGATCCTACCAAGACAACAAATCCGGAAATAATA---GCT 497
Query 461 ACAAAATATTGAGCTATA--ATTATTTTGATATTCACAAG-CAAAACTTCGCTGTGACAT 517
|||||||||||||| || |||| | | || || || | ||| || | ||| ||
Sbjct 498 ACAAAATATTGAGCCGTAGGATTAATG-GTTACCCAGAATTCGAAA-TT---TATGAGAT 552
Query 518 AAAGTCTAATTCATGGAGGAATCTTGACGTCACTCCGGACTGTCGC-TTAGTGAATGCTA 576
|| || |||||||||||| ||||||| |||||| |||||| | | || | | || ||
Sbjct 553 TAACTCAAATTCATGGAGGCATCTTGATGTCACTGTGGACTG-CACCTT--T-A-TG-TA 606
Query 577 GTCTTTACAGCGTATCTTTGAAAGGAAGGACTTACTAATTTGCT-GC--TCCATT-GACA 632
||| | | ||| |||||||| |||| |||||||| |||||| | | | || |
Sbjct 607 C-CTTCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGATGAAAAAGAGA 665
Query 633 ACCATCTTTCGGAAGAGA-CACACCTCGGCTTAGTCAGTTTTGATTATAAAACAGAGAGA 691
| || ||| || | | | | | | | ||||||||||||||| |||||| |||
Sbjct 666 AACAGCTT--GGCTTA-ATCTTAA-T-G----A-TCAGTTTTGATTATACAACAGAAAGA 715
Query 692 TTTGAACGTATGTGTCTTCCGTCGTGTCACATAGCAACT-ATGTTGGGAACTTTGGCTCT 750
||||||||| | |||||||| | | || | || || || | ||| ||| | |
Sbjct 716 TTTGAACGTCTACATCTTCCGTA-TA--AG-TATC--CTGATTTTCGAAACATTGATTTT 769
Query 751 CTCCGTTGTTAAAGAAGAAAAACTTATT-GTGTTATTACATGGCGCAAA-T-ACATCAAA 807
|| ||||||| ||| || |||||| | ||||||||||| ||||| | ||| | ||
Sbjct 770 -TCTGTTGTTAGAGACGAGAAACTT-TCCGTGTTATTACAA--CGCAACCTTACACCGAA 825
Query 808 GACAGAAATATGGCTAACAAATAAGATTGATGAGACCAAAGTGGTGTCGTGGAGCATGGT 867
||||||||||||| | ||||||||||||| ||||||||||||| |||| |||| || ||
Sbjct 826 GACAGAAATATGGGTGACAAATAAGATTGGTGAGACCAAAGTGTTGTCTTGGATCAAGGG 885
Query 868 CTTA 871
||||
Sbjct 886 CTTA 889
> Ahg930816 jgi|Araly1|930816|scaffold_303273.1
Length=847
Score = 62.1 bits (33), Expect = 9e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1079 TTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 1111
|||||||||||||||||||||||||||||||||
Sbjct 767 TTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 799
> Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703
Length=1092
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1079 TTCAATTATGTTCCAAGTTTGGTTCAAATC 1108
||||||||||||||||||||||||||||||
Sbjct 1024 TTCAATTATGTTCCAAGTTTGGTTCAAATC 1053
> Ahg318995 jgi|Araly1|318995|fgenesh1_pm.C_scaffold_3002011
Length=1152
Score = 56.5 bits (30), Expect = 4e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1079 TTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 1111
|||| ||||||||||||||||||||||||||||
Sbjct 1096 TTCAGTTATGTTCCAAGTTTGGTTCAAATCCAG 1128
> Ahg930838 jgi|Araly1|930838|scaffold_303295.1
Length=1166
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1079 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1107
|||||||||||||||||||||||||||||
Sbjct 1114 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1142
> Ahg930817 jgi|Araly1|930817|scaffold_303274.1
Length=1060
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1079 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1107
|||||||||||||||||||||||||||||
Sbjct 999 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1027
> Ahg930067 jgi|Araly1|930067|scaffold_302524.1
Length=430
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1083 ATTATGTTCCAAGTTTGGTTCAAATCCA 1110
||||||||||||||||||||||||||||
Sbjct 370 ATTATGTTCCAAGTTTGGTTCAAATCCA 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5