BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04710.1
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490109 jgi|Araly1|490109|fgenesh2_kg.6__3243__AT4G04710.1 1862 0.0
Ahg490110 jgi|Araly1|490110|fgenesh2_kg.6__3244__AT4G04720.1 785 0.0
Ahg943245 jgi|Araly1|943245|scaffold_603789.1 741 0.0
Ahg945969 jgi|Araly1|945969|scaffold_702198.1 712 0.0
Ahg945962 jgi|Araly1|945962|scaffold_702191.1 121 2e-26
Ahg354567 jgi|Araly1|354567|fgenesh1_pg.C_scaffold_7001740 121 2e-26
> Ahg490109 jgi|Araly1|490109|fgenesh2_kg.6__3243__AT4G04710.1
Length=1488
Score = 1862 bits (1008), Expect = 0.0
Identities = 1222/1324 (92%), Gaps = 20/1324 (2%)
Strand=Plus/Plus
Query 129 CAA-AGGAAAGAGTTACGCTTGCAAATCCATACCTAAGAGAACTCTAAGCAGCGAAGAAG 187
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 161 CAACAGGAAAGAGTTACGCTTGCAAATCCATACTTAAGAGAACTCTAAGCAGTGAAGAAG 220
Query 188 AAAAAGAAGCTGTGAAGACAGAGATTCAAATCATGGATCATGTTTCAGGACAGCCTAACA 247
| ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 221 AGAAAGAAGCTGTCAAGACAGAGATTCAAATCATGGATCATGTTTCAGGAGACCCTAACA 280
Query 248 TCGTACAGATCAAAGGTTCCTACGAAGATAATAATTCTATACACATTGTAATGGAATTGT 307
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || |
Sbjct 281 TCGTACAGATCAAAGGTTCTTACGAGGATAAGAATTCTATACACATTGTAATGGAGTTTT 340
Query 308 GTGGTGGTGGTGAGTTATTCGACAAGATCGATGCTTTGGTCAAGTCTCATAGCTATTACT 367
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 341 GTGGTGGTGGTGAGTTATTCGACAAGATTGATGCTTTGGTCAAGTCTCATAGCTATTACT 400
Query 368 CTGAGAAAGATGCTGCTGGAATCTTTAGGTCTATTGTGAATGCTGTGAAGATTTGTCATT 427
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 401 CTGAGAAAGATGCTGCTGGAATCTTTAGGTCGATTGTGAATGCTGTGAAGATTTGTCATT 460
Query 428 CTTTGGATGTCGTTCATCGTGATCTCAAGCCTGAGAACTTCTTGTTCTCTAGTAAAGATG 487
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 461 CTTTGGATGTTGTTCATCGTGATCTCAAGCCTGAGAACTTCTTGTTCTCTAGTAACGATG 520
Query 488 AGAATGCTATGCTTAAAGCTATCGATTTCGGGTGTTCTGTTTACATCAAAGAAGGGAAAA 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 521 AGAATGCTATGCTTAAAGCTATCGATTTCGGGTGTTCTGTTTACATCAAAGAAGGGCAAA 580
Query 548 CTTTTGAGAGAGTTGTTGGAAGTAAATACTACATTGCTCCTGAAGTATTAGAGGGAAGCT 607
|||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 581 CTTTAGAGAGAATTGTTGGCAGTAAATACTACATTGCTCCTGAAGTATTAGAGGAAAGCT 640
Query 608 ATGGGAAAGAAATCGACATTTGGAGTGCTGGTGTTATTTTATACATCCTACTGAGCGGCG 667
||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 641 ATGGGAAGGAAATCGACATTTGGAGTGCTGGTGTTATATTATACATCTTACTCAGCGGCC 700
Query 668 T-ACCGCCATTTCAAACTGGA-AT-TGAA-T-CTAT--AATTGTGTCTACTCTTTGTATT 720
| | || | | | || || || || | || | ||||| |||||||||| |||||
Sbjct 701 TTAA-GCTAAAT-AC-CTTGAGATGTGTTCTTCTCTGTAATTGCGTCTACTCTT-GTATT 756
Query 721 GTAGATGCTGAGATTAAAGAATGCAGGCTTGATTTTGAGAGCCAACCATGGCCTTTGATA 780
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 757 GTAGATGCTGAGATTAAGGAAGGCAGGCTTGATTTTGAGAGCCATCCATGGCCTTTGATA 816
Query 781 TCTTTTAAAGCGAAGCACCTTATCGGGAAGATGCTCACCAAAAAACCGAAGGAACGAATC 840
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 817 ACTTTTAAAGCGAAGCACCTTATCGGGAAGATGCTCACCAAAAACCCGAAGGAACGAATC 876
Query 841 TCTGCTGCAGATGTTCTTGAACATCCATGGATGAAAAGCGAAGCTCCAGATAAGCCTATT 900
|||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct 877 TCTGCTGCAGATGTTCTTGAACATCCTTGGATGAAGAGTGAAGCTCCAGATCAGCCTATT 936
Query 901 GATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTA 996
Query 961 GCTCTTAAGGTTATTGCGGAGGGTCTATCGGAAGAGGAGATCAAAGGTCTTAAAACCATG 1020
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 997 GCTCTTAAGGTTATCGCGGAGGGTCTATCAGAAGAGGAAATCAAAGGTCTTAAAACCATG 1056
Query 1021 TTTGAGAATATGGATATGGACAAAAGCGGGTCAATCACTTATGAAGAACTCAAAATGGGG 1080
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1057 TTTGAGAATATGGACACCGACAATAGCGGGTCAATCACTTATGAAGAACTCAAAACCGGG 1116
Query 1081 CTGAATAGACATGGCTCTAAACTCTCTGAGACTGAAGTTAAGCAACTCATGGAAGCAGTG 1140
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1117 CTGAATAGACATGGCTCTAAACTCTCTGAAACTGAAGTTAGGCAACTCATGGAAGCCG-- 1174
Query 1141 AGTGCTGATGTTGATGGGAATGGAACAATTGACTACATAGAGTTTATCTCAGCGACGATG 1200
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1175 ----CTGATGTTGACGGGAATGGAACAATAGACTACATAGAGTTTATCTCAGCAACGATG 1230
Query 1201 CATAGACACCGTTTGGAACGAGATGAACATTTATACAAAGCATTCCAATACTTTGATAAA 1260
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1231 CATAGACACAGATTGGAACGAGATGAACATTTGCACAAAGCATTCCAATACTTTGATAAG 1290
Query 1261 GACGGA-AGCGGGCACATAACGAAGGAGGAAGTGGAGATAGCAATGAAAGAGCATGGTAT 1319
||| | |||||| ||||||||| ||| ||| |||||||||| ||||| |||||||||||
Sbjct 1291 GACA-ACAGCGGGTACATAACGAGGGATGAATTGGAGATAGCCATGAAGGAGCATGGTAT 1349
Query 1320 GGGAGATGAAGCTAATGCCAAAGATTTGATTTCAGAATTCGATAAAAACAACGATGGAAA 1379
||||||||||||||||||||||||| | || |||||| |||||||||| || ||||||||
Sbjct 1350 GGGAGATGAAGCTAATGCCAAAGATATAATATCAGAAGTCGATAAAAATAATGATGGAAA 1409
Query 1380 AATAGACTATGAGGAGTTTTGTACGATGATGAGAAATGGCATCTTGCAACCACAAGGGAA 1439
||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1410 AATAGACTATGAGGAATTTTGTACTATGATGAGAAATGGCAACTTGCAGCCACAAGGGAA 1469
Query 1440 ACTT 1443
||||
Sbjct 1470 ACTT 1473
Score = 156 bits (84), Expect = 6e-37
Identities = 113/126 (90%), Gaps = 6/126 (5%)
Strand=Plus/Plus
Query 9 TTGCTGCGGAAGTAAACCCCTAACAGCTTCTGATATCGTCTCGGATCAAAAGCAAGAGAC 68
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 6 TTGCTGCGGAAGTAAACCCCTAACAGCTTCTGATATCG-AT-GG----AAAGCAAGAGAC 59
Query 69 GATTCTTGGGAAGCCATTGGAAGATATCAAGAAGCACTATAGCTTCGGTGACGAACTAGG 128
|||||||||||||||||||||||| |||||||||| |||||||||| | |||||||||
Sbjct 60 GATTCTTGGGAAGCCATTGGAAGACATCAAGAAGCTTTATAGCTTCGAAGGCGAACTAGG 119
Query 129 CAAAGG 134
||||||
Sbjct 120 CAAAGG 125
> Ahg490110 jgi|Araly1|490110|fgenesh2_kg.6__3244__AT4G04720.1
Length=1906
Score = 785 bits (425), Expect = 0.0
Identities = 1050/1336 (79%), Gaps = 106/1336 (8%)
Strand=Plus/Plus
Query 141 TTACGCTTGCAAATCCATACCTAAGA-GAACTCTAAGCAGCGAAG-AAGAAAAAGAAGCT 198
||| ||||| ||||| || | ||||| ||| |||| || ||| |||| ||||||| |
Sbjct 449 TTATGCTTGTAAATCGATTCTTAAGAGGAA-GCTAATTAG-TAAGCAAGATAAAGAAGAT 506
Query 199 GTGAAGACAGAGATTCAAATCATGGA-TCATGTT-TCAGGACAGCCTAACATCGTACAGA 256
||||||| ||||||||| || ||| | | || || || ||||| || ||||| || |||
Sbjct 507 GTGAAGAGAGAGATTCAGATAATGCAGT-AT-TTGTCTGGACAACCAAACATTGTTGAGA 564
Query 257 TCAAAGGTTCCTACGAAGATAATA-ATTCTATACACATT-GTAATGGAATTGTGTGGTGG 314
| |||||| | || || ||| | | | ||| | || || || ||||| ||||||| |||
Sbjct 565 TTAAAGGTGCTTATGAGGAT-AGACAGTCTGTGCA-TTTGGTTATGGAGTTGTGTGCTGG 622
Query 315 TGGTGAGTTATTCGACAAGATCGATGCTTTGGTCAAGTCTCATAGCT-ATTACTCTGAGA 373
||||||||| || || || || || | || |||| || | ||||||||||||
Sbjct 623 TGGTGAGTTGTTTGA-TAG---GA----TT-AT--AG-CTCA-AGGTCATTACTCTGAGA 669
Query 374 AAGATGCTGCTGGAATCTTTAGGTCTATTGTGAATGCTGTGAAGATTTGTCATTCTT-TG 432
|| ||||||||| ||| ||||||||||||| |||| ||| |||||||||||| || ||
Sbjct 670 GAGCTGCTGCTGGTATCATTAGGTCTATTGTCAATGTTGTTCAGATTTGTCATT-TTATG 728
Query 433 GATGTCGTTCATCGTGATCTCAAGCCTGAGAACTTCTTG-TTCTCTAGTAAAGATGAGAA 491
| ||| |||||||| ||||| ||||||||||| |||||| || || |||||||| |||||
Sbjct 729 GGTGTGGTTCATCGAGATCTTAAGCCTGAGAATTTCTTGCTT-TCGAGTAAAGAGGAGAA 787
Query 492 TGCTATGCTTAAAGCTA-TCGATTTCGGGT-GTTCTGT-TTACATCAAAGAAGGGAAAAC 548
||||||||||||||||| | |||||||||| || |||| || |||| ||||||| ||||
Sbjct 788 TGCTATGCTTAAAGCTACT-GATTTCGGGTTGT-CTGTCTT-CATCGAAGAAGG-AAAAG 843
Query 549 TTTTGAGAGAGT-T-GTTGGAAGTAAATACTACATTGCTCCTGAAGTATTAGAGG-GAAG 605
||| | || | | ||||| ||| |||||| ||||||||||||||||| ||| ||||
Sbjct 844 TTTACCGGGA-TATAGTTGGGAGTGCTTACTACGTTGCTCCTGAAGTATTA-AGGCGAAG 901
Query 606 CTATGGGAAAGAAATCGACATTTGGAGTGCTGGTGTTATTTTATACATCCTACTGAGCGG 665
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 902 TTATGGGAAAGAAATCGACATTTGGAGTGCAGGTGTCATTTTATACATCCTACTCAGCGG 961
Query 666 CGTACCGCCATTTCAAACTGGAATTGAATCTATAATTGTGTCTACTCTTTGTATTGTAGA 725
||||| || ||| | | || ||| | || | | || || | || | ||
Sbjct 962 TGTACCTCCTTTTTGGGCCGAAAATGAG---A-AA--G-GAATATTC---G-AT-G-AGG 1008
Query 726 TGCTGAGATTAAAGAATGCAGGCTTGATTTTGAGAGCCAACCATGGCCTT-TGATATCTT 784
| | | | |||| || | |||||||||| | |||||||||||| | | ||||||
Sbjct 1009 T--T-ATA--AAAGG-TGAAA--TTGATTTTGAAACCCAACCATGGCCGTCT-ATATCTG 1059
Query 785 TTAAAGCG-AA--GCACCTTATCGGGAAGATGCTCACCAAAAAACCGAAG-GAACGAATC 840
| |||| || | | ||| | |||||||||| |||||| | |||||| | ||||||
Sbjct 1060 --AGAGCGCAAAAG-ATCTTGTTAGGAAGATGCTAACCAAAGACCCGAAGAGG-CGAATC 1115
Query 841 TCTGCTGCAGATGTTCTTGAACATCCATGGATGAAAAGCG-A-A-GCTCCAGATAAGCCT 897
| |||||| | |||||||||||||| ||||| ||| | | | | || || || |||||
Sbjct 1116 ACGGCTGCACAGGTTCTTGAACATCCTTGGATCAAAGGGGGAGAAGCACCGGACAAGCCG 1175
Query 898 ATTGATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAG 957
||||||| | ||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1176 ATTGATAGCGCTGTGTTATCTCGTATGAAGCAATTCCGTGCAATGAACAAGCTTAAGAAG 1235
Query 958 CTTGCTCTTAA-GGTTATTGCGGAGGGTCTATCGGAAGAGGAGATCAAAGGTCTTAAAAC 1016
|| ||| |||| |||||| || ||| |||||||||||||||| |||||||| ||||||||
Sbjct 1236 CTAGCT-TTAAAGGTTATAGCAGAGAGTCTATCGGAAGAGGAAATCAAAGGCCTTAAAAC 1294
Query 1017 CATGTTTG-AGAATATGGATA-TGGACAAAAGCGGGTCAATCACTTATGAAGAACTCAAA 1074
|||||||| | ||||| |||| || | ||||||||| |||||||||||||||||||||||
Sbjct 1295 CATGTTTGCA-AATATAGATACTG-ATAAAAGCGGGACAATCACTTATGAAGAACTCAAA 1352
Query 1075 ATGGGGCTGAA-TAGACATGGCTCTAAACTCTCTGAGACTGAAGTTAAGCAACTCATGGA 1133
| ||||| || ||| | ||| |||| ||||||||| |||||||| ||||||||||||||
Sbjct 1353 ACCGGGCT-AACTAGGCTTGGGTCTAGACTCTCTGAAACTGAAGTAAAGCAACTCATGGA 1411
Query 1134 AGCAGTGAGTGCTGATGTTGATGGGAATGGAACAATTGACTACATA-GAGTTTATCTCAG 1192
||| | ||||||| ||||| ||||||||||| |||||| || ||||||||||| |
Sbjct 1412 AGCCG------CTGATGTGGATGGTAATGGAACAATCGACTAC-TACGAGTTTATCTCTG 1464
Query 1193 CGACGATGCATAGACACCGTTTGGAACGAGATGAACATTTATACAAAGCATTCCAATACT 1252
| || ||||||||| || ||||| |||||||| ||| ||||||||||||||||| |||
Sbjct 1465 CAACAATGCATAGATACAAATTGGATCGAGATGAGCATGTATACAAAGCATTCCAACACT 1524
Query 1253 TTGATAAAGACGGA-AGCGGGCACATAACGAAGGAGGAAGT-GGAGA-TAGCAATGAAAG 1309
||||||||||| | |||||||||||||| | ||| || || ||| | | || |||||||
Sbjct 1525 TTGATAAAGACA-ATAGCGGGCACATAACTAGGGATGA-GTTGGAAAGT-GCCATGAAAG 1581
Query 1310 AGCATGGTATGGGAGATGAAGCTA--ATGCCAAAGAT-TTGATTTCAGAA-TTCGATAAA 1365
| |||| |||||||||||||||| || | ||||| || || || ||| || ||||
Sbjct 1582 AATATGGAATGGGAGATGAAGCTAGCAT-C-AAAGAAGTT-ATATCCGAAGTT-GATACC 1637
Query 1366 AACAACGATGGAAAAATAGACTATGAGGAGTTTTGTACGATGATGAGAAATGGCATCTTG 1425
|||| ||||||| |||| ||| |||||| ||||| |||||||||||| |||| |
Sbjct 1638 GACAATGATGGAAGAATAAACTTTGAGGAATTTTGCGCGATGATGAGAAGCGGCACCACA 1697
Query 1426 CAACCACAAGGGAAAC 1441
|| |||||||||||||
Sbjct 1698 CAGCCACAAGGGAAAC 1713
Score = 239 bits (129), Expect = 6e-62
Identities = 135/138 (98%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1526 ACAAAGCATTCCAACACTTTGATAAAGACAACAGCGGGCACATAACTAGAGATGAGTTGG 1585
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1507 ACAAAGCATTCCAACACTTTGATAAAGACAATAGCGGGCACATAACTAGGGATGAGTTGG 1566
Query 1586 AAAGTGCAATGAAAGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAGTTATATCCG 1645
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 AAAGTGCCATGAAAGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAGTTATATCCG 1626
Query 1646 AAGTTGATACCGACAATG 1663
||||||||||||||||||
Sbjct 1627 AAGTTGATACCGACAATG 1644
> Ahg943245 jgi|Araly1|943245|scaffold_603789.1
Length=1649
Score = 741 bits (401), Expect = 0.0
Identities = 1010/1289 (78%), Gaps = 101/1289 (8%)
Strand=Plus/Plus
Query 190 AAAGAAGCTGTGAAGACAGAGATTCAAATCATGGATCATGTT-TCAGGACAGCCTAACAT 248
|||||| | |||||| ||||||||| || ||| | ||| || || ||||| || |||||
Sbjct 397 AAAGAAAATTTGAAGAGAGAGATTCAGATAATGCAGCAT-TTGTCTGGACAACCAAACAT 455
Query 249 CGTACAGATCAAAGGTTCCTACGAAGATAATA-ATTCTATACACATT-GTAATGGAATTG 306
|| ||||||||||| | || || ||| | | | ||| | || || |||||||| |||
Sbjct 456 TGTTGAGATCAAAGGTGCTTATGAGGAT-AGACAGTCTGTGCA-TTTGGTAATGGAGTTG 513
Query 307 TGTGGTGGTGGTGAGTTATTCGACAAGATCGATGCTTTGGTCAAGTCTCATAGCT-ATTA 365
|||| |||||||||||| || || || || || | || |||| || | ||||
Sbjct 514 TGTGCTGGTGGTGAGTTGTTTGA-TAG---GA----TT-AT--AG-CTCA-AGGTCATTA 560
Query 366 CTCTGAGAAAGATGCTGCTGGAATCTTTAGGTCTATTGTGAATGCTGTGAAGATTTGTCA 425
|||||||| || ||||||||| ||| ||||||| |||||||||| ||| ||||||||||
Sbjct 561 CTCTGAGAGAGCTGCTGCTGGTATCATTAGGTCAATTGTGAATGTTGTTCAGATTTGTCA 620
Query 426 TTCT-TTGGATGTCG-TTCATCGTGATCTCAAGCCTGAGAACTTCTTGTTCTCTAGTAAA 483
|| | || ||| | ||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 621 TT-TGAAGGGTGT-GATTCATCGAGATCTCAAGCCTGAGAATTTCTTGTTCTCGAGTAAA 678
Query 484 GATGAGAATGCTATGCTTAAAGCT-ATCGATTTCGGG-TGTTCTG-TTTACATCAAAGAA 540
|| |||||||| |||||||||| | | |||||||||| || || | || |||| |||||
Sbjct 679 GAGGAGAATGCAATGCTTAAAG-TAACCGATTTCGGGTTG-TCCGCGTT-CATCGAAGAA 735
Query 541 GGGAAAACTT-TTGAGAGA-GTTGTTGGAAGTAAATACTACATTGCTCCTGAAGTATTAG 598
|||||| || || || || ||||| || |||||| |||||||||||||||||
Sbjct 736 -GGAAAAGTTCACCAG-GATGTAGTTGGGAGCCCTTACTACGTTGCTCCTGAAGTATTA- 792
Query 599 AGG-GAAGCTATGGGAAAGAAATCGACATTTGGAGTGCTGGTGTTATTTTATACATCCTA 657
||| |||| || |||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 793 AGGCGAAGTTACGGGAAAGAAATCGATATTTGGAGTGCAGGTGTCATTTTATACATCCTA 852
Query 658 CTGAGCGGCGTACCGCCATTTCAAACTGGAATTGAATCTATAATTGTG-TCTACTCTTTG 716
|| ||||| || || || ||| ||| || | | || | | | | | | || |
Sbjct 853 CTCAGCGGTGTGCCTCC-TTT----TTGG-GCTG-A-CAATGA--G-GATGGAATATTCG 901
Query 717 TATTGTAGATGCTGAGATTAAAGAATGCAG-GCTTGATTTTGAGAGCCAACCATGGCCTT 775
||| |||| || | |||| || | ||||| |||| ||||||||||||||||
Sbjct 902 --TTG-AGATTCT---A--AAAG---GC-GAAATTGATGTTGAAAGCCAACCATGGCCTT 949
Query 776 -TGATATCTTTTAAAGCG-AAGCACCTTATCGGGAAGATGCTCACCAAAAAACCGAAGGA 833
| |||||| | ||| ||| | ||| | | |||||||| |||||| | ||||| ||
Sbjct 950 CT-ATATCTGAGAGCGCGAAAG-ATCTTGTTAGAAAGATGCTAACCAAAGACCCGAA-GA 1006
Query 834 -ACGAATCTCTGCTGCAGATGTTCTTGAACATCCATGGATGAAA---AGCGAAGCTCCAG 889
||||||| | |||||| | |||||||||||||| ||||| ||| | ||||| || |
Sbjct 1007 GACGAATCACGGCTGCACAGGTTCTTGAACATCCTTGGATCAAAGGGGGAGAAGCACCGG 1066
Query 890 ATAAGCCTATTGATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGC 949
| ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1067 ACAAGCCTATTGATAGCACTGTGTTATCCCGTATGAAGCAATTCCGAGCAATGAACAAGC 1126
Query 950 TTAAGAAGCTTGCTCTTAAGGTTATTGCGGAGGGTCTATCGGAAGAGGAGATCAAAGGTC 1009
|||||||||| ||||| ||| ||| |||||| ||||||| |||||||||||||||||||
Sbjct 1127 TTAAGAAGCTAGCTCTAAAGATTAGCGCGGAGAGTCTATCAGAAGAGGAGATCAAAGGTC 1186
Query 1010 TTAAAACCATGTTTGAGAATATGGATATGGACAAAAGCGGGTCAATCACTTATGAAGAAC 1069
||||||||||||||| ||||||||||| | | ||||||| |||||||||||||| |||
Sbjct 1187 TTAAAACCATGTTTGCGAATATGGATACCAATAGAAGCGGGACAATCACTTATGAACAAC 1246
Query 1070 TCAAAA-TGGGGCTGAA-TAGACAT-GGCTCTAAACTCTCTGAGACTGAAGTTAAGCAAC 1126
|||||| |||| || || ||||| | || | || | ||||||| ||||||||||||||||
Sbjct 1247 TCAAAACTGGG-CT-AAGTAGACTTAGG-TATAGATTCTCTGAAACTGAAGTTAAGCAAC 1303
Query 1127 TCATGGAAGCAGTGAGTGCTGATGTTGATGGGAATGGAACAATTGACTAC-ATAGAGTTT 1185
|||||||||| | | ||||||| ||||| |||||||||||||||||| || ||||||
Sbjct 1304 TCATGGAAGC-G-G----CTGATGTGGATGGTAATGGAACAATTGACTACTAT-GAGTTT 1356
Query 1186 ATCTCAGCGACGATGCATAGACACCGTTTGGAACGAGATGAACATTTATACAAAGCATTC 1245
||||| ||||| ||||||||| || || || |||||||| ||| || |||||||||||
Sbjct 1357 ATCTCTGCGACAATGCATAGATACAAATTAGATCGAGATGAGCATGTACACAAAGCATTC 1416
Query 1246 CAATACTTTGATAAAGACGG-AAGCGGGCACATAACGAAGGAGGAAGT-GGAGA-TAG-C 1301
||| |||||||||||||| || |||||||||||| | ||| || || ||| | | | |
Sbjct 1417 CAACACTTTGATAAAGACAACAA-CGGGCACATAACTAGGGATGA-GTTGGAAAGT-GTC 1473
Query 1302 AATGAAAGAGCATGGTATGGGAGATGAAGCTA--ATGCCAAAGAT-TTGATTTCAGAA-T 1357
| |||| || |||| |||||||||||||||| || | ||||| || || || ||| |
Sbjct 1474 A-TGAAGGAATATGGAATGGGAGATGAAGCTAGCAT-C-AAAGAAGTT-ATATCCGAAGT 1529
Query 1358 TCGATAAAAACAACGATGGAAAAATAGACTATGAGGAGTTTTGTACGATGATGAGAAATG 1417
| |||| |||| |||||||||||| ||| |||||| |||||| || ||||||||| |
Sbjct 1530 T-GATACCGACAATGATGGAAAAATAAACTTTGAGGAATTTTGTGCGGTGATGAGAAGCG 1588
Query 1418 GCATCTTGCAACCACAAGGGAAACT-TTT 1445
||| | |||||| |||||||||| |||
Sbjct 1589 GCACCACACAACCAAAAGGGAAACTGTTT 1617
Score = 228 bits (123), Expect = 1e-58
Identities = 134/139 (96%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1526 ACAAAGCATTCCAACACTTTGATAAAGACAACAGCGGGCACATAACTAGAGATGAGTTGG 1585
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1406 ACAAAGCATTCCAACACTTTGATAAAGACAACAACGGGCACATAACTAGGGATGAGTTGG 1465
Query 1586 AAAGTG-CAATGAAAGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAGTTATATCC 1644
|||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 AAAGTGTC-ATGAAGGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAGTTATATCC 1524
Query 1645 GAAGTTGATACCGACAATG 1663
|||||||||||||||||||
Sbjct 1525 GAAGTTGATACCGACAATG 1543
> Ahg945969 jgi|Araly1|945969|scaffold_702198.1
Length=1695
Score = 712 bits (385), Expect = 0.0
Identities = 1044/1344 (78%), Gaps = 117/1344 (9%)
Strand=Plus/Plus
Query 142 TACGCTTGCAAATCCATACCT-AAGA-GAACTCTAAGCAGCG-AAG-AAGAAAAAGAAGC 197
|||||||||||||| ||| || |||| ||| |||| | | | ||| |||| | ||| |
Sbjct 392 TACGCTTGCAAATCAATA-CTCAAGAGGAA-ACTAA-C-GAGAAAGCAAGACAGAGATGA 447
Query 198 TGTGAAGACAGAGATTCAAATCATGGATCATGTT-TCAGGAC-AGCCTAACATCGTACAG 255
|||||||| ||||||||| || ||| | ||| || || |||| || ||||| || ||
Sbjct 448 TGTGAAGAGAGAGATTCAGATAATGCAGCAT-TTGTCTGGACAAG-AGAACATTGTTGAG 505
Query 256 ATCAAAGGTTCCTACGAAGATA-ATAATTCTATACACATT-GTAATGGAATTGTGTGGTG 313
||||| ||| |||| ||||||| | || || ||||| || || ||||| ||||||||||
Sbjct 506 ATCAAGGGTGCCTATGAAGATAGACAA-TCAATACA-TTTGGTGATGGAGTTGTGTGGTG 563
Query 314 GTGGTGAGTTATTCGACAAGATCGATGCTTTGGTCAAGTCTCATA-G-CTATTACTCTGA 371
|| |||| || || || || || || | || |||| | | | ||||||||||
Sbjct 564 GTAGTGAATTGTTTGA-TAG---GA----TT-AT--AG-CTCA-AGGAC-ATTACTCTGA 609
Query 372 GAAAG-ATGCTGCTGGAATCT-TTAGGTCTATTGTGAATGCTG-TGAAGATTTGTCATTC 428
||||| | |||||||| | | |||| || ||| |||||| || || | ||||||||||
Sbjct 610 GAAAGCA-GCTGCTGGTGT-TATTAGATCGATTTTGAATGTTGTTG-ACATTTGTCATT- 665
Query 429 TT-T-GGATGTCG-TTCATCGTGATCTCAAGCCTGAGAACTTCTTGTTCTCTAGTAAAGA 485
|| | ||| || | ||||||||||||| ||||||||||| |||||| || |||||| ||
Sbjct 666 TTATGGGA-GT-GATTCATCGTGATCTTAAGCCTGAGAATTTCTTGCTCGCTAGTACTGA 723
Query 486 TGAGAATGCTATGCTTAAAGCTATC-GATTTCGG-GTGTTCTGT-TTACATCAAAGAAGG 542
||||||||||||||||||||||| | ||||| || || ||||| || ||| |||||||
Sbjct 724 TGAGAATGCTATGCTTAAAGCTA-CTGATTTTGGATTG-TCTGTCTT-CATTGAAGAAGG 780
Query 543 GAAAACTTTTGAGAGAGT-T-GTTGGAAGTAAATACTACATTGCTCCTGAAGTATT-AGA 599
||||| ||| || || | | || |||||| ||||| |||||||||||||||| |||
Sbjct 781 GAAAA-TTTACAGGGA-TATAGTCGGAAGTGCTTACTATGTTGCTCCTGAAGTATTAAGA 838
Query 600 GGGAAGCTATGGGAAAGAAATCGACATTTGGAGTGCTGGTG-TTATTTTATACATCCTAC 658
|||| ||||| ||||||||||| ||||||||||| || | |||||||||||||| | |
Sbjct 839 -AGAAGTTATGGAAAAGAAATCGATATTTGGAGTGCAGG-GATTATTTTATACATCTTGC 896
Query 659 TGAGCGGCGTACCGCCATTTCAAACTGGAATTGAATCT-ATAATTGTGTCTACTCTTTGT 717
| | ||||| || || ||| ||| |||| || | || | | | | ||||
Sbjct 897 TCTGTGGCGTGCCTCC-TTT----TTGG-GCTGAAACTGAGAA--G-G-GGA-TATTTG- 944
Query 718 ATTGTAGATGCTGAGATTAAAGAATGCAGGCTTGATTTTGAGAGCCAACCATGG-CCTTT 776
| || |||| | | ||||| | | ||||||||||||||||||||||| ||| |
Sbjct 945 A-TG-AGAT--T---A-TAAAG-GGGGA-AATTGATTTTGAGAGCCAACCATGGCCCTCT 994
Query 777 GATATCTTTTAAAGC-GAAGCACCTTATCG-GGAAGATGCTCACCAAAAAACCGAAGGAA 834
|||||| | || ||| ||||| | | ||||| |||| || || | || ||| ||
Sbjct 995 -ATATCTGAGAGTGCTAAAG-ACCTTGT-GAGGAAGTTGCTTACTAAGGACCCTAAGCAA 1051
Query 835 CGAATCTCTGCTGCAGATGTTCTTGAACATCCATGGATGAAA--A-GCGAAGCTCCAGAT 891
|||||||| || ||| | | |||||||||||| ||||| ||| | | ||||| |||||
Sbjct 1052 CGAATCTCAGCGGCACAAGCTCTTGAACATCCTTGGATCAAAGGAGGAGAAGCACCAGAC 1111
Query 892 AAGCCTATTGATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGCTT 951
||||||||||||| | ||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1112 AAGCCTATTGATAGCGCTGTGTTATCCCGGATGAAGCAATTCCGAGCAATGAACAAGCTT 1171
Query 952 AAGAAGCTTGCTCTTAAGGTTATTGCGGAGGGTCTATCGGAAGAGGAGATCAAAGGTCTT 1011
|||||||| ||||||||||| ||||| ||| |||| ||||||||||| || |||||||||
Sbjct 1172 AAGAAGCTAGCTCTTAAGGTAATTGCAGAGAGTCTCTCGGAAGAGGAAATTAAAGGTCTT 1231
Query 1012 AAAACCATGTTTGAGAATATGGATATGGACAAAAGCGGGTCAATCACTTATGAAGAACTC 1071
||||||||||||| ||||||||||| || ||||| || |||||||||| ||||||||
Sbjct 1232 AAAACCATGTTTGCGAATATGGATACCGATAAAAGTGGAACAATCACTTACGAAGAACTG 1291
Query 1072 AAAATGGGGCTGAATAGACATGGCTCTAAACTCT-CTGA-GACTGAAGTTAAGCAACTCA 1129
|||| |||||| || || ||||||||||||| | || | ||||||| ||||||||||
Sbjct 1292 AAAACCGGGCTGGCTAAACTTGGCTCTAAACTCAAC-GAAG-CTGAAGTGAAGCAACTCA 1349
Query 1130 TGGAAGCAGTGAGTGCTGATGTTGATGGGAATGGAACAATTGACTACATAGAGTTTATCT 1189
||||||| | ||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct 1350 TGGAAGCCG------CTGATGTAGATGGTAATGGAACAATCGACTACATCGAGTTTATCT 1403
Query 1190 CAGCGACGATGCATAGACACCGTTTGGAACGAGATGAACATTTATACAAAGCATTCCAAT 1249
||| ||| ||||||||| || | ||||| || ||||| ||||||| |||||| |||||||
Sbjct 1404 CAGTGACAATGCATAGATACAGATTGGACCGGGATGAGCATTTATTCAAAGCCTTCCAAT 1463
Query 1250 ACTTTGATAAAGACGGA-AGCGGGCACATAACGAA-GGAGGAAGT-GGAGAT-AGCAATG 1305
|||| || |||||| | |||||| || || || ||| || || |||| | ||| |||
Sbjct 1464 ACTTCGACAAAGACA-ACAGCGGGTTTATCAC-AATGGATGA-GTTGGAG-TCAGCCATG 1519
Query 1306 AAAGAGCATGGTATGGGAGATGAAGCTA--ATGCCAAAGATTTGATTTCAGAATTCGATA 1363
|||||| ||||||||||||||||||||| || | ||||| | || | ||| ||||||
Sbjct 1520 AAAGAGTATGGTATGGGAGATGAAGCTAGCAT-C-AAAGAAGTCATAGCGGAAGTCGATA 1577
Query 1364 AAAACAACGATGGAAAAATAGACTATGAGGAGTTTTGTACGATGATGAGAAATGGCATCT 1423
| | || ||||||| |||| ||||||| || |||||| |||||||||||| ||| |||
Sbjct 1578 CAGATAATGATGGAAGAATAAACTATGAAGAATTTTGTGCGATGATGAGAAGTGGTATCA 1637
Query 1424 ---TGC-AACCACAAGGGAAACTT 1443
||| ||| |||||||||||||
Sbjct 1638 CACTGCCAAC-ACAAGGGAAACTT 1660
Score = 121 bits (65), Expect = 2e-26
Identities = 116/140 (83%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 1527 CAAAGCATTCCAACACTTTGATAAAGACAACAGCGGGCACATAACTA-GAGATGAGTTGG 1585
|||||| |||||| |||| || ||||||||||||||| || || | | ||||||||||
Sbjct 1450 CAAAGCCTTCCAATACTTCGACAAAGACAACAGCGGGTTTATCACAATG-GATGAGTTGG 1508
Query 1586 AAAGT--GCAATGAAAGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAGTTATATC 1643
||| || |||||||| ||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1509 --AGTCAGCCATGAAAGAGTATGGTATGGGAGATGAAGCTAGCATCAAAGAAGTCATAGC 1566
Query 1644 CGAAGTTGATACCGACAATG 1663
||||| ||||| || ||||
Sbjct 1567 GGAAGTCGATACAGATAATG 1586
> Ahg945962 jgi|Araly1|945962|scaffold_702191.1
Length=2647
Score = 121 bits (65), Expect = 2e-26
Identities = 116/140 (83%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 1527 CAAAGCATTCCAACACTTTGATAAAGACAACAGCGGGCACATAACTA-GAGATGAGTTGG 1585
|||||| |||||| |||| || |||||||||||| || || || | | ||||||||||
Sbjct 2398 CAAAGCCTTCCAATACTTCGACAAAGACAACAGCTGGTTTATCACAATG-GATGAGTTGG 2456
Query 1586 AAAGT--GCAATGAAAGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAGTTATATC 1643
||| || |||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 2457 --AGTCAGCCATGAAAGAATATGGTATGGGAGATGAAGCTAGCATCAAAGAAGTCATAGC 2514
Query 1644 CGAAGTTGATACCGACAATG 1663
||||| ||||| || ||||
Sbjct 2515 GGAAGTCGATACAGATAATG 2534
> Ahg354567 jgi|Araly1|354567|fgenesh1_pg.C_scaffold_7001740
Length=1191
Score = 121 bits (65), Expect = 2e-26
Identities = 116/140 (83%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 1527 CAAAGCATTCCAACACTTTGATAAAGACAACAGCGGGCACATAACTA-GAGATGAGTTGG 1585
|||||| |||||| |||| || ||||||||||||||| || || | | ||||||||||
Sbjct 966 CAAAGCCTTCCAATACTTCGACAAAGACAACAGCGGGTTTATCACAATG-GATGAGTTGG 1024
Query 1586 AAAGT--GCAATGAAAGAATATGGAATGGGAGATGAAGCTAGCATCAAAGAAGTTATATC 1643
||| || |||||||| ||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1025 --AGTCAGCCATGAAAGAGTATGGTATGGGAGATGAAGCTAGCATCAAAGAAGTCATAGC 1082
Query 1644 CGAAGTTGATACCGACAATG 1663
||||| ||||| || ||||
Sbjct 1083 GGAAGTCGATACAGATAATG 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64829596990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5