BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04750.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895543 jgi|Araly1|895543|Al_scaffold_0006_3539 2278 0.0
Ahg490113 jgi|Araly1|490113|fgenesh2_kg.6__3247__AT4G04760.1 747 0.0
> Ahg895543 jgi|Araly1|895543|Al_scaffold_0006_3539
Length=1449
Score = 2278 bits (1233), Expect = 0.0
Identities = 1378/1450 (95%), Gaps = 2/1450 (0%)
Strand=Plus/Plus
Query 54 ATGGCGGAAGAATCTTTATTACCATCTCATACAGAAGATGTATCAGCTTCTCCTAATAAA 113
||||||||||||||| |||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 1 ATGGCGGAAGAATCTCTATTACTATCTCATACAGAAGTTTTATCAGATTCTCCTAATAAA 60
Query 114 TCTTCATCACTTCTGTCTGAAATATCAAATGCTTCCACGAGACCTTTTGTTCTTGCTTTC 173
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCTTCTTCACTTCTGTCTGAAATATCAAATGCCTCCACGAGACCTTTTGTTCTTGCTTTC 120
Query 174 ACTGTTGGTTCTTGTGGTGCCTTGAGCTTTGGATGCATTGTTGGATATACAGCTCCTACA 233
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTGTCGGTTCTTGTGGTGCCTTGAGCTTTGGATGCATTGTTGGATATACAGCTCCTACA 180
Query 234 CAGTCCAGTATCATGAAAGACTTGAATCTATCCATAGCTGAtttttcattttttGGATCG 293
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGACCAGTATCATGAAAGACTTGAATCTATCCATAGCTGATTTTTCATTTTTTGGATCG 240
Query 294 ATATTGACAGTGGGGCTAATCCTTGGAGCATTAATTTGTGGGAAATTGGCAGATTTGGTT 353
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATATTGACGGTGGGGCTAATCGTTGGAGCATTAATTTGTGGGAAATTGGCAGATTTGGTT 300
Query 354 GGTCGTGTCTATACGATATGGATTACAAACATTCTTGTTTTAATCGGCTGGTTAGCTATT 413
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GGTCGTGTCTACACGATATGGATTACAAACATTCTCGTTTTAATCGGCTGGTTAGCTATT 360
Query 414 GCATTTGCCAAGGATGTTCGGCTACTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTC 473
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GCATTTGCTAAGGATGTTTGGCTGCTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTC 420
Query 474 GGAATTAGCTCATATTTGGGACCTATTTACATTAGCGAGTTAGCACCAAGAAATTTGCGA 533
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 421 GGAATTAGCTCATATTTGGGACCTATTTACATCAGCGAGTTAGCACCAAGAAACTTGCGA 480
Query 534 GGAGCTGCTTCTTCGTTGATGCAGTTATTTGTCGGTGTGGGTCTATCGGCCTTTTATGCT 593
|||||||||||||| |||||||||||||| |||||||| ||| |||||| |||||||||
Sbjct 481 GGAGCTGCTTCTTCCTTGATGCAGTTATTCGTCGGTGTTGGTATATCGGTCTTTTATGCA 540
Query 594 CTCGGAACAGCCGTTGCTTGGCGCAGTTTAGCCATTTTAGGATCTATACCTTCTCTAGTG 653
|| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 541 CTTGGAACCGTCGTTGCTTGGCGCAATTTAGCCATTTTAGGATCTATACCTTCTCTATTG 600
Query 654 GTTCTGCCTCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGG 713
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTCTGCCTCTTCTTTTCTTCGTCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGG 660
Query 714 GAAAAGGAGGTTGAAGGGGTTTTATTAAGCTTGCGAGGAGCAAAATCTGATGTATCAGAT 773
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 661 GAAAAGGAGGTTGAGGGGGTTTTATTAAGCTTGCGAGGAGCAAAGTCTGATGTCTCCGAT 720
Query 774 GAAGCAGCAACGATATTAGAATATACAAAACATGTCGAACAACAAGACATCGATAGCCGC 833
||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 721 GAAGCAGCAGCGATATTAGAATACACAAAACATGTTGAACAACAAGACGTCGATAGCCGT 780
Query 834 GGTTTCTTCAAGTTGTTCCAGCGAAAATACGCGTTGCCACTAACTATTGGAGTTGTCCTT 893
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 781 GGTTTCTTCAAGTTGTTCCAGCGAAAATACGCGTTACCACTTACTATTGGAGTTGTTCTT 840
Query 894 ATATCTATGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGATACCATTTTC 953
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATATCTGTGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGATACCATTTTC 900
Query 954 ACCTCTACCGGTGTATCAAGTGACATTGGATTCATATTGACATCTATTGTTCAGATGACT 1013
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 901 ACCTCTACCGGTGTATCAAGTAACGTTGGATTCATATTGACATCTATTGTTCAGATGTTT 960
Query 1014 GGAGGCGTTTTAGGTGTTTTGCTTGTGGATATATCCGGAAGACGTTCTCTCCTACTGTTT 1073
|||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||
Sbjct 961 GGAGGCATTTTAGGTGTTTTGCTTATAGATATATCCGGAAGACGTTCTCTTTTACTGGTT 1020
Query 1074 TCTCAAGCTGGAATGTTCTTGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTGCAGAAG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTCAAGCTGGAATGTTCTTGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTGCAGAAG 1080
Query 1134 AACAATTGCTGGGAAACAGGAACACCAATAATGGCTCTCATTAGTGTTATGGTGTATTTT 1193
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 AACAATTGCTGGGAAAAAGGAACACCAATATTGGCTCTCATTAGTGTTATGGTGTATTTT 1140
Query 1194 GGATCATACGGATTAGGCATGGGACCAATACCATGGATCATAGCATCAGAGATTTACCCT 1253
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1141 GGATCATACGGATTAGGCATGGGACCAATACCGTGGATCATAGCATCAGAGATTTATCCA 1200
Query 1254 GTAGACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGGTCACCTCTATAAGCTCATGG 1313
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1201 GTAGACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGACCACCTCTATAAGCTCATGG 1260
Query 1314 CTCGTTACTTACTCCTTCAATTTTTTGCTTCAATGGAGTTCTACAGGAACGTTTATGATG 1373
|||||||||||||| |||||||| ||||||||||||||| | |||||||| |||||||||
Sbjct 1261 CTCGTTACTTACTCTTTCAATTTCTTGCTTCAATGGAGTCCCACAGGAACATTTATGATG 1320
Query 1374 TTTGCCACTGTGATGGGTCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGAGACCAAA 1433
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTTGCCACTGTGATGGGCCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGAGACCAAA 1380
Query 1434 GGCAAATCTTTAGAAGAAATTCAATCTGCT-TTTACTGATTCTACTTCTGAAGATTCTAC 1492
|||||||||||||| |||||||| |||| | |||||||||||| || |||||||||||||
Sbjct 1381 GGCAAATCTTTAGAGGAAATTCAGTCTG-TGTTTACTGATTCTCCTCCTGAAGATTCTAC 1439
Query 1493 AATTTTCTAA 1502
||||||||||
Sbjct 1440 AATTTTCTAA 1449
> Ahg490113 jgi|Araly1|490113|fgenesh2_kg.6__3247__AT4G04760.1
Length=1470
Score = 747 bits (404), Expect = 0.0
Identities = 654/770 (85%), Gaps = 36/770 (5%)
Strand=Plus/Plus
Query 369 ATATGGATTACAAACATTCTTGTT-TTAATCGGCTGGTTAGCTATTGCATTTGCCAAGGA 427
|||||||| |||||||| | | || |||||||| ||||| ||||| |||||||||||||
Sbjct 289 ATATGGATCACAAACATAC-TCTTCTTAATCGGTTGGTTCGCTATCGCATTTGCCAAGGG 347
Query 428 TGTTCGGCTACTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTCGGAATTAGC-TCAT 486
|||| |||| || ||||||||||||||| |||||||||||||| |||| |||||| | ||
Sbjct 348 TGTTTGGCTGCTTGATCTTGGAAGGTTACTGCAAGGGATCTCGATCGGCATTAGCGT-AT 406
Query 487 ATTTGGGACCTATTTACATTAGCGAGTTAGCACCAAGAAATTTGCGAGGAGCTGCTTCTT 546
|||||||||| ||||||| | |||| ||||||||||||| |||||||||||||||||||
Sbjct 407 ATTTGGGACCGGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGCTTCTT 466
Query 547 CGTTGAT-GCAGTTATTTGTCGGTGTGGGTCTATCGGCCTTTTATGCTCTCGGAACAGCC 605
| || | ||||||||| | |||||| ||| |||||| ||||||||| || ||||| | |
Sbjct 467 CCTT-CTCGCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAACCGTC 525
Query 606 GTTGCTTGGCGCAGTTTAGCCATTTTAGGATCTATACCTTCTCTAGTGGTTCTGCCTCTT 665
|| | ||||||| |||||| ||||| |||||||||||||||||| ||||| ||||||||
Sbjct 526 GTCACATGGCGCAATTTAGCAATTTTGGGATCTATACCTTCTCTAATGGTTATGCCTCTT 585
Query 666 CTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGGGAAAAGGAGGTT 725
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 586 CTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGGGAAAAGGAAGTT 645
Query 726 GAAGGGGTTTTATTAAGCTTGCGAGGAGCAAAATCTGATGTATCAGATGAAGCAGCA-AC 784
|||| ||||| |||||| | ||||||||||||||||||||| |||||||| ||||| |
Sbjct 646 GAAGCAGTTTTGTTAAGCCTACGAGGAGCAAAATCTGATGTAACAGATGAAACAGCAGA- 704
Query 785 GATATTAGAATATACAAAACATGTCGAACAACAAGAC-AT--CGATAGCCGCGGTTTCTT 841
|||||||||||||||| | ||||| |||||||| | || |||| | | ||||||||
Sbjct 705 GATATTAGAATATACAGAGCATGTTAAACAACAACAAGATGTCGAT-G--GTGGTTTCTT 761
Query 842 CAAGTTGTTCCAGCGAAAATACGCGTTGC-CACTAACTATTGGAGTTGTCCTTATATC-T 899
|| | | || ||||||||||| ||||| | |||| |||||||||||||| |||||| | |
Sbjct 762 CACGCTATTTCAGCGAAAATATGCGTT-CTCACTTACTATTGGAGTTGTTCTTATAGCCT 820
Query 900 ATGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGA-TACCATTTTCACCTC 958
|||||||||||||||||||||| || ||| ||||||||||||| | |||||||||||||
Sbjct 821 -TGCCTCAGCTTGGAGGTCTTAACGGCTATTCTTTTTACACCGACT-CCATTTTCACCTC 878
Query 959 TACCGGTGTATCAAGTGACATT-GGATTCATATTGACATCTATTGTTCAGATGACTGGAG 1017
|||||||||||| |||||| || |||||||||| ||||||| ||||||||||| |||||
Sbjct 879 TACCGGTGTATCGAGTGAC-TTCGGATTCATATCGACATCTGTTGTTCAGATGTTTGGAG 937
Query 1018 GCGTTTTAGGTGTTTTGCTTGTGGATATATCCGGAAGACGTTCTCTCCTACTGTTTTCTC 1077
|| |||||||| | ||||||| ||| |||| |||||||||| || || |
Sbjct 938 GCATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTT-TC-CC-A---------- 984
Query 1078 AAGCTGGAATGTTCTTGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTG 1127
| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 985 A-GCTGGAATGTTCTTGGGTTGTCTTGCCACAGCCATTTCATTCTTCTTG 1033
Score = 464 bits (251), Expect = 8e-130
Identities = 328/364 (90%), Gaps = 9/364 (2%)
Strand=Plus/Plus
Query 1138 ATTGCTGGGAAACAGGAACACCAATAATGGCTCTCATTAGTGTTATGGTGTATTTTGGAT 1197
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1109 ATTGCTGGGAAACAGGAACACCAGTCTTGGCTCTCATTAGTGTTATGGTGTATTTTGGAT 1168
Query 1198 CATACGGAT-TAGGCATGGGACCAATACCATGGATCATAGCATCAGAGATTTACCCTGTA 1256
||||||||| | || |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1169 CATACGGATCT-GGTATGGGACCAATACCGTGGATCATAGCATCAGAGATTTATCCAGTA 1227
Query 1257 GACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGGTCACCTCTATAAGCTCATGGCTC 1316
|| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1228 GATGTGAAGGGAGCAGCAGGAACAATGTGTAACTTGGTCAGCTCTATAAGCTCATGGCTC 1287
Query 1317 GTTACTTACTCCTTCAATTTTTTGCTTCAATGGAGTTCTACAGGAACGTTTATGATGTTT 1376
||| |||| ||||||| ||| |||||||||||||| || |||||||| ||| ||||||||
Sbjct 1288 GTTGCTTATTCCTTCAGTTTCTTGCTTCAATGGAGCTCCACAGGAACATTTCTGATGTTT 1347
Query 1377 GCCACTGTGA-TGGGTCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGAGACCAAAGG 1435
||||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1348 GCCACAGTGGCTGGC-CTTGGATTTGTCTTCATAGCCAAGCTTGTTCCAGAGACCAAAGG 1406
Query 1436 CAAATCTTTAGAAGAAATTCAATCTGCTTTT-ACTGATTCTACTTCTGAAGATTCTACAA 1494
||||||| ||||||| ||||||||| ||||| ||||||||| || | ||||||||||||
Sbjct 1407 CAAATCTCTAGAAGAGATTCAATCT-CTTTTCACTGATTCTCCT-C--AAGATTCTACAA 1462
Query 1495 TTTT 1498
||||
Sbjct 1463 TTTT 1466
Score = 261 bits (141), Expect = 1e-68
Identities = 200/228 (88%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 116 TTCATCACTTCTGTCTGAAATATCAAATGCTTCCACGAGACCTTTTGTTCTTGCTTTCAC 175
||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 60 TTCTTCACTTGTGTCTGAAATATCAAATGCATGCACGAGACCTTTTGTTCTTGCTTTCAC 119
Query 176 TGTTGGTTCTTGTGGTGCCTTGAGC-TTTGGATGCATTGTTGGATATACAGCTCCTACAC 234
||| |||||||| || ||||| || |||||||||||| | |||||| | ||||| ||||
Sbjct 120 TGTCGGTTCTTGCGGCGCCTTT-GCCTTTGGATGCATTATCGGATATTCGGCTCCGACAC 178
Query 235 AGTCCAGTATCATGAAAGACTTGAATCTATCCATAGCTGAtt---t-ttcattttttGGA 290
|| ||||||||||||||||||||||||| |||||||||||| | |||| | ||||||
Sbjct 179 AGACCAGTATCATGAAAGACTTGAATCTCTCCATAGCTGATGCAATATTCACTATTTGGA 238
Query 291 TCGATATTGACAGTGGGGCTAATCCTTGGAGCATTAATTTGTGGGAAA 338
|| |||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct 239 TCAATATTGACGGTGGGGTTAATCCTTGGAGCATTAATCTGTGGGAAA 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5