BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04470.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943218 jgi|Araly1|943218|scaffold_603762.1 907 0.0
Ahg490093 jgi|Araly1|490093|fgenesh2_kg.6__3227__AT4G04460.1 320 1e-86
Ahg945906 jgi|Araly1|945906|scaffold_702135.1 159 2e-38
Ahg943135 jgi|Araly1|943135|scaffold_603679.1 159 2e-38
Ahg926389 jgi|Araly1|926389|scaffold_201950.1 159 2e-38
> Ahg943218 jgi|Araly1|943218|scaffold_603762.1
Length=610
Score = 907 bits (491), Expect = 0.0
Identities = 574/614 (93%), Gaps = 6/614 (1%)
Strand=Plus/Plus
Query 35 GAAGAGAAGAATCCaaaaaaaTGGGATCTTCACCACCGAAGAAGACGACTCTGCAACGGT 94
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAAGAGAAGAATCCAAAAAAATGGGATCTT---CACCGAAGAAGACGACTCTGCAACGGT 57
Query 95 ACTTGTCACAGCTTCAACAACATCCTTTAAGAACAAAGGCAATAACTGCTGGAGTTTTGT 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 ACTTGTCACAGCTTCAACAACATCCTTTAAGAACAAAGGCAATAACTGCTGGAGTATTGT 117
Query 155 CTGGTGTTAGCGATGTTGTATCACAGAAGCTCTCTGGCATACAGAAGATTCAGCTGAGAA 214
| ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 118 CCGGTGTCAGCGATGTTGTATCGCAGAAACTATCTGGCATACAGAAGATTCAGCTGAGAA 177
Query 215 GGGTTCTTCTCAAAGTGATATTTGCTGGTGGGTTTCTTGGACCAGCAGGG-CATTTCTTT 273
|||||||||||||| |||||||||| ||||| ||||| |||||||| ||| |||||||||
Sbjct 178 GGGTTCTTCTCAAAATGATATTTGCGGGTGGTTTTCTCGGACCAGC-GGGTCATTTCTTT 236
Query 274 CATACATATTTAGATAAGTTTTTTAAAGGGAAGAAGGATACACAGACTGTTGCAAAGAAG 333
||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 237 CATACATATCTAGATAAGTTTTTTAAAGGGAAGAAGGACACAAAGACTGTGGCAAAGAAG 296
Query 334 GTAATTCTGGAGCAATTGACATTGTCACCATTGAACCATTTGCTTTTCATGATCTATTAT 393
||| || |||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 297 GTAGTTTTGGAACAACTGACATTGTCACCATTGAACCATTTGCTTTTCATGGTCTATTTT 356
Query 394 GGAGTAGTCATAGAAAGAACTCCCTGGACCCTTGTTAGAGAAAGGATCAAGAAGACTTAT 453
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 GGAGTAGTCATCGAAAGAACTCCCTGGAATCTTGTTAGAGAAAGGATCAAGAAGACTTAT 416
Query 454 CCAACGGTCCAGCTTACTGCATGGACGTTTTTCCCGGTGGTGGGATGGATTAACTACAAG 513
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 CCGACGGTCCAGCTTACAGCATGGACGTTTTTCCCGGTGGTGGGATGGATAAACTACAAG 476
Query 514 TATGTGCCACTGCACTTCCGGGTCATCTTGCACAGCCTGGTCGCATTCTTTTGGGGAATT 573
|||||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 477 TATGTGCCTCTCCACTTCCGAGTCATCTTGCACAGCCTTGTCGCGTTCTTTTGGGGAATT 536
Query 574 TTCCTAACCCTGCGAGCGAGGTCAATGACACTAGCTTTGGCAAAGGCTAAGTGATTAGG- 632
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 TTCCTGACCCTGCGAGCGAGGTCAATGACACTGGCTTTGGCAAAGGCTAAGTGATTAGGG 596
Query 633 AAACACATGGATCG 646
|||||||| |||||
Sbjct 597 AAACACATCGATCG 610
> Ahg490093 jgi|Araly1|490093|fgenesh2_kg.6__3227__AT4G04460.1
Length=1705
Score = 320 bits (173), Expect = 1e-86
Identities = 201/214 (94%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 716 AGCTCTGAAACCAAATAAAAATCTGTATTAAGATGATACCATTCTAGGATAGCAATATGT 775
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1705 AGCTCTGAAACCAAATAAAAATCTGTATTAAGATGATACCATTCTAGAATAGCAATATGT 1646
Query 776 TTTAAGTTATTACAAACACATTCACAAACATCATATAAAAAACGAGGGTATTAAAGAAGA 835
|| |||||||||||||||||||||||||||| |||||||||| | || | ||||||||||
Sbjct 1645 TT-AAGTTATTACAAACACATTCACAAACATTATATAAAAAA-G-GG-TCTTAAAGAAGA 1590
Query 836 GATATTGTTTAAGCAGCTTTGGCGAATCCAACTCTTCCTTTCCCATAATCGAACACTGTG 895
| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 1589 GGTCTTGTTTAAGCAGCTTTGGCGAATCCAACTCTTGCTTTCCCGTAATCGAACACAGTG 1530
Query 896 TGGTATGGTCCCATGAAGATATCACCCAAGATCC 929
|| |||||||||||||||||||||||||||||||
Sbjct 1529 TGATATGGTCCCATGAAGATATCACCCAAGATCC 1496
> Ahg945906 jgi|Araly1|945906|scaffold_702135.1
Length=226
Score = 159 bits (86), Expect = 2e-38
Identities = 90/92 (98%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 684 CTTAGTACTCTGTAAGTTAAAGCAAATCAAACAGCTCTGAAACCAAATAAAAATCTGTAT 743
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 222 CTTAGTACTCTGTAAGTTAAAGCAAAACAAACAGCTCTGAAACCAAATAAAAATCTGTAT 163
Query 744 TAAGATGATACCATTCTAGGATAGCAATATGT 775
|||||||||||||||||||||||||| |||||
Sbjct 162 TAAGATGATACCATTCTAGGATAGCATTATGT 131
> Ahg943135 jgi|Araly1|943135|scaffold_603679.1
Length=254
Score = 159 bits (86), Expect = 2e-38
Identities = 111/122 (91%), Gaps = 5/122 (4%)
Strand=Plus/Minus
Query 637 ACATGGATCGTGACAGAGAACTCAAGCCTTGGGACTCATTATGATCACTTAGTACTCTGT 696
|||| ||||||| |||||||| || || | ||||||| |||||| |||||||||||||
Sbjct 251 ACATTGATCGTG--AGAGAACTAAATCCCT-GGACTCAATATGAT--CTTAGTACTCTGT 197
Query 697 AAGTTAAAGCAAATCAAACAGCTCTGAAACCAAATAAAAATCTGTATTAAGATGATACCA 756
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AAGTTAAAGCAAAACAAACAGCTCTGAAACCAAATAAAAATCTGTATTAAGATGATACCA 137
Query 757 TT 758
||
Sbjct 136 TT 135
> Ahg926389 jgi|Araly1|926389|scaffold_201950.1
Length=254
Score = 159 bits (86), Expect = 2e-38
Identities = 111/122 (91%), Gaps = 5/122 (4%)
Strand=Plus/Minus
Query 637 ACATGGATCGTGACAGAGAACTCAAGCCTTGGGACTCATTATGATCACTTAGTACTCTGT 696
|||| ||||||| |||||||| || || | ||||||| |||||| |||||||||||||
Sbjct 251 ACATTGATCGTG--AGAGAACTAAATCCCT-GGACTCAATATGAT--CTTAGTACTCTGT 197
Query 697 AAGTTAAAGCAAATCAAACAGCTCTGAAACCAAATAAAAATCTGTATTAAGATGATACCA 756
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AAGTTAAAGCAAAACAAACAGCTCTGAAACCAAATAAAAATCTGTATTAAGATGATACCA 137
Query 757 TT 758
||
Sbjct 136 TT 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5