BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04490.1
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516 3048 0.0
Ahg943226 jgi|Araly1|943226|scaffold_603770.1 900 0.0
Ahg895523 jgi|Araly1|895523|Al_scaffold_0006_3519 872 0.0
Ahg913379 jgi|Araly1|913379|Al_scaffold_0001_3633 828 0.0
Ahg895521 jgi|Araly1|895521|Al_scaffold_0006_3517 813 0.0
Ahg490098 jgi|Araly1|490098|fgenesh2_kg.6__3232__AT4G04510.1 695 0.0
> Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516
Length=1977
Score = 3048 bits (1650), Expect = 0.0
Identities = 1876/1985 (95%), Gaps = 16/1985 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAGATCCAATCTTTTCCACATCCCTTGTTTTCTTCTCTTATTTCTTCTCTTCAAC 60
||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACATCCCTTCTTTTCCACTTCCCTTGTTTTCTTCTCTTATTTCTTCTCTTCAAC 60
Query 61 ATCAATGGCGTTCACACTACCTTCGTCTGCGGCGACGAAGACTTCTCTCCAAACACAAGC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 61 ATCAATGGCGTTCACACCACCTTCGTCTGCGGCGACGAAGACTTCTCTCCAAACAAAACC 120
Query 121 TA-CGTTGAAAACCTCGAAT-CTCTCTTGCCTTCTCTTGCTTCAAACGTCATACGAGAAC 178
|| || |||||||| | || |||||||| ||||||||||||||||||| | | ||||||
Sbjct 121 TACCG-CGAAAACCTTG-ATGCTCTCTTGTCTTCTCTTGCTTCAAACGTTACAAGAGAAC 178
Query 179 GTGGTTTCTACAACGTTTCGCTAGACGGAGTTTACGCTCTTGCCCTATGTCGAAAACACT 238
| ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 179 GCGGTTTCTACAACGCTTCGCTAGACGGAGTCCACGCTCTTGCCCTTTGTCGAAAACACT 238
Query 239 ACGAAGTTCAAGCTTGTCGTCGCTGCGTCGATAGAGCAAGTAGGACTCTGTTAACACAAT 298
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 239 ACGAAGTACAAGCTTGTCGTCGCTGCGTTGATAGAGCAAGTAGGACTCTATTAACACAAT 298
Query 299 GCCGAGGCAAAACAGAAGCATATCACTGGGATTCCGAAAACGATGCAAACGTTTCTTGTC 358
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCCAAGGCAAAACAGAAGCATATCACTGGGATTCCGAAAACGATGCAAACGTTTCTTGTC 358
Query 359 TAGTACGCTACTCAAATATCCATAGATTTGGCAAACTAAAGCTTGAGCCAATAGGGAATG 418
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 359 TAGTACGCTACTCAAATATCCATACATTTGGCAAACTAAAGCTTGAGCCAATTGGGAATG 418
Query 419 TTCCTCACTCGAGTCTTGACCCCTCTTCCAATCTAACCCGAATCAGCCAAGAGTTTGCCG 478
||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TTCCTCACTCGAGTCTTCTCACCTCTTCCAATCTGACCCGAATCAGCCAAGAGTTTGCCG 478
Query 479 CCAGGGCTAATCGAACAGTTGAGGTTGCGTCCACAGCTGATGAGTCTTCGGTATTGAAGT 538
||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 479 CCATGGCTAATCGAACTGTTGAGGTTGCATCCACGGCTGATGAGTCTTCGGTATTCAAGT 538
Query 539 ATTATGGAGTCTCAAGTGCAGAGTTTACAGACACTCCTGAGGTTAATATGTTGATGCAAT 598
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACTATGGAGTCTCGAGTGCAGAGTTTACAGACACTCCTGAGGTTAATATGTTGATGCAAT 598
Query 599 GCACACCTGATTTATCTTCCAGTGACTGTAATCATTGTCTGAGAGAAAATGTTAGGTATA 658
||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct 599 GCACACCTGATTTATCTTCTAGTGACTGTAATCATTGCCTAAGAGAGAATGTTAGGTATA 658
Query 659 ATCAAGAACATAACTGGGACAGAGTTGGAGGAACAGTTGCCCGTCCTAGTTGTTATTTCC 718
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 659 ATCAAGAACATAACTGGGACAGAGTTGGGGGAACGGTTGCGCGTCCTAGTTGTTATTTCC 718
Query 719 GATGGGATG-ATTACAGATTCGCAGGAGCTTTCGATAACCTAGAGAGAGTTCCCGCGCCT 777
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 GATGGGATGCA-TACAGATTCGCAGGAGCTTTCGATAATCTAGAGAGAGTTCCCGCGCCT 777
Query 778 CCTCGATCTCCTCAAACTCGACAAGATTATCGGGTCAAGAAAGGAAGAATGTTTCAACCA 837
|||||| |||||||| ||||| |||||| ||||| ||||||||||||||| |||||||||
Sbjct 778 CCTCGACCTCCTCAACCTCGAGAAGATTCTCGGGACAAGAAAGGAAGAATTTTTCAACCA 837
Query 838 TGGAGCGTTGTGGTTGTTGTTTTCCCTACGGGCATAAATCTTGCCGTGTTTGTCGCTTTC 897
||||||||||||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||
Sbjct 838 TGGAGCGTTGTGGTTATTGTTTTTCCTACGGTCATTAATCTTGCCGTGTTTGTTGCTTTC 897
Query 898 GTGCTTGCTTATCGCCGGATGCGGAGGAGGATTTATACTGAAATCAATAAGAATTCTGAT 957
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 GTGCTTGCTTATCGCCGGATGCGGAGGAGGATTTATGCTGAAATCAATAAGAATTCTGAT 957
Query 958 TCTGATGGTCAAGCTACGTTAAGATTTGATCTTGGCATGATCTTAATTGCAACCAATGAG 1017
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 TCTGATGGTCAATCTACGCTAAGATTTGATCTTGGCATGATCTTAATTGCAACCGATGAG 1017
Query 1018 TTCTCCCTTGAAAATAAGCTTGGACAAGGTGGGTTTGGATCTGTCTACAAGGGGATATTA 1077
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TTCTCCCCTGAAAATAAGCTTGGACAAGGTGGATTTGGATCTGTCTACAAGGGGATATTA 1077
Query 1078 CCGAGCGGGCAAGAGATAGCGGTAAAGAGATTAGCTGGAGGCTCAGGACAAGGAGAACTA 1137
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1078 CCGAGCGGGCAAGAGATAGCGGTAAAGAGATTAGCTAGAGGTTCAGGACAAGGAGAACTA 1137
Query 1138 GAGTTTAAGAATGAAGTCTTACTCTTGACAAGACTCCAACATAGGAATCTAGTTAAGCTT 1197
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 GAGTTAAAGAATGAAGTCTTACTTTTGACAAGACTCCAACATAGGAATCTAGTTAAGCTT 1197
Query 1198 CTTGGATTCTGTAATGAAGGAAATGAAGAGATTCTTGTCTACGAGCATG-TCCCTAATTC 1256
||||||||||||||||||||||| || ||||||||||| |||||||||| |||| |||||
Sbjct 1198 CTTGGATTCTGTAATGAAGGAAACGAGGAGATTCTTGTTTACGAGCATGTTCCC-AATTC 1256
Query 1257 AAGTCTTGATCACTTTATCTTTGACGAAGACAAACGTTGGCTTCTTACATGGGATGTGAG 1316
||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||
Sbjct 1257 AAGTCTTGATCACTTTATCTTCGATGAAGATAAGCGATGGCTTCTTACATGGGATGTGAG 1316
Query 1317 GTACAGAATCATAGAAGGAGTTGCAAGAGGACTTCTTTATCTCCATGAAGATTCTCAGTT 1376
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 GTACAGAATCATAGAAGGAGTTGCAAGAGGGCTTCTTTATCTCCATGAAGATTCTCAGTT 1376
Query 1377 GAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAACCC 1436
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAGGATTATTCACAGAGACTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAACCC 1436
Query 1437 TAAAGTTGCAGACTTTGGGATGGCGAGGTTGTTTAACATGGATGAGACTCGAGGAGAGAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TAAAGTTGCAGACTTTGGGATGGCGAGGTTGTTTAACATGGATGAGACTCGAGGAGAGAC 1496
Query 1497 AAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGTGAGACATGGACAATT 1556
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1497 AAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGTAAGACATGGACAATT 1556
Query 1557 CTCAGCTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGGAGATGATAAGTGGTGa 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTCAGCTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGGAGATGATAAGTGGTGA 1616
Query 1617 aaaaaaTAAGAACTTTGAAACAGAAGGACTTCCTGCTTTTGCATGGAAGAGATGGATAGA 1676
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1617 AAAAAATAAGAACTTTGAAACAGAAGGACTTCCAGCTTTTGCATGGAAGAGATGGATAGA 1676
Query 1677 AGGAGAGCTTGAGAGTATAATCGATCCTTACTTAAACGAGAATCCAAGAAACGAGATCAT 1736
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1677 AGGAGAGCTTGAGAGTATAATCGACCCTTACTTAAACGAGAATCCGAGAAACGAGATCAT 1736
Query 1737 AAAGTTGATTC-AGATTGGTTTGTTGTGTGTTCAAGAGAATGCAGCAAAGAGACCAACCA 1795
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AAAGTTAAT-CGAGATTGGTTTGTTGTGTGTTCAAGAGAATGCAGCAAAGAGACCAACCA 1795
Query 1796 TGAACTCTGTAATAACTTGGCTTGCAAGAGACGGTACTTTTACA-ATACCTAAACCTACA 1854
||||||| |||||| |||||||||| ||||||||||| |||| | |||||||||||||||
Sbjct 1796 TGAACTCAGTAATAGCTTGGCTTGCGAGAGACGGTACCTTTA-ATATACCTAAACCTACA 1854
Query 1855 GAAGCTGCTTTCGTCACTCTGCCTCTCTCGGTGAAACCTGA-AAATAGG-TCCATGAGTG 1912
|||||||||||||||||||| |||||||||||||||||| | |||| || ||||||| |
Sbjct 1855 GAAGCTGCTTTCGTCACTCTCCCTCTCTCGGTGAAACCT-ACAAAT-GGATCCATGAATA 1912
Query 1913 AGCGTAAAGACAAAGATCCGTTTTCAGTGGATGAGGTCTCGATTACAGTCTTGTATCCTC 1972
||| ||||||||| ||||||||||| |||||||||||||||||||| || ||| |||| |
Sbjct 1913 AGCTTAAAGACAAGGATCCGTTTTCTGTGGATGAGGTCTCGATTACGGTGTTGAATCCCC 1972
Query 1973 GGTGA 1977
|||||
Sbjct 1973 GGTGA 1977
> Ahg943226 jgi|Araly1|943226|scaffold_603770.1
Length=1930
Score = 900 bits (487), Expect = 0.0
Identities = 754/881 (86%), Gaps = 26/881 (3%)
Strand=Plus/Plus
Query 952 TCTGATTCTGATGGTCAAGCT-ACGTTAAGATTTGATCTTGGCATGATCTTAATTGCAAC 1010
|||||||||||||||||| | | |||| | ||||||||||| ||||||||||| |||||
Sbjct 921 TCTGATTCTGATGGTCAA-TTCATGTTACGGTTTGATCTTGGTATGATCTTAATGGCAAC 979
Query 1011 CAATGAGTTCTCCCT-TGAAAATAAGCTTGGACAAGGTGGGTTTGGAT-CTGTCTACAAG 1068
| |||| |||| | | |||||||| |||||| |||||||| ||||| | | ||||| |||
Sbjct 980 CGATGACTTCT-CTTCTGAAAATACGCTTGGCCAAGGTGGATTTGG-TACGGTCTATAAG 1037
Query 1069 GGGATATTACCGAGCGGGCAAG-AGATAGCGGTAAAGAGATTAGCTGGAGGCTCAGGACA 1127
|||| ||| || | |||||||| || ||||||| |||||| || | ||| ||||||||
Sbjct 1038 GGGACATTCCCAAACGGGCAAGAAG-TAGCGGTCAAGAGACTAACAAAAGGATCAGGACA 1096
Query 1128 AGGAGA-ACTAGAGTTTAAGAATGAAGTCTT-ACTCTTGACAAGACTCCAACATAGGAAT 1185
|||||| | | |||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1097 AGGAGATA-TGGAGTTTAAGAATGAGGT-TTCACTCTTGACAAGACTCCAACATAGGAAT 1154
Query 1186 CTAGTTAAGCTTCTTGGATTCTGTAATGAAGGAAATGAAGAGATTCTTGTCTACGAGCAT 1245
|| |||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1155 CTTGTTAAGCTTCATGGGTTCTGTAATGAAGGAGATGAAGAGATTCTTGTCTACGAGTTT 1214
Query 1246 GTCCCTAATTCAAGTCTTGATCACTTTATCTTTGACGAAGACAAACGTTGGCTTCTTACA 1305
||||| || |||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 1215 GTCCCCAACTCAAGTCTTGATCACTTTATCTTTGATGAAGACAAGCGTTCTCTTCTTACA 1274
Query 1306 TGGGATGTGAGGTACAGAATCATAGAAGG-AGTTGC-AAGAGGACTTCTTTATCTCCATG 1363
||||| ||||||| |||||| |||||||| | |||| || ||| ||||| ||||||||||
Sbjct 1275 TGGGAGGTGAGGTTCAGAATTATAGAAGGCA-TTGCTAA-AGGTCTTCTCTATCTCCATG 1332
Query 1364 AAGATTCTCAGTTGAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACG 1423
||||||||||| ||| ||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct 1333 AAGATTCTCAGATGAAGATTATTCATAGAGACTTGAAGGCAAGCAACATACTTTTAGACG 1392
Query 1424 CGGAGATGAACCCTAAAGTTGCAGACTTT-GGGA-TGGCGAGGTTGTTTAACATGGATGA 1481
| ||||||||||||||||||||||| ||| |||| | || ||| |||| ||| |||||
Sbjct 1393 CAGAGATGAACCCTAAAGTTGCAGA-TTTCGGGACT-GCTAGGCTGTTCGACACCGATGA 1450
Query 1482 GACTCGAGGAGAGACAAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTA-CG 1540
|||||||| || ||||| ||| ||| ||||||| ||||||||||||||| || || |
Sbjct 1451 GACTCGAGCTGAAACAAGAAGAATAGCTGGAACCCGCGGATATATGGCTCCCGAATATC- 1509
Query 1541 TGAGACATGGACAATTCTCAGCTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGG 1600
|||| || || ||| |||| ||||||||||| ||||||||||| |||||||||||| | |
Sbjct 1510 TGAGTCACGGGCAAATCTCGGCTAAATCTGACGTTTATAGCTTTGGTGTTATGCTTCTAG 1569
Query 1601 AGATGATAAGTGGTGaaaaaaaTAAGAACTTTGAAACAGAAGGACTTCCTGCTTTTGCAT 1660
||||||||||||||| || ||| || | ||||||| |||||||||| | |||||| |||
Sbjct 1570 AGATGATAAGTGGTGGAAGAAACAATAGCTTTGAAGGAGAAGGACTTGCAGCTTTTACAT 1629
Query 1661 GGAAGAGATGGATAGAAGGAGAGCTTGAGAGTATAATCGATCC-TTACTT-AAACGAGAA 1718
||||||||||| | |||||| ||| ||||| |||||| ||||| ||| || | | || ||
Sbjct 1630 GGAAGAGATGGGTTGAAGGAAAGCCTGAGATTATAATTGATCCTTTA-TTGATA-GAAAA 1687
Query 1719 TCCAAGAAACGAGATCATAAAGTTGATTCAGATTGGTTTGTTGTGTGTTCAAGAGAATGC 1778
|||||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||
Sbjct 1688 TCCAAGAAACGAGATCGTCAAGTTGATCCAGATTGGATTGTTGTGTGTTCAAGAGAATGC 1747
Query 1779 AGCAAAGAGACCAACCATGAACTCTGTAATAACTTGGCTTG 1819
|||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1748 AGCAAAGAGACCAAACATGAGCTCTGTAATAATTTGGCTTG 1788
> Ahg895523 jgi|Araly1|895523|Al_scaffold_0006_3519
Length=1980
Score = 872 bits (472), Expect = 0.0
Identities = 745/877 (85%), Gaps = 18/877 (2%)
Strand=Plus/Plus
Query 952 TCTGATTCTGATGGTCAAGCTACGTTAAGATTTGATCTTGGCATGATCTTAATTGCAACC 1011
|||||||||||||||||| || |||||| |||||| |||| ||||||||||| |||||
Sbjct 991 TCTGATTCTGATGGTCAATTTATGTTAAGGTTTGATATTGGTATGATCTTAATGGCAACT 1050
Query 1012 AATGAGTTCTCCCT-TGAAAATAAGCTTGGACAAGGTGGGTTTGGAT-CTGTCTACAAGG 1069
||||| |||| | | |||||| | |||||| |||||||| ||||| | | ||||| ||||
Sbjct 1051 AATGACTTCT-CGTCTGAAAACACGCTTGGCCAAGGTGGATTTGG-TACGGTCTATAAGG 1108
Query 1070 GGATATTACCGAGCGGGCAAGAGATAGCGGTAAAGAGATTAGCTGGAGGCTCAGGACAAG 1129
||| ||||| | |||||||||||||||||| |||||| || | ||| ||||||||||
Sbjct 1109 GGAAATTACTAAACGGGCAAGAGATAGCGGTGAAGAGACTAACAAAAGGTTCAGGACAAG 1168
Query 1130 GAGA-ACTAGAGTTTAAGAATGAAGTCTT-ACTCTTGACAAGACTCCAACATAGGAATCT 1187
|||| | ||||||| |||||||| || || ||| ||||||||||||||||||||||||||
Sbjct 1169 GAGATA-TAGAGTTCAAGAATGAGGT-TTCACTATTGACAAGACTCCAACATAGGAATCT 1226
Query 1188 AGTTAAGCTTCTTGGATTCTGTAATGAAGGAAATGAAGAGATTCTTGTCTACGAGCATGT 1247
||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| |||
Sbjct 1227 AGTTAAGCTTCTTGGGTTCTGTAATGACGGAGATGAACAGATTCTTGTCTACGAGTTTGT 1286
Query 1248 CCCTAATTCAAGTCTTGATCACTTTATCTTTGACGAAGACAAACGTTGGCTTCTTACATG 1307
||| || ||||||||||||||||||||||| || ||||| || |||| |||||||||||
Sbjct 1287 CCCCAACTCAAGTCTTGATCACTTTATCTTCGATGAAGAGAAGCGTTCACTTCTTACATG 1346
Query 1308 GGATG-TGAGGTACAGAATCATAGAAGG-AGTTGCAAGAGGACTTCTTTATCTCCATGAA 1365
||| | |||| | |||||| |||||||| | |||| |||| ||||||||||| ||||||
Sbjct 1347 GGA-GATGAGATGCAGAATTATAGAAGGCA-TTGCTCGAGGTCTTCTTTATCTTCATGAA 1404
Query 1366 GATTCTCAGTTGAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCG 1425
||||||||| | | |||||||||| |||| ||||||||||| || ||||||||||| ||
Sbjct 1405 GATTCTCAGCTAAAGATTATTCACCGAGACTTGAAGGCAAGTAACATCCTTTTAGATGCA 1464
Query 1426 GAGATGAACCCTAAAGTTGCAGACTTTGGGATGGCGAGGTTGTTTAACATG-GATGAGAC 1484
|||||||| ||||||||| |||| ||||||| ||||||||||| || | ||||||||
Sbjct 1465 GAGATGAATCCTAAAGTTTCAGATTTTGGGACAGCGAGGTTGTTCGAC-TCCGATGAGAC 1523
Query 1485 TCGAGGAGAGACAAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGTGAG 1544
|||| || |||| ||| ||| ||||||| |||||||||||||| |||||| |||
Sbjct 1524 CCGAGCTGAAACAAAAAGAATAGCTGGAACCCGTGGATATATGGCTCCCGAGTACTTGA- 1582
Query 1545 A-CATGGACAATTCTCAGCTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGGAGA 1603
| ||||| ||| |||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 1583 ATCATGGGCAAATCTCAGCTAAATCTGACGTTTATAGCTTCGGTGTTATGCTTCTAGAGA 1642
Query 1604 TGATAAGTGGTGaaaaaaaTAAGAACTTTGAAACAGAAGGACTTCCTGCTTTTGCATGGA 1663
|||||| |||||||| ||| || | ||| ||| |||||||||| | || ||||||||||
Sbjct 1643 TGATAAATGGTGAAAGAAACAATAGCTTCGAAGGAGAAGGACTTGCAGCATTTGCATGGA 1702
Query 1664 AGAGATGGATAGAAGGAGAGCTTGAGAGTATAATCGATCCTTACTTAA-ACGAGAATCCA 1722
| |||||| | |||||| ||| ||||| | |||| ||||||| ||| | | |||||||||
Sbjct 1703 AAAGATGGGTTGAAGGAAAGCCTGAGATTGTAATTGATCCTTTCTTGATA-GAGAATCCA 1761
Query 1723 AGAAACGAGATCATAAAGTTGATTCAGATTGGTTTGTTGTGTGTTCAAGAGAATGCAGCA 1782
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| || ||
Sbjct 1762 AGAAACGAGATCATAAAGCTGATTCATATTGGCTTGTTGTGTGTTCAAGAGAATCCAACA 1821
Query 1783 AAGAGACCAACCATGAACTCTGTAATAACTTGGCTTG 1819
|||||||||||||||| ||||||||||| ||||||||
Sbjct 1822 AAGAGACCAACCATGAGCTCTGTAATAATTTGGCTTG 1858
> Ahg913379 jgi|Araly1|913379|Al_scaffold_0001_3633
Length=1965
Score = 828 bits (448), Expect = 0.0
Identities = 743/883 (84%), Gaps = 30/883 (3%)
Strand=Plus/Plus
Query 952 TCTGATTCTGATGGTCAAGCTACGTTAAGATTTGATCTTGGCATGATCTTAATTGCAACC 1011
|||||||||||||| ||| || |||| | ||||||||||| ||||||||| | |||||
Sbjct 976 TCTGATTCTGATGGACAATTTATGTTACGGTTTGATCTTGGTATGATCTTAGTGGCAACT 1035
Query 1012 AATGAGTTCTCCCT-TGAAAATAAGCTTGGACAAGGTGGGTTTGGAT-CTGTCTACAAGG 1069
||||| || | | | ||| |||| |||||| || ||||| ||||| | ||||||| ||||
Sbjct 1036 AATGACTT-TTCGTCTGAGAATACGCTTGGCCAGGGTGGATTTGG-TACTGTCTATAAGG 1093
Query 1070 GGATATTACCGAGCGGGCAAGAGATAGCGGTAAAGAGATTAGCTGGAGGCTCAGGACAAG 1129
||| ||||| | ||||||||||||||| || |||||| || | |||| || || ||||
Sbjct 1094 GGACATTACTAAACGGGCAAGAGATAGCCGTGAAGAGACTAACAAGAGGTTCGGGGCAAG 1153
Query 1130 GAGA-ACTAGAGTTTAAGAATGAAGTCTTACTC--TTGACAAGACTCCAACATAGGAATC 1186
|||| | | |||||||||||||| || || ||| |||||||||||||||||||||||||
Sbjct 1154 GAGATA-TGGAGTTTAAGAATGAGGT-TT-CTCTATTGACAAGACTCCAACATAGGAATC 1210
Query 1187 TAGTTAAGCTTCTTGGATTCTGTAATGAAGGAAATGAAGAGATTCTTGTCTACGAGCATG 1246
| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1211 TGGTTAAGCTTCTTGGGTTCTGTAATGAAGGAGATGAAGAGATTCTTGTTTACGAGTTTG 1270
Query 1247 TCCCTAATTCAAGTCTTGATCACTTTATCTTTGACGAAGACAAACGTTGGCTTCTTACAT 1306
|||| |||||||||||||||||||||||||| || ||||| || |||| |||||||||||
Sbjct 1271 TCCCCAATTCAAGTCTTGATCACTTTATCTTCGATGAAGAGAAGCGTTCGCTTCTTACAT 1330
Query 1307 GGGATG-TGAGGTACAGAATCATAGAAGG-AGTTGCAAGAGGACTTCTTTATCTCCATGA 1364
|||| | |||| | |||||| |||||||| | |||| |||| |||||||||||||||||
Sbjct 1331 GGGA-GCTGAGATGCAGAATTATAGAAGGCA-TTGCTCGAGGTCTTCTTTATCTCCATGA 1388
Query 1365 AGATTCTCAGTTGAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGC 1424
|||||||||| ||| |||||||||| |||| |||||||||||||| || |||||||||||
Sbjct 1389 AGATTCTCAGCTGAAGATTATTCACCGAGACTTGAAGGCAAGCAACATTCTTTTAGACGC 1448
Query 1425 GGAGATGAACCCTAAAGTTGCAGACTTTGGGATGGCGAGGTTGTT-TAA-CATGGATGAG 1482
|||||||||||||| ||||| |||||||||| ||||| ||||| || | | ||||||
Sbjct 1449 TGAGATGAACCCTAAGGTTGCCGACTTTGGGACAGCGAGATTGTTCGAAGC-T-GATGAG 1506
Query 1483 ACTCGAGGAGAGACAAGCA-GAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGT 1541
||||||| || ||||| | || ||| ||||||| || ||||||||||| || ||| |
Sbjct 1507 ACTCGAGCTGAAACAAG-ACGAATAGCTGGAACCCGTGGGTATATGGCTCCCGAATACCT 1565
Query 1542 GAGA-CATGGACAATTCTCAGCTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGG 1600
|| | || |||||| |||||||||||||||| ||||||||||| |||||||||||| | |
Sbjct 1566 GA-ATCACGGACAAATCTCAGCTAAATCTGACGTTTATAGCTTTGGTGTTATGCTTCTAG 1624
Query 1601 AGATGATAAGTGGTGaaaaaaaTAAGAACTTTGAAACAGAAGGACTT-CCTGCTTTTGCA 1659
|||| ||||||||||||| ||| || | ||| | | |||||||||| || |||||||||
Sbjct 1625 AGATAATAAGTGGTGAAAGAAACAATAGCTTCGTAGGAGAAGGACTTGCC-GCTTTTGCA 1683
Query 1660 TGGAAGAGATGGATAGAAGGAGA-GCTTGAGAGTATAATCGATCCTTACTT-AAACGAGA 1717
|||||||||||| | |||||| | | |||||||||||| |||| || ||| | | ||
Sbjct 1684 TGGAAGAGATGGGTTGAAGGAAATAC-TGAGAGTATAATTGATCATTTCTTGATA-GATC 1741
Query 1718 ATCCAAGAAACGAGATCATAAAGTTGATTCAGATTGGTTTGTTGTGTGTTCAAGAGAATG 1777
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1742 GGCCAAGAAACGAGATCATTAAGTTGATCCAAATTGGTTTGTTGTGTGTTCAAGAGAATG 1801
Query 1778 CAGCAAAGAGACCAACCATGAA-CTCTGTAATAACTTGGCTTG 1819
||||||||||||||||||| || |||||| ||| ||||||||
Sbjct 1802 CAGCAAAGAGACCAACCAT-AAGCTCTGTTATAGTTTGGCTTG 1843
> Ahg895521 jgi|Araly1|895521|Al_scaffold_0006_3517
Length=1944
Score = 813 bits (440), Expect = 0.0
Identities = 609/690 (88%), Gaps = 14/690 (2%)
Strand=Plus/Plus
Query 960 TGATGGTCAAGCTACGTTAAGATTTGATCTTGGCATGA-TCTTAATTGCAACCAATGAGT 1018
|||||||||| ||| |||| | ||||||||| | |||| || ||| |||||||||| | |
Sbjct 969 TGATGGTCAATCTATGTTACGTTTTGATCTTCGAATGATTC-TAACTGCAACCAATAACT 1027
Query 1019 TCTCCCTTGAAAATAAGCTTGGACAAGGTGGGTTTGGATCTGTCTACAAGGGGATATTAC 1078
|||| || |||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1028 TCTCTCTAGAAAATAAGCTTGGCCAAGGTGGATTTGGATCTGTCTACAAGGGAATATTAC 1087
Query 1079 CGAGCGGGCAAGAGATAGCGGTAAAGAGATTAGCTGGAGGCTCAGGACAAGGA-GAACTA 1137
||||||| |||||||||||||||||||||||| | ||| ||||| |||||| | | |
Sbjct 1088 CGAGCGGACAAGAGATAGCGGTAAAGAGATTAACAAAAGGTTCAGGGCAAGGAGGTA-TG 1146
Query 1138 GAGTTTAAGAATGAAGTCTTACTCTTGACAAGACTCCAACATAGGAATCTAGTTAAGCTT 1197
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1147 GAGTTCAAGAACGAGGTCTTACTCTTGACAAGACTCCAACATAGGAATCTGGTTAAGCTT 1206
Query 1198 CTTGGATTCTGTAATGAAGGAA-ATGAAGAGATTCTTGTCTACGAGCA-T-GTCCCTAAT 1254
||||| || ||||||||| || ||||||| |||||||||||||| | | |||||||||
Sbjct 1207 CTTGGGTTTTGTAATGAA-AAAGATGAAGAAATTCTTGTCTACGA--ATTCGTCCCTAAT 1263
Query 1255 TCAAGTCTTGATCACTTTATCTTTGACGAAGACAAACGTTGGCTTCTTACATGGGATGTG 1314
||||| || || ||||| || || || ||||| ||||| ||||||| ||||||||||||
Sbjct 1264 TCAAGCCTCGACCACTTCATATTCGATGAAGAAAAACGCCGGCTTCTGACATGGGATGTG 1323
Query 1315 AGGTACAGAATCATAGAAGGAGTTGCAAGAGGACTTCTTTATCTCCATGAAGATTCTCAG 1374
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1324 AGGTACAGAATCATAGAAGGAGTTGCAAGAGGGCTTCTTTATCTCCATGAAGATTCTCAG 1383
Query 1375 TTGAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAAC 1434
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1384 TTGAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTGTTAGACGCGGAGATGAAC 1443
Query 1435 CCTAAAGTTGCAGACTTTGGGATGGCGAGGTTGTTTAACATGGATGAGACTCGAGGAGAG 1494
||||| |||||||||||||||||||| ||| |||| | ||||| |||||||||||| ||
Sbjct 1444 CCTAAGGTTGCAGACTTTGGGATGGCAAGGCTGTTCGATATGGACGAGACTCGAGGACAG 1503
Query 1495 ACAAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGTGAGACATGGACAA 1554
||||||||||| |||||||| || |||||||||||||| || |||| || | ||||||||
Sbjct 1504 ACAAGCAGAGTGGTTGGAACATATGGATATATGGCTCCAGAATACGCGACATATGGACAA 1563
Query 1555 TTCTCAGCTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGGAGATGATAAGTGGT 1614
||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||
Sbjct 1564 TTCTCAGCTAAATCTGATGTTTATAGCTTTGGTGTCATGCTTCTAGAGATGATAAGTGGT 1623
Query 1615 Gaaaaa-aaTAAGAACTTTG-AAACAGAAG 1642
|||| ||||| || |||| ||| |||||
Sbjct 1624 -AAAAGCAATAAAAA-TTTGGAAAAAGAAG 1651
> Ahg490098 jgi|Araly1|490098|fgenesh2_kg.6__3232__AT4G04510.1
Length=1985
Score = 695 bits (376), Expect = 0.0
Identities = 701/857 (82%), Gaps = 25/857 (3%)
Strand=Plus/Plus
Query 956 ATTCTGATGGTCAAGCTACGTTAAGATTTGATCTTGGCATGATCTTAATTGCAACCAATG 1015
|||||| ||||||| ||||| || | || ||| || | |||||| |||| ||||| | |
Sbjct 953 ATTCTGGTGGTCAATCTACGCTACGGTTCGATTTTAGTATGATCCTAATCGCAACGGACG 1012
Query 1016 AGTTCTCCCTTGAAAATAAGCTTGGACAAGGTGGGTTTGGATCTGTCTACAAGGGGATAT 1075
| ||||| ||||||||||| |||| |||||||| |||||||||||||||||||||| ||
Sbjct 1013 ATTTCTCATTTGAAAATAAGATTGGCCAAGGTGGATTTGGATCTGTCTACAAGGGGAAAT 1072
Query 1076 TACCGAGCGGGCAAGAGATAGCGGTAAAGAGATTAGCTGGAGGCTCAGGACAAGGAGAAC 1135
||||| | ||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1073 TACCGGGAGGGCAAGTGATAGCGGTAAAGAGATTAACAAGAGGCTCAGGACAAGGAGAAA 1132
Query 1136 TAGAGTTTAAG-AATGAAGTCTTACTCTTGACAAGACTCCAACATAGGAATCTAGTTAAG 1194
|||||||| || || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1133 TAGAGTTT-AGAAACGAGGTCTTACTCTTGACAAGACTCCAGCATAGGAATCTAGTTAAG 1191
Query 1195 CTTCTTGGATTCTGTAATGAAGGAAATGAAGAGATTCTTGTCTACGAGCATGTCCCTAAT 1254
||||||||||| |||||||||||| |||||||| ||||||| |||||| |||||| |||
Sbjct 1192 CTTCTTGGATTTTGTAATGAAGGAGATGAAGAGGTTCTTGTTTACGAGTTTGTCCCCAAT 1251
Query 1255 TCAAGTCTTGATCACTTTATCTTTGACGAAGACAAACGTTGGCTTCTTACATGGGATGTG 1314
|| || || || ||||| || ||||| ||||| || |||| ||| || || ||||| ||
Sbjct 1252 TCTAGCCTCGACCACTTCATATTTGATGAAGAGAAGCGTTTGCTACTAACGTGGGACATG 1311
Query 1315 AGGTACAGAATCATAGAAGGAGTTGCAAGAGGACTTCTTTATCTCCATGAAGATTCTCAG 1374
|||| |||||| |||||||| ||||| |||| ||| ||||| | || ||||||||||||
Sbjct 1312 AGGTCCAGAATTATAGAAGGCGTTGCGCGAGGTCTTGTTTATTTACACGAAGATTCTCAG 1371
Query 1375 TTGAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAAC 1434
| |||||||||||| |||| |||||||||||||||||||||||||| || | ||||||
Sbjct 1372 CTAAGGATTATTCACCGAGACTTGAAGGCAAGCAATATCCTTTTAGATGCATATATGAAC 1431
Query 1435 CCTAAAGTTGCAGACTTTGGGATGGCGAGGTTGTTTAACATGGATGAGACTCGAGGAGAG 1494
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| || |
Sbjct 1432 CCTAAAGTTGCAGACTTTGGGATGGCGAGGTTGTTCAACATGGACCAGACTAGAGCAGTG 1491
Query 1495 ACAAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGTGAG-A-CATGGAC 1552
||||| | |||||||||||||| || ||||||||||| |||||||| || | || | ||
Sbjct 1492 ACAAGAAAAGTAGTTGGAACCTTTGGCTATATGGCTCCTGAGTACGTTAGGAACA-GAAC 1550
Query 1553 AATTCTCAG-CTAA-ATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGGAGATGATAAG 1610
| || |||| | || | | || || || || ||||| || ||||| | ||||||||||
Sbjct 1551 ATTT-TCAGTC-AAGA-CAGACGTATACAGTTTCGGAGTCGTGCTTCTCGAGATGATAAC 1607
Query 1611 TGGT-GaaaaaaaTAAGAACT-TT--GAAACAGAAGGACTTCCTGCTTTTGCATGGAAGA 1666
|||| ||| || ||||||| || ||| | ||| || ||||| | ||||||||||
Sbjct 1608 TGGTCGAAGTAAC-AAGAACTATTTCGAAGCCCTAGGGCTCCCTGCATATGCATGGAAGT 1666
Query 1667 GATGGATAGAAGGAGAG-CTTGAGAGTATAATCGATCCT-TACTTAA-ACGAGAATCC-A 1722
| ||| | | || ||| | | ||| || ||||||| | |||| | | ||| || |
Sbjct 1667 GTTGGGTTGCGGGCGAGGCA-GCGAGCATCATCGATCATGTACTCAGTAGGAG---CCGA 1722
Query 1723 AGAAACGAGATCATAA-AGTTGATTCAGATTGGTTTGTTGTGTGTTCAAGAGAATGCAGC 1781
|||||||| ||||| | | || || || |||||||||||||||||||||||||||| ||
Sbjct 1723 AGAAACGAAATCATGAGA-TTCATCCACATTGGTTTGTTGTGTGTTCAAGAGAATGTTGC 1781
Query 1782 AAAGAGACCAACCATGA 1798
||| |||||||||||||
Sbjct 1782 AAAAAGACCAACCATGA 1798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74314067995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5