BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04480.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490095 jgi|Araly1|490095|fgenesh2_kg.6__3229__AT4G04480.1 1812 0.0
> Ahg490095 jgi|Araly1|490095|fgenesh2_kg.6__3229__AT4G04480.1
Length=1191
Score = 1812 bits (981), Expect = 0.0
Identities = 1132/1203 (94%), Gaps = 18/1203 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCATTGCAGGTATCAAGATTAGTTCTTTCGTCATCTTCTTCTAGTACAAGACCT 60
||||||||||||||||| |||||||||||||||||||| ||||||||| | | ||
Sbjct 1 ATGGCTTCATTGCAGGTTTCAAGATTAGTTCTTTCGTCTTCTTCTTCT--T-C---TTCT 54
Query 61 AAAGCAGCAGTTTCAATCCCGAAGCTACCGAAATTTCACGTCTCGGTTCCGAAAATACCG 120
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 55 AAAGCAGCAGTTTCAATCCCGAAACTACCGAAATTTCACGTCTCCGTTCCGAAAATACCG 114
Query 121 ACTTTATCGGTTAAAGAACCGAGCTTTGAGTTTGTAGAAAGTCTTCCTCTTTCGTTGAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 115 ACTTTATCGGTTAAAGAACCGAGCTTTGAGTTTGTAGAAAGTCTTCCTCTTTCATTGAAA 174
Query 181 CAAAAGAGAGGTTCTGATTCTATCCAAA-GAACTCGTCTCAATGCGGTTCTTGAAGAAGT 239
|| | ||| || ||||| || ||||||| | | ||||| ||||| ||||||||||||||
Sbjct 175 CAGAGGAGGGGCTCTGAGTCGATCCAAAGGGA-GCGTCTTAATGCAGTTCTTGAAGAAGT 233
Query 240 TATGGATAGGATTGAGATGCACAAGAACATCGGAGATCAACGTAACAATTGGAACTCTTT 299
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 234 TATGGATAGGATTGAGATGCACAAGAACATTGGAGATCAACGTAACAATTGGAACTCTCT 293
Query 300 ACTGCTCAATTCTGTCAACATGATTACTCTCACTGCCGCTTTGATGGCCGGAATAGCCTC 359
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 294 ATTGCTCAATTCTGTCAACATGATTACTCTCACCGCAGCTTTGATGGCCGGAATAGCCTC 353
Query 360 GGTTAACGGTCACGGTGTAGATTCTGTAACCGCTGTGAAGATAGCTTCAACGGTGTTGTT 419
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 354 GGTTAATGGTCACGGTGTAGATTCTGTGACCGCGGTGAAGATAGCTTCAACGGTGTTGTT 413
Query 420 AACATCTGCGACGGGTTTTGCTGCCTTGATGAGCAAGATTCAACCTTCGCAGCTAGCTGA 479
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AACATCTGCAACGGGTTTCGCTGCCTTGATGAGCAAGATTCAACCTTCGCAGCTAGCTGA 473
Query 480 AGAACAGAGGAACGCGACGAGGCTGTTCAAGAAGCTGAGAGTCGAAATCGAAATGTTTCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 474 AGAACAGAGGAACGCGACGAGGCTGTTCAAGAAGCTGAGAGTCGAAATCGAAAAGTTTCT 533
Query 540 GAGAGAAAACGAGGAGATCGAAGAAGAAGATGTTAAGGAAGTGATAAAGAGAGTGTTGTC 599
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 534 GAGAGAAAACGAGGAGATCGAAGAAGAAGATGTGAAGGAAGCGATAAAGAAAGTGTTGTC 593
Query 600 TCTAGATAAAGCTTATCCTCTTCCTCTGATCGGAACAATGCTCGAGAAGTTTCCGGAAGA 659
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 TCTAGACAAAGCTTACCCTCTTCCTCTGATCGGAACAATGCTTGAGAAGTTTCCGGAAGA 653
Query 660 GTTTAAACCGGCGACTTGGTGGCCTGAAAACAA--GGAGAAAAACCCTAAAA-CTAGT-C 715
||| ||||||||||||||||||||||||||||| || ||||| |||||||| | || |
Sbjct 654 GTTCAAACCGGCGACTTGGTGGCCTGAAAACAAAAGG-GAAAA-CCCTAAAAGC--GTTC 709
Query 716 TTGCGAATGGATGGAGTCAAGAGCTTGAGGCGGAGATGAGAGAAGTTGCTCATGTGGTGA 775
|||||||||| ||||| |||||||| || | ||||||||||||||||||| ||||||||
Sbjct 710 TTGCGAATGGGTGGAGCCAAGAGCTCCAGACCGAGATGAGAGAAGTTGCTCGTGTGGTGA 769
Query 776 AGAGCAGAGACGCAGAAGAGTATGAGAAATTAGGTCACGTGGCGTTGAAGCTAAACCGGT 835
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 770 AGAGCAGAGACGCAGAAGAGTATGAGAAATTAGGTAACGTGGCGTTGAAGCTAAACCGGT 829
Query 836 TCTTGGCTATCTCTGGACCAGTTTTAACCGGAGTTTCTGCTGTAAGCTCTGTCTTT-ATC 894
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 830 TCTTGGCTATCTCTGGACCAGTTTTAACCGGAGTTTCTGCTGTAAGCTCTGT-TTTCATC 888
Query 895 GGTCAAGATTCCGGTTTAGCTGGAATCGTGGCGATGACTTGTGCTTCTTTGGCTGCGGTT 954
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 889 GGTCAAGATTCCGGTTTAGCCGGAATCGTGGCAATGACTTGTGCTTCTTTGGCTGCGGTT 948
Query 955 GTCAACACTTTAGAGCATGGTGGTCAAGTGGGAATGGTGTTTGAGATGTATAGAAACTCA 1014
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GTCAACACTTTAGAACATGGTGGTCAAGTGGGAATGGTGTTTGAGATGTATAGAAACTCA 1008
Query 1015 GCTGGATTCTTCTCTCTATTAGAAGAAACTATGAAATCGACGGAGAAGAGAGAGAACGGA 1074
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1009 GCTGGATTCTTCTCTCTATTAGAAGAAACGATGAAATCGACAGAGAAGAGAGAGAACGGA 1068
Query 1075 CAAGTGTTTGAGACAAGAGTTGCGGTGAAGCTAGGGAGAAGCTTATCAGAACTGAGAGAT 1134
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1069 CAAGTGTTTGAGACAAGAGTTGCGGTGAAGCTAGGGAGAAGCTTATCGGAACTGAGAGAT 1128
Query 1135 CTCGCGAAAAGATCGAATCTCTCTCAGGTTAAGGCCAAAGAATTCGCTAGCAAGCTTTTC 1194
|||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 1129 CTCGCGAAAAGATCGAATCTCTCTCAGGTTGAGGCTAATGAATTCGCAAGCAAGCTTTTC 1188
Query 1195 TAG 1197
|||
Sbjct 1189 TAG 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5