BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04408.1 Length=342 Score E Sequences producing significant alignments: (Bits) Value Ahg947103 jgi|Araly1|947103|scaffold_703332.1 351 1e-96 Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017 339 1e-92 Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031 333 5e-91 Ahg947092 jgi|Araly1|947092|scaffold_703321.1 329 6e-90 Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020 326 8e-89 Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022 311 2e-84 Ahg485860 jgi|Araly1|485860|fgenesh2_kg.5__1852__AT3G54560.1 311 2e-84 Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018 169 1e-41 > Ahg947103 jgi|Araly1|947103|scaffold_703332.1 Length=568 Score = 351 bits (190), Expect = 1e-96 Identities = 253/284 (89%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 |||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||| ||| Sbjct 282 TTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTT 341 Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180 ||||| |||| || |||||||||| ||||||||||||||| ||||||||| |||||||| Sbjct 342 GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 401 Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240 ||||||| | |||| | | ||| ||| | ||||||||||||||||||||| |||||||| Sbjct 402 GAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATTTG 461 Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300 ||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 462 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTGGA 521 Query 301 GGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 342 ||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 522 GGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 565 > Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017 Length=267 Score = 339 bits (183), Expect = 1e-92 Identities = 239/267 (90%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 |||||| ||| ||||||||||| |||||| ||||||| ||||||| ||||||||| ||| Sbjct 1 TTTCCACTGGGTCGTATTCACAGGCAACTCAAGACCAAAGTTTCTCCACATGGTAGAGTT 60 Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180 ||||| |||| || |||||||||| ||||||||||||||| ||||||||| |||||||| Sbjct 61 GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 120 Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240 | ||||| | |||| | | ||| ||| ||||||||||||||||||||||||| |||||| Sbjct 121 GACTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCAAGACATTTG 180 Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA 240 Query 301 GGAGGTGTGATCCCTCACATCCACTAG 327 ||||||||||||||||||||||||||| Sbjct 241 GGAGGTGTGATCCCTCACATCCACTAG 267 > Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031 Length=267 Score = 333 bits (180), Expect = 5e-91 Identities = 239/268 (89%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 |||||||||| ||||||||||| |||| | ||||||| ||||||||||||||||| ||| Sbjct 1 TTTCCAGTGGGTCGTATTCACAGGCAAGTCAAGACCATAGTTTCTGCACATGGTAGAGTT 60 Query 121 GGTGCGACTGA-TGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCT 179 ||||| ||| | || |||||||||| ||||||||||||||| ||||||||| ||||||| Sbjct 61 GGTGCCACT-ACTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCT 119 Query 180 TCAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTT 239 | ||||||| | |||| | | ||| ||| ||||| ||||||||||||||||||||||||| Sbjct 120 TGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAACTGAAGAGGATAACTCCAAGGCATTT 179 Query 240 GCAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGG 299 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 180 GCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGG 239 Query 300 AGGAGGTGTGATCCCTCACATCCACTAG 327 |||||||||||||||||||| ||| ||| Sbjct 240 AGGAGGTGTGATCCCTCACACCCAGTAG 267 > Ahg947092 jgi|Araly1|947092|scaffold_703321.1 Length=553 Score = 329 bits (178), Expect = 6e-90 Identities = 250/284 (88%), Gaps = 8/284 (3%) Strand=Plus/Plus Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 |||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||| ||| Sbjct 273 TTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAGTT 332 Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180 ||||| | || || |||||||||| ||||||||||||||| ||| | | |||||||| Sbjct 333 GGTGCCAATGCTGATGTCTACACGGCTTCAATCCTTGAATACCT-A--A---AGGTTCTT 386 Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240 ||||||| | |||| | | ||| ||| ||||||||||||||||||||||| |||||||| Sbjct 387 GAGTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCATGGCATTTG 446 Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 447 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA 506 Query 301 GGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 342 ||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 507 GGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 550 > Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020 Length=297 Score = 326 bits (176), Expect = 8e-89 Identities = 236/266 (89%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 61 TTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTACTGTT 120 |||||||||| ||||||||| | |||||| |||||||||||||||||| |||||| ||| Sbjct 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90 Query 121 GGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGGTTCTT 180 ||||| ||| || |||||||||| ||||||||||||||| ||||||||| |||||||| Sbjct 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150 Query 181 CAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240 ||||||| | ||| | | ||| ||| || ||||||||||||||||||||||||||||| Sbjct 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210 Query 241 CAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGTTGGA 300 ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270 Query 301 GGAGGTGTGATCCCTCACATCCACTA 326 | |||||||||||||||||||||||| Sbjct 271 GTAGGTGTGATCCCTCACATCCACTA 296 > Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022 Length=402 Score = 311 bits (168), Expect = 2e-84 Identities = 216/240 (90%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 87 ACTTAAGACCAGAGTTTCTGCACATGGTACTGTTGGTGCGACTGATGTTGTCTACACGAC 146 ||| ||||||||||||||||||||||||| ||| |||| |||| || |||||||||| | Sbjct 162 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTCGTGCCACTGCTGATGTCTACACGGC 221 Query 147 TTCAATCCTTGAATGCCTAACTACTGAGGTTCTTCAGTTGGCCGAAAACACTAACAAGGA 206 |||||||||||||| | ||||||| |||||||| ||||||| | |||||| | ||| || Sbjct 222 TTCAATCCTTGAATACATAACTACAAAGGTTCTTGAGTTGGCTGGAAACACGAGCAAAGA 281 Query 207 TTTGAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGGTTAGAGGAGATGAGGA 266 | || |||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 282 TCTGGAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGA 341 Query 267 GCTTGACACACTCATCAAAGGAACAATTGTTGGAGGAGGTGTGATCCCTCACATCCACTA 326 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 342 GCTTGACACACTCATCAAAGGAACAATTGCTGGAGTAGGTGTGATCCCTCACATCCACTA 401 > Ahg485860 jgi|Araly1|485860|fgenesh2_kg.5__1852__AT3G54560.1 Length=671 Score = 311 bits (168), Expect = 2e-84 Identities = 249/289 (86%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 56 TTCAGTTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGTTTCTGCACATGGTA 115 |||||||||| |||| ||||||||||| |||||| |||||||||||||| ||||| || | Sbjct 205 TTCAGTTTCCTGTGGGTCGTATTCACAGGCAACTCAAGACCAGAGTTTCCGCACACGGCA 264 Query 116 CTGTTGGTGCGACTGATGTTGTCTACACGACTTCAATCCTTGAATGCCTAACTACTGAGG 175 |||||||| |||| || ||| |||||| | |||||||| || | |||||| |||| | Sbjct 265 GAGTTGGTGCAACTGCTGCTGTTTACACGGCATCAATCCTGGAGTATCTAACTGCTGAAG 324 Query 176 TTCTTCAGTTGGCCGAAAACACTAACAAGGATTTGAAAGTGAAGAGGATAACTCCAAGGC 235 ||||| ||||||| | |||| ||| |||||||||||||||||||||||| ||||| |||| Sbjct 325 TTCTTGAGTTGGCTGGAAACGCTAGCAAGGATTTGAAAGTGAAGAGGATCACTCCGAGGC 384 Query 236 ATTTGCAGTTGGCGGTTAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTG 295 || |||||||||| | |||||||||||||||||||||||||||||||| ||||| |||| Sbjct 385 ATCTGCAGTTGGCTATCAGAGGAGATGAGGAGCTTGACACACTCATCAAGGGAACGATTG 444 Query 296 TTGGAGGAGGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 342 ||||||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 445 CCGGAGGAGGTGTGATCCCACACATCCACAAGTCTCTGATCAACAAAAC 493 > Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018 Length=333 Score = 169 bits (91), Expect = 1e-41 Identities = 134/155 (86%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 87 ACTTAAGACCAGAGTTTCTGCACATGGTACTGTTGGTGCGACTGATGTTGTCTACACGAC 146 ||| ||||||||||||||||||||||||| |||| ||| |||| || |||||||||| | Sbjct 177 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTGATGCCACTGCTGATGTCTACACGGC 236 Query 147 TTCAATCCTTGAATGCCTAACTACTGAGGTTCTTCAGTTGGC-CGAAAACACTAACAAGG 205 |||||||||||||| ||||||||| |||||||| ||||||| ||| | | | ||| | Sbjct 237 TTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAGA-GCGAGCAAAG 295 Query 206 ATTTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 240 || |||||||||||||||||||||||||||||||| Sbjct 296 ATCTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12133477302 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5