BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04745.1

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490111 jgi|Araly1|490111|fgenesh2_kg.6__3245__AT4G04745.1         713    0.0  


> Ahg490111 jgi|Araly1|490111|fgenesh2_kg.6__3245__AT4G04745.1
Length=482

 Score =  713 bits (386),  Expect = 0.0
 Identities = 449/479 (94%), Gaps = 6/479 (1%)
 Strand=Plus/Plus

Query  2    TCACTATATATATACTTCTGCTTCATGTTATTAGCTTACTCAATCTTTCTTCATACTACA  61
            ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||
Sbjct  1    TCACTATATATATACTTGTGCTTCATGTTATTAGCTTACTCAGTCTTTCTTGATACTTCA  60

Query  62   ATATATAGAATAAGAACTC-aaaaaaaG-AAGATAGAATCA-ATGGCATTAATGGTGAAG  118
            ||| |||||| |||||||| |||||||| |||||||||| | ||||||||||||||||||
Sbjct  61   ATACATAGAACAAGAACTCAAAAAAAAGAAAGATAGAAT-ATATGGCATTAATGGTGAAG  119

Query  119  AATAGTCCATACGAGTACACAAAGATGGAGAAAGAAGACCCTCAAGAGCTAATTCACAGA  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  120  AATAGTCCATACGAGTACACAAAGATGGAGAAAGAAGACCCTCAAGAGCTAATTCACAG-  178

Query  179  C-GAGCTCAATTTCTAATTCAAAAGGTTTTAGAACGAGCCGATAGCAAGACCAGACAGCA  237
            | ||||||||||||||||||| ||||||||||||||||| || | |||||||||||| ||
Sbjct  179  CAGAGCTCAATTTCTAATTCAGAAGGTTTTAGAACGAGCAGACAACAAGACCAGACAACA  238

Query  238  TCAACAGAGGAGGAGATCATCTGGACCGTTGATTATGATCAGAGTGGTTGGGATAAGAAT  297
             ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||
Sbjct  239  GCAACAGAGGAGGAGATTGTCTGGACCATTGATTATGATCAGAGTGGTTGGGATAAGAAT  298

Query  298  GAGAATTGGTAAGAAGCTCAGGAAGCTGAGGAAGACCAACACTTGTATATGCAATAATCT  357
            |||||||||||||||||| ||||||||||||||||  || | |||| | |||||||||||
Sbjct  299  GAGAATTGGTAAGAAGCTAAGGAAGCTGAGGAAGAGTAATAGTTGTGTCTGCAATAATCT  358

Query  358  TATCACTCGTTTCCTCAAATCTTTTAAACGTttcttgtgttcttcttcttcatcttcttc  417
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TATCTCTCGTTTCCTCAAATCTTTTAAACGTTTCTTGTGTTCTTCTTCTTCATCTTCTTC  418

Query  418  ttctcgaactatctctgatcttcctcctctcttctctcttcAAGTTTGATGAACTTGAT  476
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  419  TTCTCGAACTATCTCTGATCTTCCTCCTCTCTTCTCTCTTCAAGTTTGATGATCTTGAT  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21023729539


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5