BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04630.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943234 jgi|Araly1|943234|scaffold_603778.1 856 0.0
> Ahg943234 jgi|Araly1|943234|scaffold_603778.1
Length=552
Score = 856 bits (463), Expect = 0.0
Identities = 531/562 (94%), Gaps = 11/562 (2%)
Strand=Plus/Plus
Query 100 TGGTGATTTGATTtctctctctctctctcACAATGGATTCATTAGGATCAAGAAGAAGGA 159
||||||||||| | | ||||||||||| |||||||||| |||||||||||||||||
Sbjct 1 TGGTGATTTGA--T-T-TCTCTCTCTCT--CAATGGATTC---AGGATCAAGAAGAAGGA 51
Query 160 CACATAATAGCCGTAGGGTTCCTTCAATGGGAATAGAAGGGGACGAAGAGTTTCAAGAAG 219
|||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 52 CACATAATAGCCGTCGGGTTCCTTCAATGAGAATAGAAGGGGAAGAAGAGTTTCAAGAAG 111
Query 220 AAGATGTGTGGTCAGTT-TTACGAGAAGGAGAAACTTCAAGTCCTGAAATGAAAATACCC 278
||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||
Sbjct 112 AAGATGTGTGGTCAGTTCTGA-GAGAAGGAGAAACTTCAGGTCCTGAAATGAAAATACCC 170
Query 279 AAAAGTCATTTCTCTTCCTCATCATCTTCTTCCTCTTCACCATGGAACATTCGTAGAAGC 338
||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||
Sbjct 171 AAAAGTCATTTCTCTTCCTCATCTTCTTCTTCATCTTCACCGTGGAACATTCATAGAAGC 230
Query 339 AAGGAGGTCTCAGGAGTGAAACAATCATCAGCACCTATGAATGTCCCTGATTGGTCCAAG 398
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 231 AAGGAGGTCTCTGGAGTAAAACAGTCATCAGCACCTATGAATGTCCCTGATTGGTCCAAG 290
Query 399 GTTTATGGTGACTCAAAGAGCAACAGAAGGAGTAGCCATTTGCATTCTCATGCTGCTGAC 458
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 291 GTTTATGGTGACTCAAAGAGCAACAGAAGGAGTAGCCATTTGCATTTTCATGATGCTAAC 350
Query 459 gatgatgatgaagatgatgatgGTTGCATGGTTCCTCCACATGAATGGGTTGCAAGAAAG 518
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GATGATGAGGAAGATGATGATGGTTGCATGGTTCCTCCACATGAATGGGTTGCAAGAAAG 410
Query 519 CTAGCAAGAACACAGATCTCTTCTTTCTCTATGTGTGAAGGAGTTGGAAGAACACTTAAA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 CTAGCAAGAACACAGATCTCTTCTTTCTCTATGTGTGAAGGAGTTGGAAGAACTCTTAAA 470
Query 579 GGAAGAGATCTAAGCAAAGTGAGAAATGCTGTCTTGTCAAAAACTGGTTTCTTGGAGTAA 638
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 471 GGAAGAGATCTAAGCAAAGTGAGAAATGCTGTCTTGACAAAAACTGGATTCTTGGAGTAA 530
Query 639 GTAGGATAAAATATCTCATCAT 660
|||||||| |||||||||||||
Sbjct 531 GTAGGATATAATATCTCATCAT 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5