BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04610.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943230 jgi|Araly1|943230|scaffold_603774.1 2202 0.0
Ahg945948 jgi|Araly1|945948|scaffold_702177.1 1098 0.0
> Ahg943230 jgi|Araly1|943230|scaffold_603774.1
Length=1438
Score = 2202 bits (1192), Expect = 0.0
Identities = 1366/1448 (94%), Gaps = 20/1448 (1%)
Strand=Plus/Plus
Query 47 atCCAATTTTTGCTGTGAAGATGGCAATGTCTGTAAATGTTTCTTCTTCTTCGTCTTCTG 106
||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1 ATCGAATTTTTGCTGTGAAAATGGCAATGTCTGTGAATGTTTCTTCTTCTTCTTCTTCTG 60
Query 107 GGATCATAAA---------CTCTCGTTTCGGTGTTTCATTGGAGCCAAAAGTTTCGCAAA 157
|||||||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 61 GGATCATAAACTCTGGTTTCTCTCGTTCCGGTGCTTCATCGGAGCCAAAAGTTTCGCAAA 120
Query 158 TTGGTTCGTTGAGGTTATTGGATCGTGTTCATGTTGCTCCTGTGTCTCTGAATCTATCTG 217
| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 TCGGTTCGTTGCGGTTATTGGATCGTGTTCATGTTGCTCCGGTGTCTCTGAATCTATCTG 180
Query 218 GGAAGCGATCATCATCTGTTAAACCTTTAAACGCTGAACCAAAGACAAAGGATTCAATGA 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAAGCGATCATCATCTGTTAAACCTTTAAACGCTGAACCAAAGACAAAGGATTCAATGA 240
Query 278 TTCCTCTTGCGGCAACAATGGTAGCAGAAATTGCAGAGGAAGTTGAAGTGGTTGAGATTG 337
|||||||||| |||||||||||||||||||||||||||||||||||| | | || |||
Sbjct 241 TTCCTCTTGCTGCAACAATGGTAGCAGAAATTGCAGAGGAAGTTGAA---G-T-AG-TTG 294
Query 338 AGGATTTTGAAGAGCTTGCTAAGAAG-TTAGAGAATGCTTCACCTCTTGAGATTATGGAC 396
| || ||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 295 A-GA--TTGAAGAGCTTGCAAAGAAGCTT-GAGAATGCTTCACCTCTTGAGATTATGGAT 350
Query 397 AAAGCTCTTGAGAAATACGGGAACGATATCGCCATTGCATTTAGTGGTGCAGAAGATGTT 456
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 351 AAAGCTCTTGAGAAATACGGGAATGATATTGCTATTGCATTTAGTGGTGCAGAAGATGTT 410
Query 457 GCTCTTATTGAGTACGCTCATTTGACTGGGAGGCCATTTAGAGTATTTAGTTTGGATACA 516
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 411 GCTCTAATTGAGTATGCTCATTTGACTGGGAGACCATTTAGAGTATTTAGTTTGGATACA 470
Query 517 GGGAGGTTGAATCCTGAGACGTATCGGTTTTTCGATGCGGTGGAGAAGCACTATGGGATT 576
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 471 GGGAGGTTGAATCCCGAGACGTATCGGTTTTTTGATGCGGTGGAGAAACACTATGGGATT 530
Query 577 AGGATTGAGTATATGTTTCCTGATTCTGTTGAGGTTCAAGGTTTGGTTAGGAGCAAGGGA 636
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 531 AGAATTGAGTATATGTTTCCTGATTCTGTTGAGGTTCAAGGTTTAGTTAGGAGCAAGGGA 590
Query 637 TTGTTCTCTTTTTATGAGGATGGTCATCAGGAGTGTTGCCGTGTTCGAAAGGTGAGACCT 696
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TTGTTCTCTTTCTATGAGGATGGTCATCAGGAGTGTTGCCGTGTTCGAAAGGTGAGACCT 650
Query 697 TTGAGGCGTGCTCTCAAGGGTTTAAAGGCTTGGATTACTGGTCAGAGGAAAGATCAATCT 756
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 651 TTGAGGCGTGCTCTTAAGGGCTTAAAGGCTTGGATTACTGGTCAGAGGAAAGATCAGTCT 710
Query 757 CCGGGGACAAGGTCTGAGATTCCGGTTGTTCAGGTTGATCCGGTGTTTGAAGGTTTGGAT 816
|| || || ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 711 CCAGGAACGAGGTCTGAGATTCCGGTGGTTCAGGTTGATCCTGTGTTTGAAGGTTTGGAT 770
Query 817 GGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTTGAAGGGAATGATGTT 876
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 771 GGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTGGAAGGGAATGATGTT 830
Query 877 TGGAACTTCTTGAGGACTATGGATGTTCCGGTTAACACATTGCATGCGGCAGGGTATATA 936
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 831 TGGAACTTCTTGAGGACTATGGATGTTCCGGTTAACACATTGCACGCGGCAGGGTATATA 890
Query 937 TCGATTGGATGTGAGCCTTGCACGAAAGCGGTTTTACCGGGTCAGCACGAGAGAGAAGGG 996
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 891 TCGATTGGATGTGAGCCTTGCACGAAAGCGGTTTTACCGGGCCAGCACGAGAGGGAAGGG 950
Query 997 AGATGGTGGTGGGAAGATGCTAAAGCCAAGGAATGTGGACTTCACAAAGGGAATGTCAAA 1056
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 951 AGATGGTGGTGGGAAGATGCTAAAGCCAAGGAATGTGGGCTTCACAAAGGGAATGTCAAG 1010
Query 1057 GAAAACTCCGATGATGCTAAAGTGAACGGGGAATCGAAATCCGCTGTTGCAGATATCTTT 1116
|||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||
Sbjct 1011 GAAAACACCGCTGATGCTAACGTAAACGGGGAATCCAAAAACGCTGTTGCAGATATCTTT 1070
Query 1117 AAGAGTGAGAATCTTGTGACTTTGAGCAGGCAGGGGATTGAGAATTTGATGAAGTTGGAG 1176
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1071 AAGAGTGAGAATCTTGTAACTTTGAGCAGGCAAGGGATTGAGAATTTGATGAAGTTGGAG 1130
Query 1177 AACCGTAAAGAGCCTTGGATCGTCGTGCTTTATGCTCCGTGGTGCCCCTTTTGTCAAGCC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AACCGTAAAGAGCCTTGGATCGTCGTGCTTTATGCTCCGTGGTGCCCCTTTTGTCAAGCC 1190
Query 1237 ATGGAAGCATCGTATGATGAACTGGCGGATAAATTGGCTGGAAGTGGGATTAAGGTTGCC 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ATGGAAGCATCGTATGATGAACTGGCGGATAAATTGGCTGGAAGTGGGATTAAGGTTGCA 1250
Query 1297 AAATTCAGAGCAGATGGTGACCAGAAGGAGTTTGCTAAGCAGGAATTGCAGCTCGGTAGC 1356
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1251 AAATTCAGAGCTGATGGTGACCAGAAGGATTTTGCTAAGCAAGAATTGCAGCTCGGTAGC 1310
Query 1357 TTCCCTACCATTCTGGTTTTCCCTAAGAACTCATCGAGACCGATCAAGTATCCGTCTGAG 1416
||||| ||||| || || ||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1311 TTCCCGACCATACTTGTCTTCCCCAAGAACTCTTCAAGACCGATCAAGTATCCGTCTGAG 1370
Query 1417 AAGAGAGATGTTGAGTCTTTGACTTCGTTCTTGAATCTTGTCCGATAAGTAAACCACAAA 1476
||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1371 AAGAGAGATGTCGATTCTTTGACTTCGTTCTTGAATCTTGTCCGATAAATAAACCACAAA 1430
Query 1477 ACCAGTCG 1484
||||||||
Sbjct 1431 ACCAGTCG 1438
> Ahg945948 jgi|Araly1|945948|scaffold_702177.1
Length=1417
Score = 1098 bits (594), Expect = 0.0
Identities = 967/1146 (84%), Gaps = 29/1146 (3%)
Strand=Plus/Plus
Query 335 TTGAGGATTTTGAAGAGCTTGCTAAGAAG-TTAGAGAATGCTTCACCTCTTGAGATTATG 393
|||| || ||||| || || || ||| || |||||||||||||| ||||||||||| |||
Sbjct 265 TTGAAGACTTTGAGGAACTAGCAAAG-AGATTAGAGAATGCTTCTCCTCTTGAGATCATG 323
Query 394 GACAAAGCTCTTGAGAAATACGGGAACGATATCGCCATTGCATTTAGTGGTGCAGAAGAT 453
|| |||||||||||||| | ||||| || || || ||||| |||||||| || ||||||
Sbjct 324 GATAAAGCTCTTGAGAAGTTTGGGAATGACATTGCAATTGCCTTTAGTGGAGCTGAAGAT 383
Query 454 GTTGCTCTTATTGAGTACGCTCATTTGACTGGGAGGCCATT-TAGAGTATTT-AGTTTGG 511
|||||||| |||||||| |||||||| ||||| || || || ||| || ||| |||||||
Sbjct 384 GTTGCTCTGATTGAGTATGCTCATTTAACTGGAAGACC-TTATAGGGT-TTTCAGTTTGG 441
Query 512 ATACAGGGAGGTTGAATCCTGAGACGTATC-GGTTTTTCGATGCGGTGGAGAAGCACTAT 570
|||||||||| |||||||| || || || | | | |||||| | |||||||| || ||
Sbjct 442 ATACAGGGAGATTGAATCCAGAAACATA-CAGACTCTTCGATACCGTGGAGAAACATTAC 500
Query 571 GGGATTAGGATTGAGTATATGTTTCCTGATTCTGTTGAGGTTCAAGGTTTGGTTAGGAGC 630
|| ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 501 GGTATTCGGATTGAGTATATGTTTCCTGATGCTGTTGAGGTTCAAGCCTTGGTTAGGAAC 560
Query 631 AAGGGATTGTTCTCTTTTTATGAGGATGGTCATCAGGAGTGTTGCCGTGTTCGAAAGGTG 690
||||| ||||||||||| ||||| |||||||| |||||||| |||||| || ||||||||
Sbjct 561 AAGGGTTTGTTCTCTTTCTATGAAGATGGTCACCAGGAGTGCTGCCGTATTAGAAAGGTG 620
Query 691 AGACCTTTGAGGCGTGCTCTCAAGGGTTTAAAG-GCTTGGATTACTGGTCAGAGGAAAGA 749
|||||||||||||||||| | ||||| || | | |||||||| |||||||||||||||||
Sbjct 621 AGACCTTTGAGGCGTGCTTTGAAGGGCTT-ACGTGCTTGGATCACTGGTCAGAGGAAAGA 679
Query 750 TCAATCTCCGGGGACAAGGTCTGAGATTCCGGTTGTTCAGGTTGATCCGGTGTTTGAAGG 809
|||||| || |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 680 TCAATCGCCTGGGACAAGATCGGAGATTCCGGTTGTTCAGGTTGATCCAGTGTTTGAAGG 739
Query 810 TTTGGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTTGAAGGGAA 869
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ATTAGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTTGAAGGGAA 799
Query 870 TGATGTTTGGAACTTCTTGAGGACTATGGATGTTCCGGTTAACACA-TTGCATGCGGCAG 928
|||||||||||| ||||||||||||||||||||||| || ||||| || ||||| || |
Sbjct 800 TGATGTTTGGAATTTCTTGAGGACTATGGATGTTCCTGTCAACACGCTT-CATGCTGCTG 858
Query 929 GGTATATATCGATTGGATGTGAGCCTTGCACGAAAGCGGTTTTACCGGGTCAGCACGAGA 988
| ||| | || || ||||||||||| || |||| ||| ||||| ||||||||||| ||||
Sbjct 859 GTTATGTTTCAATCGGATGTGAGCCATGTACGAGAGCAGTTTTGCCGGGTCAGCATGAGA 918
Query 989 GAGAAGGGAGATGGTGGTGGGAAGATGCTAAAGCCAAGGAATGTGGACTTCACAAAGGGA 1048
||||||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct 919 GAGAAGGGAGATGGTGGTGGGAAGATGCTAAGGCTAAAGAGTGTGGACTTCACAAAGGGA 978
Query 1049 ATGTCAAAGAAAACT-CCGATG-ATGCTAAAGTG--AACGGGGAATCGA-A-ATCCGCTG 1102
|| |||| || || | || ||| | | || || || | || || | |||| | |
Sbjct 979 ATATCAAGGAGAA-TACCAATGGAAACGCAACTGCTAATGTC-AA-CGGGACATCCACGG 1035
Query 1103 TTGCAGATATCTTT-AAGAGTGAGAATCTTGTGA-CTTTGAGCAGGCAGGGGATTGAGAA 1160
| || ||||| ||| || || |||||| |||||| ||| ||||||||| |||||||||||
Sbjct 1036 TGGCGGATAT-TTTCAACAGCGAGAATGTTGTGAACTT-GAGCAGGCAAGGGATTGAGAA 1093
Query 1161 TTTGATGAAGTTGGAGAACCGTAAAGAGCCTTGGATCGTCGTGCTTTATGCTCCGTGGTG 1220
|||||||||||| |||||||| |||||| |||||||||| ||||||||||| ||||||||
Sbjct 1094 TTTGATGAAGTTAGAGAACCGGAAAGAGGCTTGGATCGTTGTGCTTTATGCACCGTGGTG 1153
Query 1221 CCCCTTTTGTCAAGCCATGGAAGCATCGTATGATGAACTGGCGGATAAATT-GGCTGGAA 1279
||| |||||||| || |||||||| || | ||||||| |||| ||||| | ||| ||||
Sbjct 1154 CCCGTTTTGTCAGGCAATGGAAGCTTCATTTGATGAATTGGCAGATAAGCTCGGC-GGAA 1212
Query 1280 GTGG-GATTAAGGTTGCCAAATTCAGAGCAGATGGTGACCAGAAGGAGTTTGCTAAGCAG 1338
||| | | |||||||| || || ||||| ||||||||||||||||| ||||| || ||
Sbjct 1213 ATGGCG-TGAAGGTTGCTAAGTTTAGAGCTGATGGTGACCAGAAGGACTTTGCCAAAAAG 1271
Query 1339 GAATTGCAGCTCGGTAGCTTCCCTACCATTCTGGTTTTCCCTAAGAACTCATCGAGACCG 1398
|| |||||||| || ||||| || || || || || ||||| |||||||| ||||||||
Sbjct 1272 GAGTTGCAGCTTGGAAGCTTTCCAACAATACTTGTGTTCCCAAAGAACTCTTCGAGACCA 1331
Query 1399 ATCAAGTATCCGTCTGAGAAGAGAGATGTTGAGTCTTTGACTTCGTTCTTGAATCTTGTC 1458
||||||||||| || ||||| ||||||||||| || ||||| || ||||||||||||||
Sbjct 1332 ATCAAGTATCCATCAGAGAAAAGAGATGTTGATTCCTTGACATCTTTCTTGAATCTTGTT 1391
Query 1459 CGATAA 1464
|| |||
Sbjct 1392 CGGTAA 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5