BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04390.1
Length=2892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917590 jgi|Araly1|917590|Al_scaffold_0008_2341 150 5e-35
> Ahg917590 jgi|Araly1|917590|Al_scaffold_0008_2341
Length=942
Score = 150 bits (81), Expect = 5e-35
Identities = 221/288 (77%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 1192 ATGAACGCGTTATCTCGGATGTTAGATGCTAAATTGGCCACGCAGTACAAAAAGATAATG 1251
||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1 ATGAACGAGTTATCTCGGATGTTAGATGCTAAATTGAATGCGCAGTACAAAAAGATCATT 60
Query 1252 AAAGGTGTTACTGATTGGTTTATCGCAAACACTTCCATATCAACTAATAATGGGAAAGAT 1311
||||||||| ||||||||||||| |||||||||| || || | | |||||| |||||
Sbjct 61 AAAGGTGTTTCTGATTGGTTTATTGCAAACACTTTGATTTCTGCGGAGAATGGGGAAGAT 120
Query 1312 ATCCCTTCTGAGAATGGGGTAGAAGCTCCTGCTG-GCAATG-GGAAAGATAAAGATGTTC 1369
| ||| | || ||||| ||||| | |||| | | || | |||||| ||| | ||||
Sbjct 121 GTTCCTCCGGAAAATGGTAAAGAAGTTTCTGCGGAG-AA-GAGGAAAGGGAAAAAGGTTC 178
Query 1370 CTCTGACCC-GTAATAATCCGTTTCC-CAACTCAGATGGAGACGATGATTTTGAAATTGT 1427
|| | ||| || ||| || | ||| || || |||||||| ||||||||||| | | |
Sbjct 179 CTGTTCCCCAGTC-TAAACC-TCTCCACATTTCCGATGGAGATGATGATTTTGACACTCT 236
Query 1428 CC--CCCCTCTTCGTTCGCAGACCCGTCGTTCTACACGCCTTGGCAAA 1473
| |||||| ||| ||| || |||||| || | ||| ||||||||
Sbjct 237 CTTTCCCCTC--CGTCCGCCGAGTCGTCGTCCTTCTCGCATTGGCAAA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109166642170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5