BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04830.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490118 jgi|Araly1|490118|fgenesh2_kg.6__3252__AT4G04830.1 771 0.0
Ahg327414 jgi|Araly1|327414|fgenesh1_pm.C_scaffold_6002634 490 6e-138
Ahg354595 jgi|Araly1|354595|fgenesh1_pg.C_scaffold_7001768 231 4e-60
> Ahg490118 jgi|Araly1|490118|fgenesh2_kg.6__3252__AT4G04830.1
Length=551
Score = 771 bits (417), Expect = 0.0
Identities = 511/554 (92%), Gaps = 15/554 (3%)
Strand=Plus/Plus
Query 48 CGGCTTCTCCGTTGGTGGTTCAGAAAACAGAGGAGGAGTGGCGTGCGGTTCTTTCTCCGG 107
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 8 CGGCTTCTGCGTTGGTGGTCCAAAAAACAGAGGAGGAGTGGCGTGCGGTTCTTTCTCCTG 67
Query 108 AGCAGTTTCGTATTCTTCGTCAAAAAGGCACTGAAAAGCCAGGAACTGGAGAATATGACA 167
|||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 68 AGCAGTTTCGGATTCTTCGTCAAAAAGGCACCGAAAAACCGGGAACTGGAGAATATGACA 127
Query 168 AGTTTTTCGAGGAAGGAATCTTCGATTGCGTAGGATGCAAGACTCCTCTTTATAAATCAA 227
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 128 AGTTTTTCGAGGAAGGAATCTTCTCTTGCGTCGGATGCAAGACTCCTCTTTATAAATCAG 187
Query 228 CCACGAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGAC-TCCCTGGTGCC 286
|| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 188 TAACAAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGACTTCCC-GGTGCC 246
Query 287 ATAAACCGAACCCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCTGCGTGCGAT 346
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 247 ATTAACCGAACCCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCAGCGTGCGAT 306
Query 347 GGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTACGGTAATCCAACCGATGAACGTCAT 406
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 307 GGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTATGGTACTCCAACCGATGAACGCCAT 366
Query 407 TGCGTTAACAGTGTTTCGATCAGTTTTAACCCGGCAAAATCTTCCTCTATAATCTGAGGA 466
||||||||||| |||||||||||||| ||||| |||||| |||||||| | |||||||||
Sbjct 367 TGCGTTAACAGCGTTTCGATCAGTTTCAACCCTGCAAAACCTTCCTCTGTTATCTGAGGA 426
Query 467 TATGATTGATCGATCATACAACATCTTCTAAT--C--AGATTGTGTTGTTAAAATTGTCA 522
| |||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 427 T-TGATTGATCGATCATACAACATCTTCTAATTACTCAGATTGTGTTGTTA---TTGTCA 482
Query 523 TCATGTAGTGAATATGCACTTTCTGTGGTGGTCAATATAATGCAACAAATAATAAGACTC 582
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 483 TCATGTAGTGAATATGCACTTTCTGTGGTGGTCAAT-----GCAACAGATAATAAGACTG 537
Query 583 ATTAGATATTGGAT 596
||||||||||||||
Sbjct 538 ATTAGATATTGGAT 551
> Ahg327414 jgi|Araly1|327414|fgenesh1_pm.C_scaffold_6002634
Length=828
Score = 490 bits (265), Expect = 6e-138
Identities = 346/385 (90%), Gaps = 6/385 (2%)
Strand=Plus/Plus
Query 82 GGAGTGGCGTGCGGTTCTTTCTCCGGAGCAGTTTCGTATTCTTCGTCAAAAAGGCACTGA 141
|||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 447 GGAGTGGCGTGCAGTTCTTTCTCCTGAGCAGTTTCGGATTCTCCGTCAAAAGGGCACTGA 506
Query 142 AAAGCCAGGAACTGGAGAATATGACAAGTTTTTCGAGGAAGGAATCTTCGA-TTGCGTAG 200
|| ||| |||||||||| |||||||||||| |||||||||||||||||| | ||||| |
Sbjct 507 AACGCCGGGAACTGGAGTATATGACAAGTTCTTCGAGGAAGGAATCTTC-AGCTGCGTCG 565
Query 201 GATGCAAGACTCCTCTTTATAAATCAACCACGAAGTTCGATTCCGGATGTGGCTGGCCAG 260
||||||| ||||||||||||||||| || || ||||| ||| ||||||||||||||||||
Sbjct 566 GATGCAAAACTCCTCTTTATAAATCCACTACAAAGTTTGATGCCGGATGTGGCTGGCCAG 625
Query 261 CTTTCTTTGAAGGAC-TCCCTGGTGCCATAAACCGAACCCCTGATCCAGATGGGAGAAGA 319
||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 626 CTTTCTTTGAAGGACTTCCC-GGTGCCATTAACCGAACCCCTGATCCAGATGGGAGAAGA 684
Query 320 ACTGAGATCACTTGTGCTGCGTGCGATGGACATTTAGGCCATGTTT-TCAAAGGAGAAGG 378
||||||||||||||||| | ||||||||| ||||||||||||||| | |||||||||||
Sbjct 685 ACTGAGATCACTTGTGCCGTGTGCGATGGGCATTTAGGCCATGTTCAT-AAAGGAGAAGG 743
Query 379 TTACGGTAATCCAACCGATGAACGTCATTGCGTTAACAGTGTTTCGATCAGTTTTAACCC 438
||| | || ||||||||||||||| ||||| |||||||| |||||||||| |||||||||
Sbjct 744 TTATGCTACTCCAACCGATGAACGCCATTGTGTTAACAGCGTTTCGATCAATTTTAACCC 803
Query 439 GGCAAAATCTTCCTCTATAATCTGA 463
||| ||| |||||||| ||| ||||
Sbjct 804 GGCCAAACCTTCCTCTGTAACCTGA 828
> Ahg354595 jgi|Araly1|354595|fgenesh1_pg.C_scaffold_7001768
Length=426
Score = 231 bits (125), Expect = 4e-60
Identities = 289/365 (79%), Gaps = 24/365 (7%)
Strand=Plus/Plus
Query 68 CAGAAAAC-AGAGGAGGAGTGGCGTGCGGTTCTTTCTCCGGAGCAGTTTCGTATTCTTC- 125
||| |||| ||| |||||||||||||||||||||||||| ||||||||| | ||| ||
Sbjct 37 CAG-AAACAAGAAGAGGAGTGGCGTGCGGTTCTTTCTCCTGAGCAGTTTAGGGTTC-TCA 94
Query 126 G-TCAAAAAGGCACTGA-AAAGCCAGG-AACTGGAGAATATGAC-AAGTTTTTCGAGGAA 181
| | ||||||||| || ||| | ||| || ||||| ||| || ||| |||||||||
Sbjct 95 GAT-TAAAAGGCACAGATAAA-CGAGGCAA-AGGAGAGTAT-ACAAAGAAGTTCGAGGAA 150
Query 182 GGAATCTTCGA-TTGCG-TAGGATGCAAG-ACTCCTCTTTATAAATCAACCACGAAGTTC 238
|| | ||| | ||| | | || || | ||| ||||||||||||||||||| ||||||
Sbjct 151 GGGA-CTTATAGTTGTGCT-GGTTG-TGGAACTGCTCTTTATAAATCAACCACTAAGTTC 207
Query 239 GATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGAC-TCCCTGGTGCCA-TAAACCGAA 296
|| ||||| || || ||||| || ||||| | | | | |||| |||| | |||| | ||
Sbjct 208 GACTCCGGTTGCGGTTGGCCTGCGTTCTTCG-ACGCCATCCCCGGTGTTATTAAA-CAAA 265
Query 297 CCCCTGATCCAGATGGGAGAAGAACT-GAGATCACTTGTGCTGCGTGCGATGGACATTTA 355
| || || ||| ||| ||||||| | ||||| || ||||| | ||| ||||||||||||
Sbjct 266 CTCCAGAAGCAGGTGGAAGAAGAA-TGGAGATAACATGTGCAGTGTGTGATGGACATTTA 324
Query 356 GGCCATGTTTTCAAAGGAGAAGGTTACGGTAATCCAACCGATGAACGTCATTGCGTTAAC 415
||||||||||||||||||||||||||| || ||| |||||| ||||||| |||||||||
Sbjct 325 GGCCATGTTTTCAAAGGAGAAGGTTACTCTACTCCTACCGATCAACGTCACTGCGTTAAC 384
Query 416 AGTGT 420
|||||
Sbjct 385 AGTGT 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5