BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04695.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352390 jgi|Araly1|352390|fgenesh1_pg.C_scaffold_6002983 2089 0.0
Ahg490110 jgi|Araly1|490110|fgenesh2_kg.6__3244__AT4G04720.1 821 0.0
> Ahg352390 jgi|Araly1|352390|fgenesh1_pg.C_scaffold_6002983
Length=1455
Score = 2089 bits (1131), Expect = 0.0
Identities = 1358/1466 (93%), Gaps = 22/1466 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTGCTACAGCAGTAAGAACCTAAAACAATCAAAAAGAACCATTCTTGAGAAACCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGCTACAGCAGTAAGAACCTAAAACAATCAAAAAGAACCATTCTTGAGAAACCA 60
Query 61 TTCGTTGACATCGGAAAGGTTTACATCCTCGGGGATGAATTGGGTCAAGGCCAATTCGGT 120
|||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTCGTTGACATCACAAAGATTTACATCCTCGGTGATGAATTGGGTCAAGGCCAATTCGGT 120
Query 121 ATAACTCGAAAATGCGTTGAGAAGACTTCAGGTAAGACTTACGCCTGCAAGACCATTCTC 180
|||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||
Sbjct 121 ATAACTCGAAAATGCGTTGAGAAGTCAACTGGTAAGACTTACGCCTGCAAAACCATTCTC 180
Query 181 AAGACGAATCTAAAG-A-GTAGAGAAGATGAAGAAGCCGTGAAGAGAGAGATTCGTATCA 238
||||||||||||||| | | | |||||||||| |||| |||||||||||||||||||| |
Sbjct 181 AAGACGAATCTAAAGAACG-A-AGAAGATGAACAAGCTGTGAAGAGAGAGATTCGTATTA 238
Query 239 TGAAGCATTTGTCTGGAGAACCGAACATTGTTGAGTTCAAGAAAGCTTACGAGGACAGAG 298
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 239 TGAAGCATTTGTCTGGAGAACCAAACATTGTGGAGTTCAAGAAAGCTTACGAGGACAAAG 298
Query 299 ATTCTGTACATATTGTTATGGAATATTGTGGTGGTGGAGAGTTATTCAAAAAGATCGAAG 358
|||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 299 ATTCTGTACATATTGTGATGGAGTTTTGTGGTGGTGGAGAGTTGTTCAAAAAGATCGAAG 358
Query 359 CTTTGTCCAAAGATGGA-AAGTCTTACTCCGAGAAAGAAGCTGTTGAAATCATTAGGCCG 417
||||||| || | | || |||| |||||| |||||||| ||||||| |||||||||||||
Sbjct 359 CTTTGTCTAATGCT-GACAAGTTTTACTCTGAGAAAGATGCTGTTGGAATCATTAGGCCG 417
Query 418 ATTGTGAATGTTGT-CAAGAATTGTCATTACATGGGTGTGATGCTTCGTGATCTAAAGCC 476
|||||||||||||| | ||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 418 ATTGTGAATGTTGTGC-AGATTTGCCATTACATGGGTGTGATGCATCGTGATCTAAAGCC 476
Query 477 TGAGAATTTCTTGCTCTCCAGTACCGATAAGAATGCTACGGTCAAAGCTATCGACTTCGG 536
||||||||||||||| || ||||||||| | ||||||| | |||||||||| ||||| ||
Sbjct 477 TGAGAATTTCTTGCTTTCGAGTACCGATGACAATGCTATGCTCAAAGCTATTGACTTTGG 536
Query 537 GTGTTCTGTTTTCATTGAAGAAGGAGAAGTACACCGGAAATT-CGCTGGGAGTGCTTACT 595
||||||||| ||||| |||||||||||||| ||||| ||| || ||||||||||||||
Sbjct 537 GTGTTCTGTCTTCATCCAAGAAGGAGAAGTATACCGG-GATTGCGTTGGGAGTGCTTACT 595
Query 596 ACATTGCTCCTGAAGTGTTACAGGGAAAATACGGTAAAGAAGCGGACATTTGGAGTGCAG 655
|| ||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 596 ACGTTGCTCCTGAAGTATTACAGGGAAGTTACGGGAAAGAAGCCGACATTTGGAGTGCAG 655
Query 656 GGATTATATTGTACATCCTACTCTGCGGCAAACCTCCCTTTGTGACAGAACCTGAGGCAC 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GGATTATATTGTACATCCTACTCTGCGGCAAACCTCCCTTTGTGACAGAACCTGAGGCAA 715
Query 716 AGATGTTCTCTGAGATAAAGAGTGCCAAAATCGACGTTG-ACAGCGAATCATGGAAGT-T 773
| |||||| |||||| ||||||||| |||||||| || |||||||| ||||| | |
Sbjct 716 AAATGTTCAATGAGATTAAGAGTGCCGAAATCGAC-TTCCACAGCGAACCATGGCC-TCT 773
Query 774 TATAGAT-GTGAAGGCAAAACATCTTGTCAAT-AGGATGCTTAAC-AGAAACCCCAAGGA 830
||| ||| | |||||||||||||||||||| | |||||||||| | ||||||||||||||
Sbjct 774 TATTGATAG-GAAGGCAAAACATCTTGTCA-TGAGGATGCTTA-CTAGAAACCCCAAGGA 830
Query 831 ACGAATCTCTGCTGCAGAGGTTCTTGGACATCCTTGGATGAAAGACGGAGAAGCTTCAGA 890
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 831 ACGAATCTCTGCTGCAGAGGTTCTTCGACATCCTTGGATGAAAGACGGAGAAGCTTCGGA 890
Query 891 TAAGCCTATTGATGGCGTTGTTTTATCTCGATTGAAGCAATTTCGAGATATGAACAAGCT 950
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 891 TAAGCCTATTGATGGCGTTGTTTTATCCCGATTGAAGCAATTTCGAGATATGAACAAGCT 950
Query 951 AAAGAAAGTAGCTCTAAAGGTTATTGCAGCAAATCTATCGGAAGAGGAAATCAAAGGTCT 1010
||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 951 TAAGAAGGTAGCTCTTAAGGTTATTGCAGCAAGTCTATCAGAAGAGGAAATCAAAGGTCT 1010
Query 1011 TAAAACACTGTTCACCAACATTGATACCGACAAAAGTGGCACAATCACTCTTGAAGAACT 1070
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1011 TAAAACACTGTTCACCAACATTGATACCGACAAAAGTGGCACAATAACTCTTGAAGAACT 1070
Query 1071 CAAAACAGGTCTTACTAGACTTGGATCTAACCTCTCTAAAACCGAAGTGGAGCAACTCAT 1130
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAAAACAGGTCTAACTAGACTTGGATCTAACCTCTCTAAAACCGAAGTGGAGCAACTCAT 1130
Query 1131 GGAAGCTGCTGATGTGGATGGTAATGGAACAATCGACATAGACGAGTTTATCTCTGCCAC 1190
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GGAAGCCGCTGATGTGGATAGAAATGGAACAATCGACATAGACGAGTTTATCTCTGCCAC 1190
Query 1191 GATGCATAGATATAGATTGGATAGAGATGATCATGTGTACCAAGCATTCCAACACTTTGA 1250
|||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1191 GATGCATAGATATAAACTGGATCGAGATGATCATGTGTACAAAGCATTCCAACACTTTGA 1250
Query 1251 CAAAGACAATGACGGGCACATAACCAAGGAAGAGTTGGAGATGGCAATGAAAGAGCATGG 1310
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1251 CAAAGACAACGACGGGCACATAACGAAGGAAGAGTTGGAGATGGCAATGAAGGAGCATGG 1310
Query 1311 TGTGGGAGATGAAG-TTAGCATCAAACAAATCATAACCGAAGTTGATACCGATAATGATG 1369
|||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1311 TGTGGGAGATGAAGGTT-GCATCAAACAAATCATAACCGAAGTCGATACCGATAATGATG 1369
Query 1370 GGAAAATAAACTTTGAGGAATTCCGCACAATGATGAGAAGTGGCAGCAGCTTGCAGCCAC 1429
| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1370 GAAAAATAAACTTTGAAGAATTCCGCACAATGATGAGAAGTGGCAGCAACTTGCAGCCAC 1429
Query 1430 AAAGGGAGCTTCTTCCGATCAAGTGA 1455
|| ||||||||||||| |||||||||
Sbjct 1430 AAGGGGAGCTTCTTCCAATCAAGTGA 1455
> Ahg490110 jgi|Araly1|490110|fgenesh2_kg.6__3244__AT4G04720.1
Length=1906
Score = 821 bits (444), Expect = 0.0
Identities = 1028/1298 (79%), Gaps = 88/1298 (7%)
Strand=Plus/Plus
Query 175 ATTCTCAAGACGAATCTAAAGAGTAGAG-AAGATGAAGAAGCCGTGAAGAGAGAGATTC- 232
||||| |||| ||| |||| |||| || ||||| |||||| ||||||||||||||||
Sbjct 465 ATTCTTAAGAGGAAGCTAATTAGTA-AGCAAGATAAAGAAGATGTGAAGAGAGAGATTCA 523
Query 233 GTATCATGAAGCATTTGTCTGGAGAACCGAACATTGTTGAG-TTCAAGAAAGCTTACGAG 291
| || ||| || ||||||||||| |||| |||||||||||| || ||| ||||| |||
Sbjct 524 G-ATAATGCAGTATTTGTCTGGACAACCAAACATTGTTGAGATTAAAG-GTGCTTATGAG 581
Query 292 GACAGAGATTCTGTACATATT-GTTATGGAATAT-TGTGGTGGTGGAGAGTTATTCAAAA 349
|| ||| | ||||| ||| || |||||||| | | |||| |||||| ||||| ||
Sbjct 582 GATAGACAGTCTGTGCAT-TTGGTTATGGAGT-TGTGTGCTGGTGGTGAGTTGTT----- 634
Query 350 AGATCGAAGCTTTGTCCAAAGATGGAAAGTC-TTACTCCGAGAAAGAAGCTGTTGAAATC 408
||| || | | | || | || ||| |||||| |||| || |||| || |||
Sbjct 635 TGAT---AG-GAT-T--ATAGCT-CAAGGTCATTACTCTGAGAGAGCTGCTGCTGGTATC 686
Query 409 ATTAGGCCGATTGTGAATGTTG-TCAAGAATTGTCATTACATGGGTGTGATGCTTCGTGA 467
|||||| | ||||| ||||||| || ||| |||||||| ||||||||| | | ||| ||
Sbjct 687 ATTAGGTCTATTGTCAATGTTGTTC-AGATTTGTCATTTTATGGGTGTGGTTCATCGAGA 745
Query 468 TCTAAAGCCTGAGAATTTCTTGCTCTCCAGTACCGATAAGAATGCTACGGTCAAAGCTAT 527
||| |||||||||||||||||||| || |||| || ||||||||| | | |||||||
Sbjct 746 TCTTAAGCCTGAGAATTTCTTGCTTTCGAGTAAAGAGGAGAATGCTATGCTTAAAGCTA- 804
Query 528 C-GACTTCGGG-TGTTCTGTTTTCATTGAAGAAGGAGAAGTACACC-GGAAATTCGCTGG 584
| || |||||| || ||||| ||||| ||||||||| |||| ||| ||| | | | |||
Sbjct 805 CTGATTTCGGGTTG-TCTGTCTTCATCGAAGAAGGAAAAGTTTACCGGGATA-TAGTTGG 862
Query 585 GAGTGCTTACTACATTGCTCCTGAAGTGTTACAGG-GAAAATACGGTAAAG-AAGCGGAC 642
||||||||||||| ||||||||||||| ||| ||| ||| || || |||| || | |||
Sbjct 863 GAGTGCTTACTACGTTGCTCCTGAAGTATTA-AGGCGAAGTTATGGGAAAGAAATC-GAC 920
Query 643 ATTTGGAGTGCAGG-GATTATATTGTACATCCTACTCTGCGGCAAACCTCCCTTTGT-GA 700
|||||||||||||| | | || || |||||||||||| |||| |||| ||||| | |
Sbjct 921 ATTTGGAGTGCAGGTG-TCATTTTATACATCCTACTCAGCGGTGTACCT-CCTTTTTGGG 978
Query 701 CAGAACCTGAGGCACA-G-ATGTTCTCTGA-G--AT-AAAGAGTGCCAAAATCGACGTTG 754
| ||| ||| | | | | || ||| ||| | || |||| ||| |||| || |||
Sbjct 979 CCGAAAATGA-G-AAAGGAATATTCGATGAGGTTATAAAAG-GTG---AAATTGATTTTG 1032
Query 755 ACAGCGAATCATGGAAGTTTATAGATGTGA-AG-GCAAAACATCTTGTCAATAGGATGCT 812
| | | || ||||| || ||| || ||| || |||||| ||||||| | | |||||
Sbjct 1033 AAACCCAACCATGGCCGTCTAT--ATCTGAGAGCGCAAAAGATCTTGTTAGGAAGATGC- 1089
Query 813 TAA-CAGAA-ACCCCAAGGA-ACGAATCTCTGCTGCAGAGGTTCTTGGACATCCTTGGAT 869
||| || || |||| || || |||||| | |||||| ||||||||| ||||||||||||
Sbjct 1090 TAACCA-AAGACCCGAA-GAGGCGAATCACGGCTGCACAGGTTCTTGAACATCCTTGGAT 1147
Query 870 GAAAGACGGAGAAGCTTCAGATAAGCCTATTGATGGCGTTGTTTTATCTCGAT-TGAAGC 928
|||| |||||||| | || ||||| |||||| ||| ||| |||||||| | ||||||
Sbjct 1148 CAAAGGGGGAGAAGCACCGGACAAGCCGATTGATAGCGCTGTGTTATCTCG-TATGAAGC 1206
Query 929 AATTTCGAG-ATATGAACAAGCTAAAGAAAG-TAGCTCTAAAGGTTATTGCAGCA-AATC 985
|||| || | | ||||||||||| ||| ||| ||||| |||||||||| |||| | | ||
Sbjct 1207 AATTCCGTGCA-ATGAACAAGCTTAAG-AAGCTAGCTTTAAAGGTTATAGCAG-AGAGTC 1263
Query 986 TATCGGAAGAGGAAATCAAAGGTCTTAAAA-CACTGTTCACCAACATTGATACCGACAAA 1044
|||||||||||||||||||||| ||||||| || |||| | || || ||||| || |||
Sbjct 1264 TATCGGAAGAGGAAATCAAAGGCCTTAAAACCA-TGTTTGCAAATATAGATACTGATAAA 1322
Query 1045 AGTGGCACAATCACTCT-TGAAGAACTCAAAACAGGTCTTACTAGACTTGGATCTA-ACC 1102
|| || ||||||||| | ||||||||||||||| || || ||||| ||||| |||| | |
Sbjct 1323 AGCGGGACAATCACT-TATGAAGAACTCAAAACCGGGCTAACTAGGCTTGGGTCTAGA-C 1380
Query 1103 TCTCTAAAACCGAAGTGGAGCAACTCATGGAAGCTGCTGATGTGGATGGTAATGGAACAA 1162
||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1381 TCTCTGAAACTGAAGTAAAGCAACTCATGGAAGCCGCTGATGTGGATGGTAATGGAACAA 1440
Query 1163 TCGACATAG-ACGAGTTTATCTCTGCCACGATGCATAGATATAGATTGGATAGAGATGAT 1221
||||| || |||||||||||||||| || ||||||||||| | ||||||| |||||||
Sbjct 1441 TCGAC-TACTACGAGTTTATCTCTGCAACAATGCATAGATACAAATTGGATCGAGATGAG 1499
Query 1222 CATGTGTACCAAGCATTCCAACACTTTGACAAAGACAAT-GACGGGCACATAACCAAGGA 1280
||||| ||| ||||||||||||||||||| ||||||||| | |||||||||||| | |||
Sbjct 1500 CATGTATACAAAGCATTCCAACACTTTGATAAAGACAATAG-CGGGCACATAACTAGGGA 1558
Query 1281 AGAGTTGGAGA-TGGCAATGAAAGAGCATGGTGTGGGAGATGAAGTTAGCATCAAACAAA 1339
|||||||| | || || ||||||| |||| |||||||||||| |||||||||| ||
Sbjct 1559 TGAGTTGGAAAGTGCCA-TGAAAGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAG 1617
Query 1340 TCATAACCGAAGTTGATACCGATAATGATGGGAA-AATAAACTTTGAGGAATTCCGCACA 1398
| ||| |||||||||||||||| |||||||| || |||||||||||||||||| || |
Sbjct 1618 TTATATCCGAAGTTGATACCGACAATGATGG-AAGAATAAACTTTGAGGAATTTTGCGCG 1676
Query 1399 ATGATGAGAAGTGGCAGCAGCTTGCAGCCACAAAGGGA 1436
||||||||||| |||| || | ||||||||| ||||
Sbjct 1677 ATGATGAGAAGCGGCACCA-CA--CAGCCACAA-GGGA 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5