BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04693.1 Length=1305 Score E Sequences producing significant alignments: (Bits) Value Ahg943240 jgi|Araly1|943240|scaffold_603784.1 403 1e-111 > Ahg943240 jgi|Araly1|943240|scaffold_603784.1 Length=1234 Score = 403 bits (218), Expect = 1e-111 Identities = 265/288 (92%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 1 ATGGAGGAGAACGTGCAATTAGGGTTTGGAGGCTGGTCTCTACGAATGAGCATCTTAATT 60 |||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||| Sbjct 815 ATGGAGGAGAACGTGCGATCAGGGTTTGGAGGCTGGTGTCTACGAATGAGAATCTTAATT 874 Query 61 CATGGCAACTCTCATGGAACGTCAATACAAAGGGTGAGGTTGATTATTTCCAAGTGGTCA 120 ||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||| Sbjct 875 CATGGCAACTCTCATGGAAAGTCAATACCAAGGGTGACGTTGATTATTTCCCTGTGGTCA 934 Query 121 TGCATCCTATAAACTTTGATGAATTATTTACCTGTGAAGTTGGAACAAGAACGCCCTCGT 180 ||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 935 TGCATCCTATAAATTTTGATG--TCATTTACCTGTGGAGTTGGAACAAGAACGCCCTCGT 992 Query 181 CTTGTTTAATTTGAGGACACAAACGTCTAGTCTTCACAGAGAGGGAAAGAAGAGCAAGTC 240 ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||| Sbjct 993 CTTGTTTAATTTGAGGACACAAAAGTATAGTCTTCGCAGAGAGGCAAAGAAGAGCAAGTC 1052 Query 241 TATGGATGGTTGCATCTTGACATTCAACAATTGTAAAGAGTACATGGA 288 |||||||||||||||||||||||||| ||| || || ||||| ||||| Sbjct 1053 TATGGATGGTTGCATCTTGACATTCAGCAACTGCAAGGAGTATATGGA 1100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48797333760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5