BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04408.1
Length=342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947103 jgi|Araly1|947103|scaffold_703332.1 351 1e-96
Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017 339 1e-92
Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031 333 5e-91
Ahg947092 jgi|Araly1|947092|scaffold_703321.1 329 6e-90
Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020 326 8e-89
Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022 311 2e-84
Ahg485860 jgi|Araly1|485860|fgenesh2_kg.5__1852__AT3G54560.1 311 2e-84
Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018 169 1e-41
> Ahg947103 jgi|Araly1|947103|scaffold_703332.1
Length=568
Score = 351 bits (190), Expect = 1e-96
Identities = 253/284 (89%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120
|||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||| |||
Sbjct 282 TTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTT 341
Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180
||||| |||| || |||||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 342 GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 401
Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240
||||||| | |||| | | ||| ||| | ||||||||||||||||||||| ||||||||
Sbjct 402 GAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATTTG 461
Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300
||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 462 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTGGA 521
Query 301 GGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 342
||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 522 GGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 565
> Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017
Length=267
Score = 339 bits (183), Expect = 1e-92
Identities = 239/267 (90%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120
|||||| ||| ||||||||||| |||||| ||||||| ||||||| ||||||||| |||
Sbjct 1 TTTCCACTGGGTCGTATTCACAGGCAACTCAAGACCAAAGTTTCTCCACATGGTAGAGTT 60
Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180
||||| |||| || |||||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 61 GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 120
Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240
| ||||| | |||| | | ||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 121 GACTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCAAGACATTTG 180
Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA 240
Query 301 GGAGGTGTGATCCCTCACATCCACTAG 327
|||||||||||||||||||||||||||
Sbjct 241 GGAGGTGTGATCCCTCACATCCACTAG 267
> Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031
Length=267
Score = 333 bits (180), Expect = 5e-91
Identities = 239/268 (89%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120
|||||||||| ||||||||||| |||| | ||||||| ||||||||||||||||| |||
Sbjct 1 TTTCCAGTGGGTCGTATTCACAGGCAAGTCAAGACCATAGTTTCTGCACATGGTAGAGTT 60
Query 121 GGTGCGACTGA-TGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCT 179
||||| ||| | || |||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 61 GGTGCCACT-ACTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCT 119
Query 180 TCAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTT 239
| ||||||| | |||| | | ||| ||| ||||| |||||||||||||||||||||||||
Sbjct 120 TGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAACTGAAGAGGATAACTCCAAGGCATTT 179
Query 240 GCAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGG 299
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 GCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGG 239
Query 300 AGGAGGTGTGATCCCTCACATCCACTAG 327
|||||||||||||||||||| ||| |||
Sbjct 240 AGGAGGTGTGATCCCTCACACCCAGTAG 267
> Ahg947092 jgi|Araly1|947092|scaffold_703321.1
Length=553
Score = 329 bits (178), Expect = 6e-90
Identities = 250/284 (88%), Gaps = 8/284 (3%)
Strand=Plus/Plus
Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120
|||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||| |||
Sbjct 273 TTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTT 332
Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180
||||| | || || |||||||||| ||||||||||||||| ||| | | ||||||||
Sbjct 333 GGTGCCAATGCTGATGTCTACACGGCTTCAATCCTTGAATACCT-A--A---AGGTTCTT 386
Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240
||||||| | |||| | | ||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 387 GAGTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCATGGCATTTG 446
Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 447 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA 506
Query 301 GGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 342
||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 507 GGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 550
> Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020
Length=297
Score = 326 bits (176), Expect = 8e-89
Identities = 236/266 (89%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120
|||||||||| ||||||||| | |||||| |||||||||||||||||| |||||| |||
Sbjct 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90
Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180
||||| ||| || |||||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150
Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240
||||||| | ||| | | ||| ||| || |||||||||||||||||||||||||||||
Sbjct 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210
Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300
||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270
Query 301 GGAGGTGTGATCCCTCACATCCACTA 326
| ||||||||||||||||||||||||
Sbjct 271 GTAGGTGTGATCCCTCACATCCACTA 296
> Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022
Length=402
Score = 311 bits (168), Expect = 2e-84
Identities = 216/240 (90%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 87 ACTTAAGACCAGAGTTTCTGCACATGGTACTGTTGGTGCGACTGATGTTGTCTACACGAC 146
||| ||||||||||||||||||||||||| ||| |||| |||| || |||||||||| |
Sbjct 162 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTCGTGCCACTGCTGATGTCTACACGGC 221
Query 147 TTCAATCCTTGAATGCCTAACTACTGAGGTTCTTCAGTTGGCCGAAAACACTAACAAGGA 206
|||||||||||||| | ||||||| |||||||| ||||||| | |||||| | ||| ||
Sbjct 222 TTCAATCCTTGAATACATAACTACAAAGGTTCTTGAGTTGGCTGGAAACACGAGCAAAGA 281
Query 207 TTTGAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGGTTAGAGGAGATGAGGA 266
| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 282 TCTGGAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGA 341
Query 267 GCTTGACACACTCATCAAAGGAACAATTGTTGGAGGAGGTGTGATCCCTCACATCCACTA 326
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 342 GCTTGACACACTCATCAAAGGAACAATTGCTGGAGTAGGTGTGATCCCTCACATCCACTA 401
> Ahg485860 jgi|Araly1|485860|fgenesh2_kg.5__1852__AT3G54560.1
Length=671
Score = 311 bits (168), Expect = 2e-84
Identities = 249/289 (86%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 56 TTCAGTTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTA 115
|||||||||| |||| ||||||||||| |||||| |||||||||||||| ||||| || |
Sbjct 205 TTCAGTTTCCTGTGGGTCGTATTCACAGGCAACTCAAGACCAGAGTTTCCGCACACGGCA 264
Query 116 CTGTTGGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGG 175
|||||||| |||| || ||| |||||| | |||||||| || | |||||| |||| |
Sbjct 265 GAGTTGGTGCAACTGCTGCTGTTTACACGGCATCAATCCTGGAGTATCTAACTGCTGAAG 324
Query 176 TTCTTCAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGC 235
||||| ||||||| | |||| ||| |||||||||||||||||||||||| ||||| ||||
Sbjct 325 TTCTTGAGTTGGCTGGAAACGCTAGCAAGGATTTGAAAGTGAAGAGGATCACTCCGAGGC 384
Query 236 ATTTGCAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTG 295
|| |||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 385 ATCTGCAGTTGGCTATCAGAGGAGATGAGGAGCTTGACACACTCATCAAGGGAACGATTG 444
Query 296 TTGGAGGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 342
||||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 445 CCGGAGGAGGTGTGATCCCACACATCCACAAGTCTCTGATCAACAAAAC 493
> Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018
Length=333
Score = 169 bits (91), Expect = 1e-41
Identities = 134/155 (86%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 87 ACTTAAGACCAGAGTTTCTGCACATGGTACTGTTGGTGCGACTGATGTTGTCTACACGAC 146
||| ||||||||||||||||||||||||| |||| ||| |||| || |||||||||| |
Sbjct 177 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTGATGCCACTGCTGATGTCTACACGGC 236
Query 147 TTCAATCCTTGAATGCCTAACTACTGAGGTTCTTCAGTTGGC-CGAAAACACTAACAAGG 205
|||||||||||||| ||||||||| |||||||| ||||||| ||| | | | ||| |
Sbjct 237 TTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAGA-GCGAGCAAAG 295
Query 206 ATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240
|| ||||||||||||||||||||||||||||||||
Sbjct 296 ATCTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12133477302
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5