BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04450.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616 2423 0.0
Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638 651 0.0
> Ahg327396 jgi|Araly1|327396|fgenesh1_pm.C_scaffold_6002616
Length=1590
Score = 2423 bits (1312), Expect = 0.0
Identities = 1501/1593 (94%), Gaps = 9/1593 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCGTTTTCCGGTAAGTCTTGGAGGAGGTCCACGTGAGAAT-CTGAAGCCATCAGA 59
||||||||||||||||||||||||||||||||||||||||| ||| | |||||| | ||
Sbjct 1 ATGTTTCGTTTTCCGGTAAGTCTTGGAGGAGGTCCACGTGACAATAC-GAAGCCGTTGGA 59
Query 60 TGAGCAGCATCAACGTGCGGTGGTGAATGAGGTTGACTTTTTCCGATCAGCGGAGAAGAG 119
|||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 60 TGAGCAGCATCATCGGGCGGTGGTGGATGAGGTTGACTTTTTCCGATCGGCGGAGAAGAG 119
Query 120 AGATAGGGTTTCACGTGAAGAACAAAACATTATCGCCG---ATGAGACTCATAGGGTTCA 176
|||||||||||||||||| || ||| | || ||||||| |||||||||||||||||||
Sbjct 120 AGATAGGGTTTCACGTGATGATCAAGATATGATCGCCGATCATGAGACTCATAGGGTTCA 179
Query 177 TGTCAAAAGGGAGAATTCACGTGTTGATGATCATGACGATCGTTCTACTGATCACATCAA 236
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 180 TGTCAAAAGGGAGAATTCACGTGTTGATGATCATGAAGATCGTTCTACGGATCATATCAA 239
Query 237 TATTGGACTTAATCTTCTCACTGCGAATACGGGAAGCGACGAGTCAATGGTGGATGATGG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATTGGACTTAATCTTCTCACTGCGAATACGGGAAGCGACGAGTCAATGGTGGATGATGG 299
Query 297 ATTGTCTGTGGATATGGAAGAGAAACGTACAAAGTGTGAGAATGCACAACTTCGCGAAGA 356
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 300 ATTGTCTGTGGATATGGAAGAGAAACGTACAAAGTGTGAGAATGCGCAACTTCGAGAAGA 359
Query 357 GCTAAAGAAGGCGAGTGAAGATAATCAAAGACTAAA-GCAAATGCTAAGTCAAACAACCA 415
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 360 GCTAAAGAAGGCGAGTGAAGATAATCAAAGACTAAAAG-AAATGCTAAGTCAAACAACCA 418
Query 416 ACAACTTCAATTCCTTGCAGATGCAACTTGTTGCTGTCATGAGGCAACAAGAAGATCATC 475
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 ACAGCTTCAATTCCTTGCAGATGCAACTTGTTACTGTCATGAGGCAACAAGAAGATCATC 478
Query 476 ATCACCTAGCTACGACCGAGAACAATGACAATGTAAAGAACCGACATGAAGTGCCTGAAA 535
||||||| ||||| || || ||||| ||||| | | |||||||||||||||||||||||
Sbjct 479 ATCACCTGGCTACAACTGAAAACAAAGACAACGCCACGAACCGACATGAAGTGCCTGAAA 538
Query 536 TGGTTCC-AAGACAGTTCATCGATTTGGGACCGCATTCTGACGAAGTGTCGTCCGAGGAG 594
||||||| || |||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 539 TGGTTCCGAA-ACAGTTCATCGATTTGGGACCGCAGTCAGATGAAGTGTCATCCGAGGAG 597
Query 595 AGGACGACGGTTCGGTCGGGATCTCCTCCCTCGCTTCTAGAGAAATCTAGCTCACGTCAA 654
||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 598 AGGACGACGGTTCGGTCAGGATCTCCTCCATCGCTTCTAGAGAAATCTAGCTTACGTCAA 657
Query 655 AACGGAAAGAGAGTGCTTGTAAGAGAAGAAAGCCCGGAAACCGAATCCAACGGCTGGAGA 714
|||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 658 AACGGAAAGAGACTGCTTGTAAGAGAAGAAAGCCCAGAAACCGAATCCAACAGCTGGAGA 717
Query 715 AACCCTAACAAAGTTCCTAAACACCATGCATCATCCAGCATTTGCGGTGGCAATGGCAGT 774
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 718 AACCCTAACAAAGTTCCTAAACACCACGCATCCTCCAGCAATTGCGGTGGCAATGGCAGT 777
Query 775 GAAAATGCAAGTAGCAAGGTCATTGAGCAAGCGGCCGCCGAAGCCACCATGCGTAAAGCC 834
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 778 GAAAATGCAAGTAGCAAGGTCATCGAGCAAGCGGCTGCGGAAGCCACCATGCGTAAAGCC 837
Query 835 CGTGTCTCGGTTCGTGCTCGATCCGAAGCTCCCATGTTAAGCGATGGATGTCAATGGAGA 894
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 838 CGTGTTTCGGTTCGTGCTCGATCCGAAGCTAACATGCTAAGCGATGGATGTCAATGGAGA 897
Query 895 AAATACGGACAAAAAATGGCGAAAGGAAACCCGTGCCCTCGAGCTTATTACCGTTGCACA 954
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAATACGGGCAGAAAATGGCGAAAGGAAACCCGTGCCCTCGAGCTTATTACCGTTGCACA 957
Query 955 ATGGCTGTTGGATGTCCTGTTCGCAAGCAAGTGCAACGTTGCGCGGAAGATAGAACCATT 1014
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 ATGGCCGTTGGATGCCCCGTTCGCAAGCAAGTGCAACGTTGCGCGGAAGACAGAACCATT 1017
Query 1015 CTCATAACAACCTACGAAGGAAACCATAACCATCCATTACCTCCTGCGGCTATGAACATG 1074
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 CTCATAACAACCTACGAAGGAAACCATAACCATCCATTACCTCCCGCGGCTATGAACATG 1077
Query 1075 GCTTCAACTACAACAGCAGCCGCAAGCATGCTTCTCTCAGGCTCCACCATGTCGAACCAA 1134
|||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1078 GCTTCAACCACAACCGCAGCCGCAAGCATGCTCCTCTCAGGCTCCACAATGTCGAACCAA 1137
Query 1135 GACGGTTTAATGAACCCAACAAATCTCTTGGCTCGAACCATATTACCGTGTTCCTCAAGC 1194
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1138 GATGGTTTAATGAACCCAACAAATCTCTTGGCCCGAACCATCTTACCGTGTTCCTCAAGC 1197
Query 1195 ATGGCTACTATCTCAGCCTCTGCACCATTCCCAACCATTACATTAGACCTCACAGAGTCA 1254
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 ATGGCCACTATCTCAGCCTCTGCACCATTCCCAACCATTACATTAGACCTCACAGACTCA 1257
Query 1255 CCCAACGGGAACAATCCAACCAATAACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTG 1314
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TCCAACGGTAACAATCCAACTAATAACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTC 1317
Query 1315 GTGGAGTTGAACCAATCGGTTTTGCCTCATATGATGGGTCAGGCTTTGTACTACAACCAA 1374
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GCGGAGTTGAATCAATCGGTTTTGCCTCATATGATGGGTCAGGCTTTGTACTACAACCAA 1377
Query 1375 CAGTCTAAGTTTTCGGGTTTACATATGCCGTCTCAGCCGCTAAACGCTGGTGAGAGTGTT 1434
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1378 CAGTCTAAGTTCTCGGGTTTACATATGCCGTCTCAGCCTCTAAACGCTGGCGAGAGCGTT 1437
Query 1435 AGCGCCGCTACTGCCGCAATCGCCTCCAATCCCAACTTTGCCGCGGCTCTAGCTGCAGCC 1494
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1438 AGCGCCGCTACTGCCGCCATCGCCTCCAACCCCAACTTTGCAGCGGCTCTAGCTGCAGCC 1497
Query 1495 ATAACTTCGATTATCAACGGTTCGAACAATCAGCAGAATGGGAACAACAATAACAGTAAT 1554
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1498 ATAACTTCTATTATCAACGGTTCGAATACTCAGCAGAATGGGAACAACAATAACAGTAAT 1557
Query 1555 GTTACAACGAGCAACGTTGACAATAGGCAATAA 1587
|| || |||||||||||||||||||||||||||
Sbjct 1558 GTCACCACGAGCAACGTTGACAATAGGCAATAA 1590
> Ahg329411 jgi|Araly1|329411|fgenesh1_pm.C_scaffold_7001638
Length=1617
Score = 651 bits (352), Expect = 0.0
Identities = 831/1052 (79%), Gaps = 74/1052 (7%)
Strand=Plus/Plus
Query 576 CGAAGTGTCGTCCGAGGAGAGGACGACGGTTCGGTCGGGATCTCCTCCCTCGCTTCTAGA 635
|||||| || || || |||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 600 CGAAGTATCATCTGAAGAGAGGACAACGGTTCGTTCGGGTTCTCCTCCTTCGCTTCTAGA 659
Query 636 GAA-AT-CTAGCTCACGTCAAAACGGAAAGAGAG-TGCTTGTAAGAGAAGAAAGC-C--C 689
|| | | | | | || | ||||||||||| | |||||| ||||||||||||| |
Sbjct 660 -AAGTTCCAATC-CCCGAGAGAACGGAAAGAG-GTTGCTTGGAAGAGAAGAAAGCTCAGA 716
Query 690 GGAAACCGAATCCAACGGCTGGAGAAACCCTAACAAAGTTCCTAAACACCATGCATCATC 749
|||| |||| || |||| |||| |||||||||||||||| || ||||| || |||| ||
Sbjct 717 GGAATCCGAGTCTAACGCCTGGGGAAACCCTAACAAAGTCCCCAAACATAATCCATCCTC 776
Query 750 CAGCATTTGCGGTGGCAATGGCAGTGAAAATGCAAGTAGCAAGGTCATTGAGCAAG-CGG 808
|||| | ||||||| | || | | || | || || ||||| | || |||
Sbjct 777 TAGCA---AC---AGCAATGG-A---AACA-G-AAACGGAAATGTTATTGATC-AGTCGG 823
Query 809 CCGCCGAAGCCACCATGCGTAAAGCCCGTGTCTCGGTTCGTGCTCGATCCGAAGCTCCCA 868
|||| |||||||||||||| |||||||||||||| |||||||| ||||| |||||| | |
Sbjct 824 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCGA 883
Query 869 TGTTAAGCGATGGATGTCAATGGAGAAAATACGGACAAAAAATGGCGAAAGGAAACCCGT 928
|| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 884 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 943
Query 929 GCCCTCGAGCTTATTACCGTTGCACAATGGCTGTTGGATGTCCTGTTCGCAAGCAAGTGC 988
| || ||||||||||| || ||||||||||| | ||||||||||||||||||||||||||
Sbjct 944 GTCCGCGAGCTTATTATCGCTGCACAATGGCCGGTGGATGTCCTGTTCGCAAGCAAGTGC 1003
Query 989 AACGTTGCGCGGAAGATAGAACCATTCTCATAACAACCTACGAAGGAAACCATAACCATC 1048
|||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| |||||||
Sbjct 1004 AACGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCATC 1063
Query 1049 CATTACCTCCTGCGGCTATGAACATGGCTTCAACTACAACAGCAGCCGCAAGCATGCTTC 1108
|| | || || || |||||| |||||| ||||| || || ||||||||||||||||| |
Sbjct 1064 CACTCCCACCAGCCGCTATGGCCATGGCCTCAACAACCACCGCAGCCGCAAGCATGCTCC 1123
Query 1109 TCTCAGGCTCCACCATGTCGAACCAAGACGGTTTAATGAACCCAACAAATCTCTTGGCTC 1168
|||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct 1124 TCTCGGGCTC-A--ATGTCGAGCCAAGACGGTTTAATGAACCCAACAAACCTCTTAGCTC 1180
Query 1169 GAACCATATTACCGTGTTCCTCAAGCATGGCTACTATCTCAGCCTCTGCACCATTCCCAA 1228
|| |||| || || || |||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1181 GAGCCATCTTGCCTTGCTCCTCAAGCATGGCCACAATCTCAGCCTCCGCACCATTCCCAA 1240
Query 1229 CCATTACATTAGACCTCAC-AGAGTCACCCAACGGGAACAATCC-AA-----CCA--A-T 1278
|||| ||||| |||||||| | | ||||||||||| ||||| || || ||| | |
Sbjct 1241 CCATCACATTGGACCTCACCA-ATTCACCCAACGGCAACAACCCTAATATGACCACTAAT 1299
Query 1279 AACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTGGTGGAGTTGAACCAATCGGTTTTG 1338
|||||| ||||||| ||| |||||||| ||||||| | | || ||||||||
Sbjct 1300 AACCCGTTGATGCAGTTCGCTCAACGGCCTGGTTTC----A----ACCCGG-CGGTTTTG 1350
Query 1339 CCTCATA-TGATGGGTCAGGCTTTGTACTACAACCAACA---GTCTAAGTTTTCGGGTTT 1394
||||| | || | || || || ||| || |||||||| ||| |||||||| |||||
Sbjct 1351 CCTCA-AGTGGTCGGCCAAACTATGTTTTATAACCAACAACAGTCCAAGTTTTCTGGTTT 1409
Query 1395 ACA-TATGCCGTCTCAGCCGCTA-A-A-C--G-C---T-----GGTG----AGAGTGTTA 1435
||| | | ||| ||||||| || | | | | | | |||| |||| || |
Sbjct 1410 ACAGT-TACCGGCTCAGCCACTGCAGATCCCGACCACTTCCTCGGTGGCCGAGAGCGTCA 1468
Query 1436 GCGCCGCTACTGCCGCAATCGCCTCCAATCCCAACTTTGCCGCGGCTCTAGCTGCAGCCA 1495
| || || | ||| || || || ||| |||| |||||||| ||||||||||| ||||| |
Sbjct 1469 GTGCTGCCAGTGCAGCGATTGCGTCCGATCCAAACTTTGCGGCGGCTCTAGCGGCAGCAA 1528
Query 1496 TAACTTCGATTATCAACGGTTCGAACAATCAGCAGAATGGGAACAACAATAACAGTAATG 1555
| || || ||||| |||||||| || ||| |||||| |||| ||||| | |||||
Sbjct 1529 TTACCTCCATTATGAACGGTTC---CAGTCATCAGAATAATAACACCAATAGTAATAATG 1585
Query 1556 TTACAACGAGCAACGTTGACAATAGGCAATAA 1587
| | || ||||||| ||||| ||||||||||
Sbjct 1586 TGGCTACAAGCAACGGTGACACTAGGCAATAA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5