BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04460.1
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490093 jgi|Araly1|490093|fgenesh2_kg.6__3227__AT4G04460.1 2712 0.0
Ahg945906 jgi|Araly1|945906|scaffold_702135.1 106 6e-22
Ahg943135 jgi|Araly1|943135|scaffold_603679.1 80.5 4e-14
Ahg926389 jgi|Araly1|926389|scaffold_201950.1 80.5 4e-14
> Ahg490093 jgi|Araly1|490093|fgenesh2_kg.6__3227__AT4G04460.1
Length=1705
Score = 2712 bits (1468), Expect = 0.0
Identities = 1634/1714 (95%), Gaps = 11/1714 (1%)
Strand=Plus/Plus
Query 1 ATTCTTCTTCGTCTTGTTAAGCTTTTAAGAATCTCTACTCACATTTTCTCTGTAAAAATG 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATTCTTCTTCGTCTTGTTAAGCTTATAAGAATCTCTACTCACATTTTCTCTGTAAAAATG 60
Query 61 GGAACTAGGTTCCAATCATTCTTGCTCGTGTTCTTGCTTTCATGTTTAATCCTCATATCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAACTAGGTTCCAATCATTCTTGCTCGTGTTCTTGCTTTCATGTTTAATCCTCATATCC 120
Query 121 ACTGCCTCGTGTGAGC-GAAATGGTGATGGAACGATTAGAATTGGATTGAAGAAGAGGAA 179
||||||| |||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 121 ACTGCCTTGTGTGAGCGGAAA-GGTGATGGGACGATTAGAATTGGATTGAAGAAGAGGAA 179
Query 180 ACTAGACCGGAGCAACAGGCTAGCTTCTCAGCtttttttGAAAAACCGAGGGTCTCATTG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 ACTAGACCGGAGCAACAGGCTAGCTTCTCAGCTTTTTTTGAAAAACCGAGGG--TC-TTG 236
Query 240 GTCTCCCAAACACTATTTTCGCCTGAACGATGAAAATGCGGATATGGTTCCGCTGAAAAA 299
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 237 GTCTCCCAAAGACTATTTTCGCCTGAACGATGCAAATGCGGATATGGTTCCGCTGAAAAA 296
Query 300 CTATTTGGATGCTCAATACTATGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCAC 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 TTATTTGGATGCTCAATACTATGGTGACATTACCATTGGTACTCCACCTCAGAAGTTCAC 356
Query 360 TGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 357 TGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACTTATC 416
Query 420 GGTTGCTTGTTATTTCCACTCCAAGTACAAGGCTAGCCAGTCATCGTCATATAGAAAGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 GGTTGCTTGTTATTTCCACTCCAAGTACAAGGCTAGCCAGTCATCGTCATACAGAAAGAA 476
Query 480 CGGAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGA 539
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 CGGGAAACCCGCGTCAATCCGCTATGGGACAGGTGCTATTTCTGGTTACTTTAGCAATGA 536
Query 540 TGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGGAATTCATAGAGGCTACTAGTGA 599
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 537 TGATGTTAAAGTTGGTGATATCGTTGTCAAGGAGCAGGAATTCATAGAGGCTACTACTGA 596
Query 600 GCCTGGTATAACATTCTTGCTAGCAAAGTTTGATGGTATCCTCGGTTTGGGTTTCAAAGA 659
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCCTGGTATAACCTTCTTGCTGGCAAAGTTTGATGGTATCCTCGGTTTGGGTTTCAAAGA 656
Query 660 GATTTCTGTAGGAAACTCAACTCCGGTTTGGTATAACATGGTAGAAAAAGGTTTAGTTAA 719
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 GATTTCTGTCGGAAATTCAACTCCGGTTTGGTATAACATGGTAGAAAAAGGTTTGGTTAA 716
Query 720 GGAACCGA-TTTTTTCGTTCTGGCTTAACCGTAACCCGAAAGATCCAGAAGGCGGTGAGA 778
|| ||| | | ||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 717 GG-ACCCAGTCTTTTCGTTCTGGCTTAACCGTAACCCGCAAGATCAAGAAGGTGGTGAGA 775
Query 779 TTGTTTTCGGTGGAGTCGACCCGAAGCACTTCAAAGGAGAGCATACTTTTGTTCCTGTGA 838
||||||| || ||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 776 TTGTTTTTGGCGGAGTCGACCCAAAACACTTCAAAGGAGAGCATACTTATGTTCCTGTGA 835
Query 839 CACATAAAGGTTACTGGCAGTTTGACATGGGTGATCTCCAAATTGCTGGCAAACCAACCG 898
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 836 CACATAAAGGTTACTGGCAGTTTGACATGGGTGATGTCCAAATTGCTGGCAAACCTACAG 895
Query 899 GATATTGTGCTAAAGGTTGTTCTGCTATTGCTGATTCCGGAACTTCTCTGCTCACCGGTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GATATTGTGCTAAAGGTTGTTCTGCTATTGCTGATTCCGGAACTTCTCTGCTCACCGGTC 955
Query 959 CATCGACTGTCATCACGATGATCAATCACGCGATAGGAGCACAAGGAATTGTAAGCCGTG 1018
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 956 CATCGACTGTCATCACGATGATCAATCATGCGATAGGAGCACAAGGAATCGTAAGCCGTG 1015
Query 1019 AATGCAAGGCCGTGGTGGATCAATACGGAAAAACCATGTTGAATTCTCTTCTAGCTCAGG 1078
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1016 AATGCAAGGCTGTGGTGGATCAGTACGGAAAAACAATGTTGAATTCTCTTCTAGCTCAGG 1075
Query 1079 AGGATCCGAAGAAAGTATGCTCACAAATTGGAGTCTGCGCTTATGATGGTACACAGAGTG 1138
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 AGGATCCGAAGAAGGTATGCTCACAAATTGGAGTCTGCGCTTATGATGGTACACACAGTG 1135
Query 1139 TGAGTATGGGGATCCAGTCAGTTGTAGACGATGGAACATCGGGTCTTTTAAACCAAGCGA 1198
||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1136 TGAGTATGGACATCCAGTCAGTTGTAGATGATGAAACATCGGGTCTTTTAAACCAAGCGA 1195
Query 1199 TGTGCAGTGCTTGCGAAATGGCAGCCGTGTGGATGGAGAGCGAATTGACTCAGAATCAAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGTGCAGTGCTTGCGAAATGGCAGCCGTGTGGATGGAGAGCGAATTGACTCAGAATCAAA 1255
Query 1259 CACAAGAACGCATACTCGCTTATGCTGCTGAGCTATGTGACCATATACCAACCCAAAACC 1318
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1256 CACAAGAACGCATACTCGCTTATGCTGCTGAGCTATGTAACCATATACCAACTAAAAACC 1315
Query 1319 AACAATCAGCAGTGGACTGTGGGAGGGTTTCGTCGATGCCTATAGTCACATTCTCAATTG 1378
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1316 AACAATCAGCAGTGGACTGTGAGAGGGTTTCGTCGATGCCTATAGTCTCATTCTCAATTG 1375
Query 1379 GTGGCAGAAGCTTTGATCTAACTCCTCAAGACTATATATTCAAGATCGGGGAAGGAGTTG 1438
| ||||||| ||||||||| |||||||||| |||||||||||||| ||||| |||||||
Sbjct 1376 GCGGCAGAACCTTTGATCTCTCTCCTCAAGATTATATATTCAAGATTGGGGACGGAGTTG 1435
Query 1439 AGTCTCAGTGCACCAGCGGTTTCACGGCAATGGATATTGCTCCGCCTCGTGGACCTCTCT 1498
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1436 AGTCTCAGTGCACTAGCGGTTTCACGGCAATGGATATTCCTCCGCCTCGTGGACCTCTCT 1495
Query 1499 GGATCTTGGGTGATATCTTCATGGGACCATACCACACAGTGTTCGATTATGGGAAAGGAA 1558
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||
Sbjct 1496 GGATCTTGGGTGATATCTTCATGGGACCATATCACACTGTGTTCGATTACGGGAAAGCAA 1555
Query 1559 GAGTTGGATTCGCCAAAGCTGCTTAAACAATATCTCTTCTTTAATACCCTCGTTTTTTAT 1618
|||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| ||
Sbjct 1556 GAGTTGGATTCGCCAAAGCTGCTTAAACAAGACCTCTTCTTTAAGACCCT--TTTTT-AT 1612
Query 1619 ATGATGTTTGTGAATGTGTTTGTAATAACTTAAAACATATTGCTATCCTAGAATGGTATC 1678
|| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1613 ATAATGTTTGTGAATGTGTTTGTAATAACTTAAA-CATATTGCTATTCTAGAATGGTATC 1671
Query 1679 ATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1712
||||||||||||||||||||||||||||||||||
Sbjct 1672 ATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1705
> Ahg945906 jgi|Araly1|945906|scaffold_702135.1
Length=226
Score = 106 bits (57), Expect = 6e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1653 ACATATTGCTATCCTAGAATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1712
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 ACATAATGCTATCCTAGAATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 190
> Ahg943135 jgi|Araly1|943135|scaffold_603679.1
Length=254
Score = 80.5 bits (43), Expect = 4e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1670 AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1712
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 177
> Ahg926389 jgi|Araly1|926389|scaffold_201950.1
Length=254
Score = 80.5 bits (43), Expect = 4e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1670 AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1712
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AATGGTATCATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5