BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04620.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943233 jgi|Araly1|943233|scaffold_603777.1 549 1e-155
Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962 416 1e-115
> Ahg943233 jgi|Araly1|943233|scaffold_603777.1
Length=406
Score = 549 bits (297), Expect = 1e-155
Identities = 345/369 (93%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 171 AGATACTAACCGAATCATCATGGAGAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAGAT 230
||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 3 AGATACTAATCGGATCGCCATGGCTAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAGAT 62
Query 231 GAGAATGGCTGAGTCTACTCGTATCAGAGCGAAATACCCTGAAAGAGTTCCCGTGATTGT 290
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 63 GAGAATGGCTGAATCTACTCGTATCAGAGCGAAATACCCAGACAGAGTTCCCGTGATTGT 122
Query 291 GGAAAAAGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGC 350
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGAGAAGGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAGC 182
Query 351 TGATCTAACCATTGGCCAATTTGTGTACGTTGTGAGGAAAAGAATCAAGCTTGGAGCTGA 410
||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 183 TGATCTAACTGTTGGCCAGTTTGTGTACGTTGTGAGAAAAAGAATCAAGCTGGGAGCCGA 242
Query 411 AAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCACCAACTGCGGCATTGATGTCTGC 470
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 243 AAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCCCCAACTGCTGCACTGATGTCTGC 302
Query 471 AATCTACGAAGAACACAAAGACGAAGACGGGTTTCTCTACATGACATACAGTGGAGAGAA 530
||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 303 AATATATGAGGAACACAAAGACGAAGATGGGTTTCTCTACATGACATACAGTGGAGAGAA 362
Query 531 CACATTTGG 539
|||||||||
Sbjct 363 CACATTTGG 371
> Ahg889976 jgi|Araly1|889976|Al_scaffold_0007_1962
Length=414
Score = 416 bits (225), Expect = 1e-115
Identities = 323/371 (87%), Gaps = 4/371 (1%)
Strand=Plus/Plus
Query 171 AGATACTAACCGAATCATCATGGAGAAGAACTCCTTCAAGCTTTCTAATCCTCTGGAGAT 230
||| ||||| |||||| ||||| |||| ||||||||| | ||||| ||||| |||
Sbjct 27 AGAGACTAATCGAATCGCCATGGCTAAGAGTTCCTTCAAGATCTCTAACCCTCTCGAGGC 86
Query 231 GAGAATG-GCTGAGTCTACTCGTATCAGAGCGAAATACCCTGAAAGAGTTCCCGTGATTG 289
|||||| | ||| ||| |||| ||||||| ||| |||||||| ||| ||||||||||||
Sbjct 87 AAGAATGAG-TGAATCTTCTCGAATCAGAGAGAAGTACCCTGACAGAATTCCCGTGATTG 145
Query 290 TGGAAAAAGCTGGACAGAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAG 349
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 TGGAAAAGGCTGGACAAAGTGATGTTCCTGACATTGACAAGAAGAAGTATCTTGTACCAG 205
Query 350 CTGATCTAACCA-TTGGCCAATTTGTGTACGTTGTGAGGAAAAGAATCAAGCTTGGAGCT 408
| |||||||| | |||| |||||||| || || || | |||||||||||||||||||||
Sbjct 206 CAGATCTAAC-AGTTGGACAATTTGTATATGTGGTTCGCAAAAGAATCAAGCTTGGAGCT 264
Query 409 GAAAAAGCCATCTTTGTCTTTGTCAAGAACACATTACCACCAACTGCGGCATTGATGTCT 468
|| ||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||||
Sbjct 265 GAGAAAGCTATCTTTGTCTTTGTTAAGAACACATTGCCTCCAACTGCTGCATTGATGTCT 324
Query 469 GCAATCTACGAAGAACACAAAGACGAAGACGGGTTTCTCTACATGACATACAGTGGAGAG 528
|||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct 325 GCAATCTATGAAGAACACAAAGATGAAGATGGGTTCCTCTACATGACTTACAGTGGAGAG 384
Query 529 AACACATTTGG 539
||||| |||||
Sbjct 385 AACACTTTTGG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5