BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04693.1

Length=1305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943240 jgi|Araly1|943240|scaffold_603784.1                        403    1e-111


> Ahg943240 jgi|Araly1|943240|scaffold_603784.1
Length=1234

 Score =  403 bits (218),  Expect = 1e-111
 Identities = 265/288 (92%), Gaps = 2/288 (1%)
 Strand=Plus/Plus

Query  1     ATGGAGGAGAACGTGCAATTAGGGTTTGGAGGCTGGTCTCTACGAATGAGCATCTTAATT  60
             |||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||
Sbjct  815   ATGGAGGAGAACGTGCGATCAGGGTTTGGAGGCTGGTGTCTACGAATGAGAATCTTAATT  874

Query  61    CATGGCAACTCTCATGGAACGTCAATACAAAGGGTGAGGTTGATTATTTCCAAGTGGTCA  120
             ||||||||||||||||||| |||||||| |||||||| |||||||||||||  |||||||
Sbjct  875   CATGGCAACTCTCATGGAAAGTCAATACCAAGGGTGACGTTGATTATTTCCCTGTGGTCA  934

Query  121   TGCATCCTATAAACTTTGATGAATTATTTACCTGTGAAGTTGGAACAAGAACGCCCTCGT  180
             ||||||||||||| |||||||  | ||||||||||| |||||||||||||||||||||||
Sbjct  935   TGCATCCTATAAATTTTGATG--TCATTTACCTGTGGAGTTGGAACAAGAACGCCCTCGT  992

Query  181   CTTGTTTAATTTGAGGACACAAACGTCTAGTCTTCACAGAGAGGGAAAGAAGAGCAAGTC  240
             ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||
Sbjct  993   CTTGTTTAATTTGAGGACACAAAAGTATAGTCTTCGCAGAGAGGCAAAGAAGAGCAAGTC  1052

Query  241   TATGGATGGTTGCATCTTGACATTCAACAATTGTAAAGAGTACATGGA  288
             |||||||||||||||||||||||||| ||| || || ||||| |||||
Sbjct  1053  TATGGATGGTTGCATCTTGACATTCAGCAACTGCAAGGAGTATATGGA  1100



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48797333760


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5