BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04800.1

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327414 jgi|Araly1|327414|fgenesh1_pm.C_scaffold_6002634           691    0.0  


> Ahg327414 jgi|Araly1|327414|fgenesh1_pm.C_scaffold_6002634
Length=828

 Score =  691 bits (374),  Expect = 0.0
 Identities = 396/407 (97%), Gaps = 0/407 (0%)
 Strand=Plus/Plus

Query  149  ATGGCGGCTCCGGGATCGGTTCAGAAAGGAGATGAAGAGTGGCGTGCGATTCTTTCACCT  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGGCTCCGGGATCGGTTCAGAAAGGAGATGAAGAGTGGCGTGCGATTCTTTCACCT  60

Query  209  GAACAGTTTCGGATTCTTCGTCAAAAGGGCACTGAATATCCAGGAACAGGGGAATATGTC  268
            ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   GAACAGTTTAGGATTCTTCGTCAAAAGGGCACTGAATATCCAGGAACAGGAGAATATGTC  120

Query  269  AACTTCGACAAGGAAGGAGTTTACGGTTGTGTAGGATGCAATGCTCCTCTTTATAAATCC  328
            ||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct  121  AACTTCGACAAAGAAGGAATTTACGGTTGTGGAGGATGTAATGCTCCTCTTTATAAATCC  180

Query  329  ACCACAAAGTTCAACGCTGGTTGTGGCTGGCCAGCTTTCTTTGAAGGAATCCCCGGTGCC  388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ACCACAAAGTTCAACGCTGGTTGTGGCTGGCCAGCTTTCTTTGAAGGAATCCCCGGTGCC  240

Query  389  ATTACCCGAACGACAGACCCAGATGGGAGAAGAATAGAGATCAACTGTGCAACATGTGGT  448
            |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  241  ATTACCCGAATGTCAGACCCAGATGGGAGAAGAACAGAGATCAACTGTGCAACATGTGGT  300

Query  449  GGACATCTTGGTCATGTTTTCAAAGGAGAAGGTTTCGCTACTCCAACCGATGAACGCCAT  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGACATCTTGGTCATGTTTTCAAAGGAGAAGGTTTCGCTACTCCAACCGATGAACGCCAT  360

Query  509  TGCGTGAACAGCGTTTCGCTTAAGTTCACACCCGCAGCGTCTTCCTT  555
            ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  361  TGCGTGAACAGCGTTTCACTTAAGTTCACACCCGCAACGTCTTCCTT  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30574579434


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5