BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04500.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895521 jgi|Araly1|895521|Al_scaffold_0006_3517 2959 0.0
Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516 765 0.0
Ahg943226 jgi|Araly1|943226|scaffold_603770.1 634 0.0
Ahg913379 jgi|Araly1|913379|Al_scaffold_0001_3633 606 2e-172
Ahg895523 jgi|Araly1|895523|Al_scaffold_0006_3519 584 8e-166
Ahg490098 jgi|Araly1|490098|fgenesh2_kg.6__3232__AT4G04510.1 555 6e-157
> Ahg895521 jgi|Araly1|895521|Al_scaffold_0006_3517
Length=1944
Score = 2959 bits (1602), Expect = 0.0
Identities = 1824/1929 (95%), Gaps = 23/1929 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAAGAGTTGTGTTGTGACTAGTTCCTTCTCGCTTCTCCTTCTCTTCCTTCAAACC 60
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 ATGGGAAAGAGTGGTGTTGTGACTAGTTCCCTCTCGCTTCTCCTTTTCTTCCTTCAAACC 60
Query 61 CTAAAATATGTTCATGCCGGTTTCATTTGCTACGGCGACTTTTTCAATGTTAACTACGGC 120
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 61 CTAAAATATGTTCATGCCGGTTCCATCTGCTACGGCGACTTTTTTAATGTTAACTACGGC 120
Query 121 GTCAGTCG-AACGTATCTCTTCTCTTCTCTTCCTTCTAACGTCGTTTCTAACGGCGGTTT 179
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTCAGTCGAAAC-TATCTCTTCTCTTCTCTTCCTTCTAACGTCGTTGATAACGGCGGTTT 179
Query 180 CTACAACGCATCGTTTGGCAGAGATTCCAAAAACAACAGAGTCCACGTTGTTGCCTTATG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTACAACGCATCGTTTGGCAGAGATTCCAAAAACAACAGAGTCCACGTTGTTGCCTTATG 239
Query 240 CAGACGAGGCTACGAGAAGCAAGCTTGTAAGACATGTCTCGAACATGTGATTGAAGACAC 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGACGAGGCTACGAGGAGCAAGCTTGTAAGACATGTCTCGAACATGTGATTGAAGACAC 299
Query 300 AAAATCCAAGTGTCCTCGCCAAAAAGAGTCTTTCTCGTGGGTCACTGATGAATTCGACGA 359
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 AAAAGCCAAGTGTCCTCGCCAAAAAGAGTCATTCTCGTGGGTCACTGATGAATTCGACGA 359
Query 360 CGTTTCTTGCTCTCTACGTTACACCAACCACTCAACTCTTGGCAAACTCGAGCTCTTACC 419
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 360 CGTTTCTTGCTCTCTACGTTACACCAACCACTCAACTCTTGGCAAACTCAATCTCTCACC 419
Query 420 AAATACTATTAACCCTAACCCTAACAGTATAGATTCCAAATTCAACAACATGGCCATGTT 479
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 420 AAGTACTATTAACCCTAACCCAAACAGTATAGATTCCAAATTCAACAACATGACCATGTT 479
Query 480 CAGCCAAGAATGGATTGCAATGGTTAACCGGACACTCGAGGCTGCTTCCACCGCTGAGAA 539
||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||
Sbjct 480 CAGCCAAGAATGGATTGCAATGGTTAACCGGACGCTCGAGGTTGCTTCTACCGTTGAGAC 539
Query 540 TTCCTCAGTCCTTAAGTACTACAGCGCAACAAGAACAGAGTTCACACAAATTTCAGATGT 599
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 540 TTCCTCAGTCCTTAAGTACTATAGTGCCACAAGAACAGAGTTCACACAAATTTCAGATGT 599
Query 600 TTACGCGTTGATGCAGTGCGTGCCTGATCTATCGCCAGGCAACTGCAAGAGATGTCTTAG 659
||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 TTATGCGTTGATGCAATGCGTGCCTGATTTATCGCCAGGCAACTGCAAGAGATGTCTTAG 659
Query 660 AGAGTGTGTGAATGACTTTCAGAAGCAGTTTTGGGGAAGACAAGGAGGTGGGGTTAGTCG 719
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 660 AGAGTGTGTGAATGACTTTCAGAAGCAGTATTGGGGAAGACAAGGAGGTGGGATTAGCCG 719
Query 720 GCCTAGCTGTTATTTCCGGTGGGATCTTTATCCGTACTACAGAGCTTTTGACAATGTTGT 779
||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||
Sbjct 720 GCCTAGCTGTTATTTCCGGTGGGATCTTTATCCTTTCTATAGAGCTTTTGAAAATGTTAC 779
Query 780 AAGAGTTCCTGCTCCTCCTCCTCAAGCTTCTTCTACTATTATCGATTACGGGAGAGACGA 839
|||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
Sbjct 780 GAGAGTTCCTGCTCCTCCTCCACAAGCTTCTTCGACTATTCTCGATTACGGGAGAGACAA 839
Query 840 GAAAAGTTTTCAAGGAAGCAACATAGCAATTATTGTGGTCCCTTCAGTCATCAATCTCAT 899
| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 840 GCAAAGTTTTCAAGGAAGCAACATAGCAATTATTGTGGTGCCTACAGTCATCAATCTCTT 899
Query 900 CATATTTGTGGTTCTAATATTCTCTTGG-A-AG-AGAAAG-CAGTCACACACCATAATCA 955
||||||||||||||||||||| |||||| | || |||||| || ||||||||| |||||
Sbjct 900 CATATTTGTGGTTCTAATATTTTCTTGGAAGAGAAGAAAGCCA-TCACACACCGGAATCA 958
Query 956 ATGATGTTTTTGATTCAAATAATGGTCAATCTATGTTACGTTTTGATCTTCGAATGATTG 1015
|||| | | || | ||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGA-G-----G-CTC--TTGATGGTCAATCTATGTTACGTTTTGATCTTCGAATGATTC 1009
Query 1016 TAACTGCAACCAATAACTTCTCTCTTGAAAATAAGCTTGGCCAAGGTGGATTTGGATCTG 1075
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1010 TAACTGCAACCAATAACTTCTCTCTAGAAAATAAGCTTGGCCAAGGTGGATTTGGATCTG 1069
Query 1076 TCTACAAGGGAATATTACCAAGCGGGCAAGAGATAGCGGTAAAGAGATTAAGAAAAGGTT 1135
||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1070 TCTACAAGGGAATATTACCGAGCGGACAAGAGATAGCGGTAAAGAGATTAACAAAAGGTT 1129
Query 1136 CAGGACAAGGAGGTATGGAGTTCAAGAACGAGGTCTTACTCTTGACAAGACTCCAACATA 1195
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CAGGGCAAGGAGGTATGGAGTTCAAGAACGAGGTCTTACTCTTGACAAGACTCCAACATA 1189
Query 1196 GGAATCTGGTTAAGCTTCTTGGGTTTTGTAATGAAAAAGATGAAGAGATTCTTGTCTACG 1255
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1190 GGAATCTGGTTAAGCTTCTTGGGTTTTGTAATGAAAAAGATGAAGAAATTCTTGTCTACG 1249
Query 1256 AGTTTGTCCCCAATTCAAGCCTTGACCACTTCATATTCGATGAAGAAAAACGCCGAG-TT 1314
| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1250 AATTCGTCCCTAATTCAAGCCTCGACCACTTCATATTCGATGAAGAAAAACGCCG-GCTT 1308
Query 1315 CTGACATGGGATGTGAGGTATACAATCATAGAAGGAGTTGCAAGAGGGCTTCTTTATCTC 1374
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1309 CTGACATGGGATGTGAGGTACAGAATCATAGAAGGAGTTGCAAGAGGGCTTCTTTATCTC 1368
Query 1375 CATGAAGATTCTCAGTTGAGGATTATACACAGAGATTTGAAGGCAAGCAATATCCTTTTA 1434
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1369 CATGAAGATTCTCAGTTGAGGATTATTCACAGAGATTTGAAGGCAAGCAATATCCTGTTA 1428
Query 1435 GACGCGGAGATGAACCCTAAGGTTGCAGATTTTGGGATGGCAAGGCTGTTCGATATGGAC 1494
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1429 GACGCGGAGATGAACCCTAAGGTTGCAGACTTTGGGATGGCAAGGCTGTTCGATATGGAC 1488
Query 1495 GAGACTCGAGGACAGACAAGCAGAGTAGTTGGAACATATGGATATATGGCTCCAGAATAC 1554
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1489 GAGACTCGAGGACAGACAAGCAGAGTGGTTGGAACATATGGATATATGGCTCCAGAATAC 1548
Query 1555 GCGACATACGGACAATTCTC-GACAAAATCTGATGTTTATAGCTTTGGTGTCATGCTTCT 1613
|||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1549 GCGACATATGGACAATTCTCAG-CTAAATCTGATGTTTATAGCTTTGGTGTCATGCTTCT 1607
Query 1614 AGAGATGATAAGTGGTaaaagcaacaaaaagttggaaaaagaagaagaggaagaagaaga 1673
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1608 AGAGATGATAAGTGGTAAAAGCAATAAAAATTTGGAAAAAGAAGAAGAGGAAGAAGAAGA 1667
Query 1674 agaGCTTCCAGCTTTTGTGTGGAAGAGGTGGATTGAAGGAAGATTTGCAGAGATCATTGA 1733
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1668 -G--CTTCCAGCTTTTGTGTGGAAGAGGTGGCTTGAAGGAAGATTTGCAGAGATCATTGA 1724
Query 1734 TCCTTTGGCTGCTCCGAGTAACAATATCTCAATAAACGAAGTAATGAAGCTCATTCACAT 1793
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 1725 TCCTTTGGCTGCTCCGAGTAACAATATCTCAATGAACCAAGTAATGAAGCTCATCCACAT 1784
Query 1794 AGGTTTGTTGTGTGTTCAAGAGGATATTTCCAAAAGACCTAGCATTAATTCAATCCTCTT 1853
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1785 AGGTTTGTTGTGTGTTCAAGAAAATGTTTCCAAAAGACCTAGCATTAATTCAATCCTCTT 1844
Query 1854 TTGGCTTGAGAGACACGCTACTATCACAATGCCTGTGCCCACGCCTGTTGCTTATCTTAC 1913
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1845 TTGGCTTGAAAGACACGCTACTACCACAATGCCTGTGCCCACGCCTGTTGCTTATCTTAC 1904
Query 1914 GCGACCATC 1922
|||||||||
Sbjct 1905 GCGACCATC 1913
> Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516
Length=1977
Score = 765 bits (414), Expect = 0.0
Identities = 601/690 (87%), Gaps = 18/690 (3%)
Strand=Plus/Plus
Query 977 ATGGTCAATCTATGTTACGTTTTGATCTTCGAATGAT-TGTAACTGCAACCAATAACTTC 1035
|||||||||||| | || | ||||||||| | ||||| | ||| ||||||| || | |||
Sbjct 962 ATGGTCAATCTACGCTAAGATTTGATCTTGGCATGATCT-TAATTGCAACCGATGAGTTC 1020
Query 1036 TCTCTTGAAAATAAGCTTGGCCAAGGTGGATTTGGATCTGTCTACAAGGGAATATTACCA 1095
|| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 TCCCCTGAAAATAAGCTTGGACAAGGTGGATTTGGATCTGTCTACAAGGGGATATTACCG 1080
Query 1096 AGCGGGCAAGAGATAGCGGTAAAGAGATTAAG-AAAAGGTTCAGGACAAGGAGGTA-TGG 1153
||||||||||||||||||||||||||||| || | |||||||||||||||| | | | |
Sbjct 1081 AGCGGGCAAGAGATAGCGGTAAAGAGATT-AGCTAGAGGTTCAGGACAAGGA-GAACTAG 1138
Query 1154 AGTTCAAGAACGAGGTCTTACTCTTGACAAGACTCCAACATAGGAATCTGGTTAAGCTTC 1213
|||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1139 AGTTAAAGAATGAAGTCTTACTTTTGACAAGACTCCAACATAGGAATCTAGTTAAGCTTC 1198
Query 1214 TTGGGTTTTGTAATGAA-AAAGATGAAGAGATTCTTGTCTACGAGTTTGTCCCCAATTCA 1272
|||| || ||||||||| || | || ||||||||||| |||||| ||| |||||||||
Sbjct 1199 TTGGATTCTGTAATGAAGGAA-ACGAGGAGATTCTTGTTTACGAGCATGTTCCCAATTCA 1257
Query 1273 AGCCTTGACCACTTCATATTCGATGAAGAAAAACGCCGAG-TTCTGACATGGGATGTGAG 1331
|| ||||| ||||| || ||||||||||| || || | | |||| ||||||||||||||
Sbjct 1258 AGTCTTGATCACTTTATCTTCGATGAAGATAAGCGATG-GCTTCTTACATGGGATGTGAG 1316
Query 1332 GTATACAATCATAGAAGGAGTTGCAAGAGGGCTTCTTTATCTCCATGAAGATTCTCAGTT 1391
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTACAGAATCATAGAAGGAGTTGCAAGAGGGCTTCTTTATCTCCATGAAGATTCTCAGTT 1376
Query 1392 GAGGATTATACACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAACCC 1451
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAGGATTATTCACAGAGACTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAACCC 1436
Query 1452 TAAGGTTGCAGATTTTGGGATGGCAAGGCTGTTCGATATGGACGAGACTCGAGGACAGAC 1511
||| |||||||| ||||||||||| ||| |||| | ||||| |||||||||||| ||||
Sbjct 1437 TAAAGTTGCAGACTTTGGGATGGCGAGGTTGTTTAACATGGATGAGACTCGAGGAGAGAC 1496
Query 1512 AAGCAGAGTAGTTGGAACATATGGATATATGGCTCCAGAATACGC--GACATACGGACAA 1569
|||||||||||||||||| || |||||||||||||| || |||| ||||| ||||||
Sbjct 1497 AAGCAGAGTAGTTGGAACCTACGGATATATGGCTCCGGAGTACGTAAGACAT--GGACAA 1554
Query 1570 TTCTC-GACAAAATCTGATGTTTATAGCTTTGGTGTCATGCTTCTAGAGATGATAAGTGG 1628
||||| | | |||||||||||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 1555 TTCTCAG-CTAAATCTGATGTTTATAGCTTCGGTGTTATGCTTTTGGAGATGATAAGTGG 1613
Query 1629 T-aaaagcaacaaaaagttggaaaaagaag 1657
| |||| || || || || |||| |||||
Sbjct 1614 TGAAAAA-AATAAGAACTTTGAAACAGAAG 1642
> Ahg943226 jgi|Araly1|943226|scaffold_603770.1
Length=1930
Score = 634 bits (343), Expect = 0.0
Identities = 573/680 (84%), Gaps = 32/680 (5%)
Strand=Plus/Plus
Query 977 ATGGTCAA-TCTATGTTACGTTTTGATCTTCGAATGAT-TGTAACT-GCAACCAATAACT 1033
|||||||| || |||||||| ||||||||| | ||||| | ||| | |||||| || |||
Sbjct 931 ATGGTCAATTC-ATGTTACGGTTTGATCTTGGTATGATCT-TAA-TGGCAACCGATGACT 987
Query 1034 TCTC-TCTTGAAAATAAGCTTGGCCAAGGTGGATTTGGAT-CTGTCTACAAGGGAATATT 1091
|||| || |||||||| ||||||||||||||||||||| | | ||||| ||||| | |||
Sbjct 988 TCTCTTC-TGAAAATACGCTTGGCCAAGGTGGATTTGG-TACGGTCTATAAGGGGACATT 1045
Query 1092 ACCAAGCGGGCAAG-AGATAGCGGTAAAGAGATTAAGAAAAGGTTCAGGACAAGGAGGTA 1150
|||| |||||||| || ||||||| |||||| ||| |||||| ||||||||||||| ||
Sbjct 1046 CCCAAACGGGCAAGAAG-TAGCGGTCAAGAGACTAACAAAAGGATCAGGACAAGGAGATA 1104
Query 1151 TGGAGTTCAAGAACGAGGTCTT-ACTCTTGACAAGACTCCAACATAGGAATCTGGTTAAG 1209
||||||| ||||| ||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 1105 TGGAGTTTAAGAATGAGGT-TTCACTCTTGACAAGACTCCAACATAGGAATCTTGTTAAG 1163
Query 1210 CTTCTTGGGTTTTGTAATGAAAAAGATGAAGAGATTCTTGTCTACGAGTTTGTCCCCAAT 1269
|||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1164 CTTCATGGGTTCTGTAATGAAGGAGATGAAGAGATTCTTGTCTACGAGTTTGTCCCCAAC 1223
Query 1270 TCAAGCCTTGACCACTTCATATTCGATGAAGAAAAACGC-CGAGTTCTGACATGGGATGT 1328
||||| ||||| ||||| || || |||||||| || || | |||| |||||||| ||
Sbjct 1224 TCAAGTCTTGATCACTTTATCTTTGATGAAGACAAGCGTTCTC-TTCTTACATGGGAGGT 1282
Query 1329 GAGGTAT-ACAATCATAGAAGG-AGTTGC-AAGAGGGCTTCTTTATCTCCATGAAGATTC 1385
||||| | | ||| |||||||| | |||| || ||| ||||| |||||||||||||||||
Sbjct 1283 GAGGT-TCAGAATTATAGAAGGCA-TTGCTAA-AGGTCTTCTCTATCTCCATGAAGATTC 1339
Query 1386 TCAGTTGAGGATTATACACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGAT 1445
|||| ||| |||||| || ||||| |||||||||||||| || ||||||||||| |||||
Sbjct 1340 TCAGATGAAGATTATTCATAGAGACTTGAAGGCAAGCAACATACTTTTAGACGCAGAGAT 1399
Query 1446 GAACCCTAAGGTTGCAGATTTTGGGA-TGGCAAGGCTGTTCGATATGGACGAGACTCGAG 1504
||||||||| ||||||||||| |||| || | ||||||||||| | || ||||||||||
Sbjct 1400 GAACCCTAAAGTTGCAGATTTCGGGACTG-CTAGGCTGTTCGACACCGATGAGACTCGAG 1458
Query 1505 --GACAGACAAGCAGAGTAGTTGGAACATATGGATATATGGCTCCAGAATA-C-GCGACA 1560
|| | ||||| ||| ||| |||||| |||||||||||||| ||||| | | | ||
Sbjct 1459 CTGA-A-ACAAGAAGAATAGCTGGAACCCGCGGATATATGGCTCCCGAATATCTGAGTCA 1516
Query 1561 TACGGACAATTCTCGACAAAATCTGATGTTTATAGCTTTGGTGTCATGCTTCTAGAGATG 1620
||| ||| ||||| | |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1517 --CGGGCAAATCTCGGCTAAATCTGACGTTTATAGCTTTGGTGTTATGCTTCTAGAGATG 1574
Query 1621 ATAAGTGGTaaaagcaacaa 1640
||||||||| ||| |||||
Sbjct 1575 ATAAGTGGTGGAAGAAACAA 1594
> Ahg913379 jgi|Araly1|913379|Al_scaffold_0001_3633
Length=1965
Score = 606 bits (328), Expect = 2e-172
Identities = 568/680 (84%), Gaps = 32/680 (5%)
Strand=Plus/Plus
Query 977 ATGGTCAATCTATGTTACGTTTTGATCTTCGAATGATTGTAACT-GCAACCAATAACTTC 1035
|||| |||| ||||||||| ||||||||| | |||| | | | | ||||| ||| ||||
Sbjct 986 ATGGACAATTTATGTTACGGTTTGATCTTGGTATGA-TCTTAGTGGCAACTAATGACTTT 1044
Query 1036 TC-TCTTGAAAATAAGCTTGGCCAAGGTGGATTTGGAT-CTGTCTACAAGGGAATATTAC 1093
|| || ||| |||| ||||||||| ||||||||||| | ||||||| ||||| | |||||
Sbjct 1045 TCGTC-TGAGAATACGCTTGGCCAGGGTGGATTTGG-TACTGTCTATAAGGGGACATTAC 1102
Query 1094 CAAGCGGGCAAGAGATAGCGGTAAAGAGATTAAGAAAAGGTTCAGGACAAGGAGGTATGG 1153
|| ||||||||||||||| || |||||| ||| || |||||| || ||||||| |||||
Sbjct 1103 TAAACGGGCAAGAGATAGCCGTGAAGAGACTAACAAGAGGTTCGGGGCAAGGAGATATGG 1162
Query 1154 AGTTCAAGAACGAGGTCTTACTC--TTGACAAGACTCCAACATAGGAATCTGGTTAAGCT 1211
|||| ||||| ||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 1163 AGTTTAAGAATGAGGT-TT-CTCTATTGACAAGACTCCAACATAGGAATCTGGTTAAGCT 1220
Query 1212 TCTTGGGTTTTGTAATGAAAAAGATGAAGAGATTCTTGTCTACGAGTTTGTCCCCAATTC 1271
||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1221 TCTTGGGTTCTGTAATGAAGGAGATGAAGAGATTCTTGTTTACGAGTTTGTCCCCAATTC 1280
Query 1272 AAGCCTTGACCACTTCATATTCGATGAAGAAAAACGC-CGAGTTCTGACATGGGATG-TG 1329
||| ||||| ||||| || ||||||||||| || || || |||| |||||||| | ||
Sbjct 1281 AAGTCTTGATCACTTTATCTTCGATGAAGAGAAGCGTTCGC-TTCTTACATGGGA-GCTG 1338
Query 1330 AGGTATACAATCATAGAAGG-AGTTGCAAGAGGGCTTCTTTATCTCCATGAAGATTCTCA 1388
|| | | ||| |||||||| | |||| |||| ||||||||||||||||||||||||||
Sbjct 1339 AGATGCAGAATTATAGAAGGCA-TTGCTCGAGGTCTTCTTTATCTCCATGAAGATTCTCA 1397
Query 1389 GTTGAGGATTATACACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAA 1448
| ||| |||||| ||| |||| |||||||||||||| || ||||||||||| ||||||||
Sbjct 1398 GCTGAAGATTATTCACCGAGACTTGAAGGCAAGCAACATTCTTTTAGACGCTGAGATGAA 1457
Query 1449 CCCTAAGGTTGCAGATTTTGGGATGGCAAGGCTGTTCGATA--TGGACGAGACTCGAG-- 1504
|||||||||||| || ||||||| || || ||||||| | || | ||||||||||
Sbjct 1458 CCCTAAGGTTGCCGACTTTGGGACAGCGAGATTGTTCGA-AGCTG-ATGAGACTCGAGCT 1515
Query 1505 GACAGACAAG-CAGAGTAGTTGGAACATATGGATATATGGCTCCAGAATACGC-GACAT- 1561
|| | ||||| | || ||| |||||| ||| ||||||||||| |||||| | || ||
Sbjct 1516 GA-A-ACAAGAC-GAATAGCTGGAACCCGTGGGTATATGGCTCCCGAATAC-CTGA-ATC 1570
Query 1562 ACGGACAATTCTC-GACAAAATCTGATGTTTATAGCTTTGGTGTCATGCTTCTAGAGATG 1620
|||||||| |||| | | |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1571 ACGGACAAATCTCAG-CTAAATCTGACGTTTATAGCTTTGGTGTTATGCTTCTAGAGATA 1629
Query 1621 ATAAGTGGTaaaagcaacaa 1640
||||||||| |||| |||||
Sbjct 1630 ATAAGTGGTGAAAGAAACAA 1649
> Ahg895523 jgi|Araly1|895523|Al_scaffold_0006_3519
Length=1980
Score = 584 bits (316), Expect = 8e-166
Identities = 562/678 (83%), Gaps = 28/678 (4%)
Strand=Plus/Plus
Query 977 ATGGTCAATCTATGTTACGTTTTGATCTTCGAATGAT-TGTAACT-GCAACCAATAACTT 1034
||||||||| ||||||| | |||||| || | ||||| | ||| | ||||| ||| ||||
Sbjct 1001 ATGGTCAATTTATGTTAAGGTTTGATATTGGTATGATCT-TAA-TGGCAACTAATGACTT 1058
Query 1035 CTC-TCTTGAAAATAAGCTTGGCCAAGGTGGATTTGGAT-CTGTCTACAA-GGGAATATT 1091
||| || |||||| | ||||||||||||||||||||| | | ||||| || ||||| |||
Sbjct 1059 CTCGTC-TGAAAACACGCTTGGCCAAGGTGGATTTGG-TACGGTCTATAAGGGGAA-ATT 1115
Query 1092 ACCAAGCGGGCAAGAGATAGCGGTAAAGAGATTAAGAAAAGGTTCAGGACAAGGAGGTAT 1151
|| || |||||||||||||||||| |||||| ||| |||||||||||||||||||| |||
Sbjct 1116 ACTAAACGGGCAAGAGATAGCGGTGAAGAGACTAACAAAAGGTTCAGGACAAGGAGATAT 1175
Query 1152 GGAGTTCAAGAACGAGGTCTT-ACTCTTGACAAGACTCCAACATAGGAATCTGGTTAAGC 1210
||||||||||| ||||| || ||| |||||||||||||||||||||||||| |||||||
Sbjct 1176 AGAGTTCAAGAATGAGGT-TTCACTATTGACAAGACTCCAACATAGGAATCTAGTTAAGC 1234
Query 1211 TTCTTGGGTTTTGTAATGAAAAAGATGAAGAGATTCTTGTCTACGAGTTTGTCCCCAATT 1270
|||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 1235 TTCTTGGGTTCTGTAATGACGGAGATGAACAGATTCTTGTCTACGAGTTTGTCCCCAACT 1294
Query 1271 CAAGCCTTGACCACTTCATATTCGATGAAGAAAAACGC-CGAGTTCTGACATGGGATG-T 1328
|||| ||||| ||||| || ||||||||||| || || | | |||| |||||||| | |
Sbjct 1295 CAAGTCTTGATCACTTTATCTTCGATGAAGAGAAGCGTTC-ACTTCTTACATGGGA-GAT 1352
Query 1329 GAGGTATACAATCATAGAAGG-AGTTGCAAGAGGGCTTCTTTATCTCCATGAAGATTCTC 1387
||| | | ||| |||||||| | |||| |||| ||||||||||| |||||||||||||
Sbjct 1353 GAGATGCAGAATTATAGAAGGCA-TTGCTCGAGGTCTTCTTTATCTTCATGAAGATTCTC 1411
Query 1388 AGTTGAGGATTATACACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGA 1447
|| | | |||||| ||| |||| ||||||||||| || ||||||||||| || |||||||
Sbjct 1412 AGCTAAAGATTATTCACCGAGACTTGAAGGCAAGTAACATCCTTTTAGATGCAGAGATGA 1471
Query 1448 ACCCTAAGGTTGCAGATTTTGGGATGGCAAGGCTGTTCGA-TATGGACGAGACTCGAG-- 1504
| ||||| ||| |||||||||||| || ||| ||||||| | | | ||||| ||||
Sbjct 1472 ATCCTAAAGTTTCAGATTTTGGGACAGCGAGGTTGTTCGACTCCG-ATGAGACCCGAGCT 1530
Query 1505 GACAGACAAGCAGAGTAGTTGGAACATATGGATATATGGCTCCAGAATACGCGACAT-AC 1563
|| | |||| ||| ||| |||||| ||||||||||||||| || ||| || || |
Sbjct 1531 GA-A-ACAAAAAGAATAGCTGGAACCCGTGGATATATGGCTCCCGAGTACTTGA-ATCAT 1587
Query 1564 GGACAATTCTC-GACAAAATCTGATGTTTATAGCTTTGGTGTCATGCTTCTAGAGATGAT 1622
|| ||| |||| | | |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1588 GGGCAAATCTCAG-CTAAATCTGACGTTTATAGCTTCGGTGTTATGCTTCTAGAGATGAT 1646
Query 1623 AAGTGGTaaaagcaacaa 1640
|| |||| |||| |||||
Sbjct 1647 AAATGGTGAAAGAAACAA 1664
> Ahg490098 jgi|Araly1|490098|fgenesh2_kg.6__3232__AT4G04510.1
Length=1985
Score = 555 bits (300), Expect = 6e-157
Identities = 551/672 (82%), Gaps = 18/672 (3%)
Strand=Plus/Plus
Query 978 TGGTCAATCTATGTTACGTTTTGATCTTCGAATGATTGTAACT-GCAACCAATAACTTCT 1036
||||||||||| | |||| || ||| || | ||||| ||| | ||||| | | ||||
Sbjct 960 TGGTCAATCTACGCTACGGTTCGATTTTAGTATGATCCTAA-TCGCAACGGACGATTTCT 1018
Query 1037 C-TCTTGAAAATAAGCTTGGCCAAGGTGGATTTGGATCTGTCTACAAGGG-AATATTACC 1094
| | ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1019 CAT-TTGAAAATAAGATTGGCCAAGGTGGATTTGGATCTGTCTACAAGGGGAA-ATTACC 1076
Query 1095 AAGCGGGCAAGAGATAGCGGTAAAGAGATTAAGAAAAGGTTCAGGACAAGGAGGTATGGA 1154
| ||||||| |||||||||||||||||||| || ||| ||||||||||||| || ||
Sbjct 1077 GGGAGGGCAAGTGATAGCGGTAAAGAGATTAACAAGAGGCTCAGGACAAGGAGAAATAGA 1136
Query 1155 GTTCAAGAA-CGAGGTCTTACTCTTGACAAGACTCCAACATAGGAATCTGGTTAAGCTTC 1213
||| | ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1137 GTTTA-GAAACGAGGTCTTACTCTTGACAAGACTCCAGCATAGGAATCTAGTTAAGCTTC 1195
Query 1214 TTGGGTTTTGTAATGAAAAAGATGAAGAGATTCTTGTCTACGAGTTTGTCCCCAATTCAA 1273
|||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||| |
Sbjct 1196 TTGGATTTTGTAATGAAGGAGATGAAGAGGTTCTTGTTTACGAGTTTGTCCCCAATTCTA 1255
Query 1274 GCCTTGACCACTTCATATTCGATGAAGAAAAACGCCGAGTT-CTGACATGGGATGTGAGG 1332
|||| |||||||||||||| |||||||| || || | | || || ||||| |||||
Sbjct 1256 GCCTCGACCACTTCATATTTGATGAAGAGAAGCGTTT-GCTACTAACGTGGGACATGAGG 1314
Query 1333 TATACAATCATAGAAGGAGTTGCAAGAGGGCTTCTTTATCTCCATGAAGATTCTCAGTTG 1392
| | ||| |||||||| ||||| |||| ||| ||||| | || |||||||||||| |
Sbjct 1315 TCCAGAATTATAGAAGGCGTTGCGCGAGGTCTTGTTTATTTACACGAAGATTCTCAGCTA 1374
Query 1393 AGGATTATACACAGAGATTTGAAGGCAAGCAATATCCTTTTAGACGCGGAGATGAACCCT 1452
|||||||| ||| |||| |||||||||||||||||||||||||| || | |||||||||
Sbjct 1375 AGGATTATTCACCGAGACTTGAAGGCAAGCAATATCCTTTTAGATGCATATATGAACCCT 1434
Query 1453 AAGGTTGCAGATTTTGGGATGGCAAGGCTGTTCGATATGGACGAGACTCGAGGACAGACA 1512
|| |||||||| ||||||||||| ||| ||||| | |||||| ||||| ||| | ||||
Sbjct 1435 AAAGTTGCAGACTTTGGGATGGCGAGGTTGTTCAACATGGACCAGACTAGAGCAGTGACA 1494
Query 1513 AGCAGAGTAGTTGGAACATATGGATATATGGCTCCAGAATACGCGAC-ATACGGA-CAAT 1570
|| | |||||||||||| | ||| ||||||||||| || |||| | | || || || |
Sbjct 1495 AGAAAAGTAGTTGGAACCTTTGGCTATATGGCTCCTGAGTACGTTAGGA-ACAGAACATT 1553
Query 1571 TCTC-GACAAAATCTGATGTTTATAGCTTT-GGTGTCATGCTTCTAGAGATGATAAGTGG 1628
| || | ||| | | || || || || ||| || ||| ||||||| |||||||||| |||
Sbjct 1554 T-TCAGTCAAGA-CAGACGTATACAG-TTTCGGAGTCGTGCTTCTCGAGATGATAACTGG 1610
Query 1629 Taaaagcaacaa 1640
| ||| |||||
Sbjct 1611 TCGAAGTAACAA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5