BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04840.1

Length=848
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943255 jgi|Araly1|943255|scaffold_603799.1                        675    0.0  


> Ahg943255 jgi|Araly1|943255|scaffold_603799.1
Length=468

 Score =  675 bits (365),  Expect = 0.0
 Identities = 422/450 (94%), Gaps = 2/450 (0%)
 Strand=Plus/Plus

Query  134  AAATGGAAACGAAGGCGGCTCCTGAAGCTGGTATGATCAAAAAGTCCAACGAGGAGTGGC  193
            ||||||||| || ||| ||||| |||| |||| |||||||||||||||||||||||||||
Sbjct  20   AAATGGAAATGACGGCAGCTCCGGAAGGTGGTTTGATCAAAAAGTCCAACGAGGAGTGGC  79

Query  194  GTACGGTTCTATCTCCTGAACAGTTTAAGATTCTTAGAGAGAAATCTATTGAAAAGAGAG  253
            || |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct  80   GTGCGGTTCTATCTCCTGAACAGTTTAAGATTCTTAGGGAGAAAGCTATTGAGAAGAGAG  139

Query  254  GGTCAGGAGAATATGTGAAGTTGTTCGAGGAAGGAATCTACTGTTGTGTTGGTTGTGGAA  313
            |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  140  GGTCAGGAGAGTATGTGAAGTTGTTCGAGGACGGAATCTACTGTTGTGTTGGTTGTGGCA  199

Query  314  ATCCGGTTTATAAATCAACCACTAAATTCGATTCCGGTTGCGGTTGGCCGGCtttttttG  373
            ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct  200  ATCCGGTTTATAAATCAACCACTAAATTCGATTCCGGTTGCGGTTGGCCTGCGTTTTTCG  259

Query  374  ATGCTATTCCTGGCGCCATTAACCGAACCGAGGAGAGAGCTGGATTAAGATATGAGATAA  433
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  260  ATGCTATTCCCGGCGCCATTAACCGAACCGAGGAGAGAGCTGGATTAAGATATGAGATCA  319

Query  434  CTTGCACAAAATGTGATGGACATCTAGGTCATGTCTTAAAAAATGAAGGTTTTCCAACAC  493
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  320  CTTGCACAAAATGTGATGGACATCTTGGCCATGTCTTAAAAAATGAAGGTTTTCCAACAC  379

Query  494  CAACTGACGAACGCCATTGCGTCAACAGCGTTGCTCTCAAGTTCTCTTCCGCTAT-CACA  552
            |||||||||||||||||||| ||||||||||||| ||||||||||||||||| || | | 
Sbjct  380  CAACTGACGAACGCCATTGCATCAACAGCGTTGCACTCAAGTTCTCTTCCGCGATTC-CG  438

Query  553  TCTCAGTGATAAACGGATCCGGTTTAGTTC  582
            |||||||||||||| |||||||||| ||||
Sbjct  439  TCTCAGTGATAAACCGATCCGGTTTCGTTC  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31375160691


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5