BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04760.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490113 jgi|Araly1|490113|fgenesh2_kg.6__3247__AT4G04760.1 1576 0.0
Ahg895543 jgi|Araly1|895543|Al_scaffold_0006_3539 1253 0.0
> Ahg490113 jgi|Araly1|490113|fgenesh2_kg.6__3247__AT4G04760.1
Length=1470
Score = 1576 bits (853), Expect = 0.0
Identities = 954/1003 (95%), Gaps = 5/1003 (0%)
Strand=Plus/Plus
Query 31 tcttctacttcttcttcttcttcACTTTTGTCTGAAATATCAAATGCATGCACGAGACCT 90
|||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 43 TCTTCTTCTTCTTCTTTTTCTTCACTTGTGTCTGAAATATCAAATGCATGCACGAGACCT 102
Query 91 TTTGTTCTTGCTTTCATTGTCGGTTCTTGCGGCGCCTTTGCCTTTGGATGCATTATTGGA 150
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 103 TTTGTTCTTGCTTTCACTGTCGGTTCTTGCGGCGCCTTTGCCTTTGGATGCATTATCGGA 162
Query 151 TATTCGGCTCCGACACAAACAAGTATCATGAAAGACTTGAATCTCTCCATAGCTGATGCA 210
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 163 TATTCGGCTCCGACACAGACCAGTATCATGAAAGACTTGAATCTCTCCATAGCTGATGCA 222
Query 211 ATATTCACTATTTGGATCGATATTGACGGTGGGGTTAATCCTTGGAGCATTAATCTGTGG 270
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATATTCACTATTTGGATCAATATTGACGGTGGGGTTAATCCTTGGAGCATTAATCTGTGG 282
Query 271 GAAACTATATGGATCACAAACATCCTCTT-TGTAATCGGATGGTTCGCTATTGCATTTGC 329
||||||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||
Sbjct 283 GAAACTATATGGATCACAAACATACTCTTCT-TAATCGGTTGGTTCGCTATCGCATTTGC 341
Query 330 CAAGGGTGTTTGGCTGCTTGATCTCGGAAGGTTACTACAAGGGATCTCGATCGGAATTAG 389
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 342 CAAGGGTGTTTGGCTGCTTGATCTTGGAAGGTTACTGCAAGGGATCTCGATCGGCATTAG 401
Query 390 CGTATATTTGGGACCAGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGC 449
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CGTATATTTGGGACCGGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGC 461
Query 450 TTCTTCCTTCGCGCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAAC 509
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTCTTCCTTCTCGCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAAC 521
Query 510 CATCGTTGCCTGGCGCAATTTAGCCATTTTGGGATGTATACCTTCTCTAATGGTTCTGCC 569
| |||| | |||||||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct 522 CGTCGTCACATGGCGCAATTTAGCAATTTTGGGATCTATACCTTCTCTAATGGTTATGCC 581
Query 570 TCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGAGAAATGGA 629
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 582 TCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGGGAAAAGGA 641
Query 630 AGTTGAAGCAGTTTTGTTAAGCCTGCGAGGAGAAAAATCTGATGTATCAGATGAAGCAGC 689
|||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||
Sbjct 642 AGTTGAAGCAGTTTTGTTAAGCCTACGAGGAGCAAAATCTGATGTAACAGATGAAACAGC 701
Query 690 AGAGATATTAGAATATACAGAACATGTTAAACAACAACAAGACATCGATGACCGCGGTTT 749
||||||||||||||||||||| |||||||||||||||||||| |||||| | |||||
Sbjct 702 AGAGATATTAGAATATACAGAGCATGTTAAACAACAACAAGATGTCGATG---GTGGTTT 758
Query 750 CTTCAAGCTATTTCAGCGAAAATATGCATTCTCACTTACTATTGGAGTTGTTCTTATAGC 809
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 759 CTTCACGCTATTTCAGCGAAAATATGCGTTCTCACTTACTATTGGAGTTGTTCTTATAGC 818
Query 810 TTTGCCTCAGCTTGGAGGTCTTAACGGTTATTCTTTTTACACTGACTCCATTTTCATCTC 869
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 819 CTTGCCTCAGCTTGGAGGTCTTAACGGCTATTCTTTTTACACCGACTCCATTTTCACCTC 878
Query 870 TACCGGTGTATCGAGTGACTTTGGATTCATATCTACATCAGTTGTTCAGATGTTTGGAGG 929
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 879 TACCGGTGTATCGAGTGACTTCGGATTCATATCGACATCTGTTGTTCAGATGTTTGGAGG 938
Query 930 CATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTTTCTCAAGCTGGAATGTTCT 989
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 939 CATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTTTCCCAAGCTGGAATGTTCT 998
Query 990 TGGGTTGTCTTACCACAGCCATTTCATTCTTCTTGAAGGCATG 1032
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 999 TGGGTTGTCTTGCCACAGCCATTTCATTCTTCTTGAAGGCATG 1041
Score = 593 bits (321), Expect = 9e-169
Identities = 353/368 (96%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 1033 GAGAATCATTGCTGGGAAACAGGAACTCCTGTCTTGGCTCTCTTTAGTGTTATGGTGTAT 1092
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1102 GAGAATCATTGCTGGGAAACAGGAACACCAGTCTTGGCTCTCATTAGTGTTATGGTGTAT 1161
Query 1093 TTTGGATCATACGGTTCTGGTATGGGATCAATACCATGGATCATAGCATCAGAGATTTAT 1152
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1162 TTTGGATCATACGGATCTGGTATGGGACCAATACCGTGGATCATAGCATCAGAGATTTAT 1221
Query 1153 CCAGTAGATGTTAAGGGAGCAGCGGGAACAATGTGTAACTTGGTCAGCTCTATAAGCGCA 1212
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1222 CCAGTAGATGTGAAGGGAGCAGCAGGAACAATGTGTAACTTGGTCAGCTCTATAAGCTCA 1281
Query 1213 TGGCTTGTTGCTTATTCCTTCAGTTACTTGCTTCAATGGAGCTCCACAGGAACATTTCTG 1272
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1282 TGGCTCGTTGCTTATTCCTTCAGTTTCTTGCTTCAATGGAGCTCCACAGGAACATTTCTG 1341
Query 1273 ATGTTTGCCACAGTGGCTGGCCTTGGATTTGTGTTCATAGCCAAGCTTGTTCCAGAGACC 1332
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1342 ATGTTTGCCACAGTGGCTGGCCTTGGATTTGTCTTCATAGCCAAGCTTGTTCCAGAGACC 1401
Query 1333 AAAGGCAAATCTCTAGAAGAGATTCAATCTCTTTTCACTGATTCTCCTCCTCAAGATTCT 1392
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1402 AAAGGCAAATCTCTAGAAGAGATTCAATCTCTTTTCACTGATTCTCCTC---AAGATTCT 1458
Query 1393 ACAATTTT 1400
||||||||
Sbjct 1459 ACAATTTT 1466
> Ahg895543 jgi|Araly1|895543|Al_scaffold_0006_3539
Length=1449
Score = 1253 bits (678), Expect = 0.0
Identities = 1006/1157 (87%), Gaps = 52/1157 (4%)
Strand=Plus/Plus
Query 277 ATATGGATCACAAACATCCTC-TTTGTAATCGGATGGTTCGCTATTGCATTTGCCAAGGG 335
|||||||| |||||||| ||| ||| ||||||| ||||| |||||||||||||| ||||
Sbjct 316 ATATGGATTACAAACATTCTCGTTT-TAATCGGCTGGTTAGCTATTGCATTTGCTAAGGA 374
Query 336 TGTTTGGCTGCTTGATCTCGGAAGGTTACTACAAGGGATCTCGATCGGAATTAGCGT-AT 394
|||||||||||| ||||| ||||||||| | |||||||||||| ||||||||||| | ||
Sbjct 375 TGTTTGGCTGCTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTCGGAATTAGC-TCAT 433
Query 395 ATTTGGGACC-AGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGCTTCT 453
|||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 434 ATTTGGGACCTA-TTTACATCAGCGAGTTAGCACCAAGAAACTTGCGAGGAGCTGCTTCT 492
Query 454 TCCTTCGC-GCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAACCAT 512
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 493 TCCTT-GATGCAGTTATTCGTCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAACCGT 551
Query 513 CGTTGCCTGGCGCAATTTAGCCATTTTGGGATGTATACCTTCTCTAATGGTTCTGCCTCT 572
|||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct 552 CGTTGCTTGGCGCAATTTAGCCATTTTAGGATCTATACCTTCTCTATTGGTTCTGCCTCT 611
Query 573 TCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGAGAAATGGAAGT 632
|||||||||| ||||||||||||||||||||||||||||||| || || |||| ||| ||
Sbjct 612 TCTTTTCTTCGTCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGGGAAAAGGAGGT 671
Query 633 TGAAGCAGTTTTGTTAAGCCTGCGAGGAGAAAAATCTGATGTATCAGATGAAGCAGCAGA 692
||| | ||||| |||||| ||||||||| ||| |||||||| || |||||||||||||
Sbjct 672 TGAGGGGGTTTTATTAAGCTTGCGAGGAGCAAAGTCTGATGTCTCCGATGAAGCAGCAGC 731
Query 693 GATATTAGAATATACAGAACATGTTAAACAACAACAAGACATCGAT-GACCGCGGTTTCT 751
|||||||||||| ||| |||||||| |||||||| ||| ||||| | ||| |||||||
Sbjct 732 GATATTAGAATACACAAAACATGTTGAACAACAA---GACGTCGATAG-CCGTGGTTTCT 787
Query 752 TCAAGCTATTTCAGCGAAAATATGCATT-CTCACTTACTATTGGAGTTGTTCTTATAGCT 810
||||| | || ||||||||||| || || | |||||||||||||||||||||||||| ||
Sbjct 788 TCAAGTTGTTCCAGCGAAAATACGCGTTAC-CACTTACTATTGGAGTTGTTCTTATATCT 846
Query 811 TTGCCTCAGCTTGGAGGTCTTAACGGTTATTCTTTTTACACTGACT-CCATTTTCATCTC 869
|||||||||||||||||||||| |||||| |||||||||| || | ||||||||| |||
Sbjct 847 GTGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGA-TACCATTTTCACCTC 905
Query 870 TACCGGTGTATCGAGTGACTTTGGATTCATATCT-ACATC-AGTTGTTCAGATGTTTGGA 927
|||||||||||| ||| || |||||||||||| | ||||| | |||||||||||||||||
Sbjct 906 TACCGGTGTATCAAGTAACGTTGGATTCATAT-TGACATCTA-TTGTTCAGATGTTTGGA 963
Query 928 GGCATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTT-TCT----C-------- 974
|||||||||||| | ||||| | ||| |||| |||||||||| ||| |
Sbjct 964 GGCATTTTAGGTGTTTTGCTTATAGATATATCCGGAAGACGTTCTCTTTTACTGGTTTCT 1023
Query 975 -AAGCTGGAATGTTCTTGGGTTGTCTTACCA-CAGCCATTTCATTCTTCTTGAAGGCATG 1032
||||||||||||||||||||||||| | || |||||||||||||||||||| || |
Sbjct 1024 CAAGCTGGAATGTTCTTGGGTTGTCT-AGCAACAGCCATTTCATTCTTCTTGCAG--A-- 1078
Query 1033 GAGAATCA-TTGCTGGGAAACAGGAACTCCTGTCTTGGCTCTCTTTAGTGTTATGGTGTA 1091
|||| || ||||||||||| |||||| || | ||||||||| ||||||||||||||||
Sbjct 1079 -AGAA-CAATTGCTGGGAAAAAGGAACACCAATATTGGCTCTCATTAGTGTTATGGTGTA 1136
Query 1092 TTTTGGATCATACGG-TTCTGGTATGGGATCAATACCATGGATCATAGCATCAGAGATTT 1150
||||||||||||||| || || |||||| ||||||| ||||||||||||||||||||||
Sbjct 1137 TTTTGGATCATACGGATTA-GGCATGGGACCAATACCGTGGATCATAGCATCAGAGATTT 1195
Query 1151 ATCCAGTAGATGTTAAGGGAGCAGCGGGAACAATGTGTAACTTGGTCAGCTCTATAAGCG 1210
|||||||||| || || |||||||| |||||| ||||||||||| || ||||||||||
Sbjct 1196 ATCCAGTAGACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGACCACCTCTATAAGCT 1255
Query 1211 CATGGCTTGTTGCTTATTCCTTCAGTTACTTGCTTCAATGGAGCTCC-ACAGGAACATTT 1269
||||||| ||| |||| || |||| || ||||||||||||||| ||| ||||||||||||
Sbjct 1256 CATGGCTCGTTACTTACTCTTTCAATTTCTTGCTTCAATGGAG-TCCCACAGGAACATTT 1314
Query 1270 CTGATGTTTGCCACAGTGGCTGG-CCTTGGATTTGTGTTCATAGCCAAGCTTGTTCCAGA 1328
||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1315 ATGATGTTTGCCACTGTGA-TGGGCCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGA 1373
Query 1329 GACCAAAGGCAAATCTCTAGAAGAGATTCAATCTCT-TTTCACTGATTCTCCTCCTCAAG 1387
|||||||||||||||| |||| || ||||| ||| | ||| ||||||||||||||| |||
Sbjct 1374 GACCAAAGGCAAATCTTTAGAGGAAATTCAGTCTGTGTTT-ACTGATTCTCCTCCTGAAG 1432
Query 1388 ATTCTACAATTTTCTAA 1404
|||||||||||||||||
Sbjct 1433 ATTCTACAATTTTCTAA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5