BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04580.1
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352380 jgi|Araly1|352380|fgenesh1_pg.C_scaffold_6002973 545 9e-155
Ahg352378 jgi|Araly1|352378|fgenesh1_pg.C_scaffold_6002971 438 1e-122
Ahg352381 jgi|Araly1|352381|fgenesh1_pg.C_scaffold_6002974 141 5e-33
> Ahg352380 jgi|Araly1|352380|fgenesh1_pg.C_scaffold_6002973
Length=504
Score = 545 bits (295), Expect = 9e-155
Identities = 441/510 (86%), Gaps = 15/510 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGATCCGATGGTTAGATCTTACATTAGGTC-AGACAATCCGCGAATGCACTGGAC 59
|||| ||||| ||| |||||||||||||||||| | | || |||| | |||| |||||
Sbjct 1 ATGCGAGATCTGATCGTTAGATCTTACATTAGGCCAAAAC-TTCCGAGTATGCGTTGGAC 59
Query 60 CGACGATCTTGATATCCGTTTTATTCAAGTTATTGAAAAACTCGGTGGCG-AAGAGAGTG 118
||||||||| || ||||||||| |||||||| ||||| |||||||||| ||| |||||
Sbjct 60 CGACGATCTCGACATCCGTTTTGTTCAAGTTGTTGAATTCCTCGGTGGCGAAAG-GAGTG 118
Query 119 CAACTCCTAAGAGAATTTTGAGTCTTATGGGTGTGAGAGACCTCACAATATCACATGTCA 178
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 119 CAACTCCTAAGAAAATTTTGAGTCACATGGGTGTGAGAGACCTCACAATATCACATGTGA 178
Query 179 AAAGTCATCTCCAGATGTATAGGAACAAA-AAGAAAGAAGAATCTAGTAAAGAAATAAAA 237
|||| |||||||||||||||||||| ||| ||| ||| |||||||| ||||| || | |
Sbjct 179 AAAGCCATCTCCAGATGTATAGGAA-AAAGAAGGAAGCAGAATCTATTAAAGCAAGGAGA 237
Query 238 ATGATGCGGGAGATGACA-CAGAGGCAATCTCAGCAATATCTTCAAATCTATGAACGTGC 296
||||| | || |||| | | |||||||||||| ||||| ||||||||||||||||||||
Sbjct 238 ATGATACATGAAATGA-AGCGGAGGCAATCTCAACAATACCTTCAAATCTATGAACGTGC 296
Query 297 TACCCAATTTATCCAAAATCAACAAAGGCTACAACTGGATAATACTGAGAAGATAACCCC 356
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
Sbjct 297 TACCCAATTTATCCAAAATCATCAAAGGCTACAGTTGGATAATACTGAGAAGATAACATC 356
Query 357 AGT-TTTGGGATCAAGTAACAAGTCTCTAGATCAATCTTCAA-AGGTTGGACTAAATGAA 414
| | ||||||||| |||||||||||||| |||||||||||| || | ||| | ||||||
Sbjct 357 A-TCTTTGGGATCGAGTAACAAGTCTCTCTATCAATCTTCAAGAG-TGGGATTCAATGAA 414
Query 415 AACAGAGGCAATGATGTTGTTGTTG-T--TGGTGGTGCAACTGGTGAAGAAGAATTGTCC 471
||||||| ||||||||| ||||| | | |||||||| || ||||||||||| |||||||
Sbjct 415 AACAGAGACAATGATGTCGTTGTCGCTGGTGGTGGTGTAATTGGTGAAGAAGGATTGTCC 474
Query 472 CTTGAACTCACTCTTGGTCGCAAGTACTAA 501
||||||||||||||||||| ||||||||||
Sbjct 475 CTTGAACTCACTCTTGGTCACAAGTACTAA 504
> Ahg352378 jgi|Araly1|352378|fgenesh1_pg.C_scaffold_6002971
Length=513
Score = 438 bits (237), Expect = 1e-122
Identities = 429/516 (83%), Gaps = 36/516 (7%)
Strand=Plus/Plus
Query 10 CCGATGGTTAGATCTTACATTAGGTCAGACAA-T-CCGCGAATGCACTGGACCGACGATC 67
||||| ||||||||||||||||||||| | || | |||| |||| ||||| |||||||
Sbjct 10 CCGATCGTTAGATCTTACATTAGGTCA-A-AAGTGCCGCCTATGCGTTGGACAGACGATC 67
Query 68 TTGATATCCGTTTTATTCAAGTTATTGAAAAACTCGGTGGCG-AA-GAGAGTGCAACTCC 125
|||| ||| ||||| ||||||| ||||| ||| ||||||| || || || ||||||||
Sbjct 68 TTGACCTCCTTTTTACTCAAGTTGTTGAATTACTTGGTGGCGAAAGGA-AG-GCAACTCC 125
Query 126 TAAGAGAATTTTGAGTCT-TATGGGTGTGAGAGACCTCACAATATCACATGTCAAAAGTC 184
|||| |||||||| || ||||| ||||||| ||||||||||||||||||| ||||| |
Sbjct 126 TAAGCCAATTTTGA-ACTGTATGGATGTGAGAAACCTCACAATATCACATGTGAAAAGCC 184
Query 185 ATCTCCAGATGTATAGGAACAAA-AAGAAAGAAGAATCTAGT-AAAGAAATAAAAATGAT 242
||||||||||||||| ||| ||| ||||||||||||| || | ||||||| | ||||||
Sbjct 185 ATCTCCAGATGTATA-GAAAAAAGAAGAAAGAAGAATTTA-TAAAAGAAAGGAGAATGAT 242
Query 243 GCGGGAGATG-ACACAGAGGCAATCTCAG-CAATATCTTCAAATCTATGAA------C-- 292
||| || ||| || ||||||||||||| | ||||| ||||| ||||| ||| |
Sbjct 243 GCGAGAAATGAAC-CAGAGGCAATCTC-GACAATACCTTCAGATCTACGAACGTGCTCGA 300
Query 293 G-TGCTACCCAATTTATCCAAAATCAACAAAGGCTACAACTGGATAATACTGAGAAGATA 351
| ||||||||||||||| || ||||||||||| | |||| |||||| || ||||||||||
Sbjct 301 GATGCTACCCAATTTATGCAGAATCAACAAAGACCACAATTGGATATTATTGAGAAGATA 360
Query 352 ACCCCAGTTTTGGGATCAAGTAACAAGTCTCTAGATCAATCTT-CAA-AG-GTTGGACTA 408
|||||||||||||||||||||||||||| ||| |||||| || ||| || | | |||
Sbjct 361 ACCCCAGTTTTGGGATCAAGTAACAAGTTTCTCTATCAAT-TTGCAAGAGAGA-G-ACTT 417
Query 409 AATGAAAACAGAGGCAATGATGTTGTTGTTGTTGGTGGT-G--CAACTGGTGAAGAAGAA 465
|||||||||||| ||||||||| ||||||| ||||||| | ||| |||||||||||||
Sbjct 418 AATGAAAACAGAAACAATGATGTCGTTGTTGCTGGTGGTAGTGCAATTGGTGAAGAAGAA 477
Query 466 TTGTCCCTTGAACTCACTCTTGGTCGCAAGTACTAA 501
|| || ||||||||||||||||||| ||||||||||
Sbjct 478 TTATCTCTTGAACTCACTCTTGGTCACAAGTACTAA 513
> Ahg352381 jgi|Araly1|352381|fgenesh1_pg.C_scaffold_6002974
Length=393
Score = 141 bits (76), Expect = 5e-33
Identities = 98/108 (91%), Gaps = 3/108 (3%)
Strand=Plus/Plus
Query 397 AAGGTTGGACTAAATGAAAACAGAGGCAATGATGTTGTTGTTGTTG--G-TGGTGCAACT 453
||||| ||||||||||||||||||| ||||||||||||||| |||| | || ||||| |
Sbjct 286 AAGGTGGGACTAAATGAAAACAGAGACAATGATGTTGTTGTGGTTGATGATGTTGCAATT 345
Query 454 GGTGAAGAAGAATTGTCCCTTGAACTCACTCTTGGTCGCAAGTACTAA 501
|||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 346 GGTGAAGAAGGATTGTCCTTTGAACTCACTCTTGGTCGCAAGTACTAA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18200215953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5