BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04614.1

Length=889
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943231 jgi|Araly1|943231|scaffold_603775.1                        765    0.0  


> Ahg943231 jgi|Araly1|943231|scaffold_603775.1
Length=557

 Score =  765 bits (414),  Expect = 0.0
 Identities = 522/569 (92%), Gaps = 27/569 (5%)
 Strand=Plus/Plus

Query  83   AGAGTTGTTATCATGAAGAAAGGTTtgatgcgatgggatgatgatgatgatgatgatgat  142
            |||||| ||||||||||||||||| ||||||    || ||  |  |||||||||||||||
Sbjct  10   AGAGTTCTTATCATGAAGAAAGGTATGATGC----GG-TG--G--GATGATGATGATGAT  60

Query  143  gaAGACTCTTCTGAGGAATCATCATCGTCTTCTGCTTCTGATTCAAATGTGGAT-A-A-T  199
               ||||| || ||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct  61   ---GACTCATCCGAGGAATCATCATCGTCTTCTGCTTCTGACTCAAATGTGGATGATAGT  117

Query  200  ACAGAGATTGGGgagaagaagaagaagagaaagagcaagaagccaatagcgaggtttgcg  259
            ||||||  |  || |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  118  ACAGAGGCT--GG-GAAGAAGAAGAAGAGAAAGAGCAAGAAGACAATAGCGAGGTTTGCG  174

Query  260  aagaaagataagaaagcTTTTGACTATGAATCTCTGCAGCAGCATGGTTACAAAGCTGTT  319
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  175  AAGAAAGATAGGAAAGCTTTTGACTATGAATCTCTGCAACAGCATGGTTACAAAGCTGTT  234

Query  320  GGTCTTTCTGATATTCCTGCTCCCATGGAGAAACAGGATTGGTCATGGACTACGGGAAAG  379
            |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  235  GGTCTTCCTGATATTCCTGCTCCCATGGAGAAACAGGATTGGTCATGGGCTACGGGAAAG  294

Query  380  GATA-AACAAAGAGTAGAGGAAGTGAAAGAAAGTTATCA-AGAACGAGAAGCTACAAGAG  437
            |||| || |||||||||||||||||||||| |||||| | ||||||||||||||||||| 
Sbjct  295  GATACAA-AAAGAGTAGAGGAAGTGAAAGAGAGTTAT-AGAGAACGAGAAGCTACAAGA-  351

Query  438  CTGCTGCGGTTACTGGTGGCGAGACGATTGCGAATGCGCAGTTGCGGAATGATAGGAAGA  497
              ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct  352  --GCTGCGGTTACAGGTGGTGAGACGATTGAGAATGCGCAGTTGCGGAATGATAGGAAGA  409

Query  498  ATCTCTCTTTTTCACagaaggagaagaagaagagagatttgggacaagcaagtagaggca  557
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  410  ATCTCTCTTTTTCACAGAAGGAGAAGAAGAAGAGAGATTTGGGACAAGCCAGTAGAGGCA  469

Query  558  agaattatgttgaagaagagaagagaCAGTTGAGAGAGAGTGGTGTTTACTCTGGTTTTG  617
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  470  AGAATTACGTTGAAGAAGAGAAGAGACAGTTGAGAGAGAGTGGTGTTTACTCTGGTTTTG  529

Query  618  ACTCTTAAGAGA-CTCAACTTTGAGGTAA  645
            | |||||| | | ||||||||||||||||
Sbjct  530  ATTCTTAAAA-ATCTCAACTTTGAGGTAA  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32938200288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5