BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04780.1

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg352398 jgi|Araly1|352398|fgenesh1_pg.C_scaffold_6002991           660    0.0  


> Ahg352398 jgi|Araly1|352398|fgenesh1_pg.C_scaffold_6002991
Length=420

 Score =  660 bits (357),  Expect = 0.0
 Identities = 399/420 (95%), Gaps = 0/420 (0%)
 Strand=Plus/Plus

Query  75   ATGGATATAATCTCACAGTTGCAAGAACAAGTGAATACGATTGCTGCTATCACTTTCAAT  134
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATATAATCTCACAGTTGCAAGAGCAAGTGAATACGATTGCTGCTATCACTTTCAAT  60

Query  135  GCTTTTGGGACACTGCAAAGGGATGCACCACCAGTCCAGCTTTCACCTAATTATCCTGAA  194
            |||||||||||||| |||||||||||||| || |||||||||||||||||||||||| ||
Sbjct  61   GCTTTTGGGACACTCCAAAGGGATGCACCTCCTGTCCAGCTTTCACCTAATTATCCTCAA  120

Query  195  CCACCCGCTACAACTACGGTTACTGATGATGCTACGCCTTTTCCTGAGCAACCTAAGCAG  254
            ||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||
Sbjct  121  CCACCCGCTACAACTACGGCTGTTGATGACGCTACGCCTTTTCCTGAGCAACCTAAGCAG  180

Query  255  CTCAGTGCTGGCTTAGTTAAGGCTGCTAAACAGTTTGATGCTTTGGTTGCTGCACTTCCT  314
            |||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  181  CTCAGTGCCGGTTTAGTTAAGGCTGCTAAACAGTTTGATGCTTTGGTTGCAGCTCTTCCT  240

Query  315  TTGTCAGAAGGTGGTGAAGGTGCTCAGCTCAAAAGAATCGCTGAACTCCAGGTGGAAAAT  374
            ||||||||||| |||||||  ||||||||||||||||||||| |||||||||||||||||
Sbjct  241  TTGTCAGAAGGAGGTGAAGAAGCTCAGCTCAAAAGAATCGCTCAACTCCAGGTGGAAAAT  300

Query  375  GATCTTGTTGGTCAAGAACTCCAAAAGCAACTAGAGGCTGCAGAGAAGGAGCTAAAGCAA  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GATCTTGTTGGTCAAGAACTCCAAAAGCAACTAGAGGCTGCAGAGAAGGAGCTAAAGCAA  360

Query  435  GTACAAGAGCTGTTTGGACAAGCTGCTGACAATTGCCTGAACATGAAGAAACCTGAATGA  494
            || |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct  361  GTCCAAGAGCTATTTGGACAAGCTGCAGACAGTTGCCTGAACATGAAGAAACCTGAATGA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23712454374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5