BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04860.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490119 jgi|Araly1|490119|fgenesh2_kg.6__3253__AT4G04860.1 1406 0.0
Ahg492693 jgi|Araly1|492693|fgenesh2_kg.7__2126__AT4G21810.1 797 0.0
> Ahg490119 jgi|Araly1|490119|fgenesh2_kg.6__3253__AT4G04860.1
Length=1189
Score = 1406 bits (761), Expect = 0.0
Identities = 925/1001 (92%), Gaps = 23/1001 (2%)
Strand=Plus/Plus
Query 4 AATTAAACAAATATCGCAAATGTTAAACTATTATACACATATAAATTTCTGTATATACAA 63
|||||||||||||||||||| | | |||| ||||||| ||||||| ||||||||| |
Sbjct 1 AATTAAACAAATATCGCAAA-ACT-ATTTATT-TACACATTTAAATTTGTGTATATAC-A 56
Query 64 AACAAACGAAGAAGACGAATCTCTCAGTTTCGTCGTTCGTTTCGAAGTTGTGCGTTGGTG 123
||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||
Sbjct 57 GACAAACGAAGAAGACGAATCTCTCAGTTTCG--ATTCGTTTCAAAGTTGTGCGTAGTTG 114
Query 124 AAATTTGAAATCTGAATACACTCATTGC-AA-ACCTTagaagaagaagaag--aaga-ag 178
|||||||||||||||| ||||||||||| || ||||| ||||||||||||| | ||
Sbjct 115 AAATTTGAAATCTGAA-ACACTCATTGCAAACACCTTTGAAGAAGAAGAAGCTTTCATAG 173
Query 179 aagaag-aagCTTCCATA-GATTCCGTTG-GGCTTTTACTGTGTTTGATTGATCGGATCG 235
| | | || | || | || || || | || | | | |||| ||||||||||||
Sbjct 174 ATTCCGTTGGGTT-C-TAGGGTTTCG-TGACGATTGGA-T-T-TTTGCTTGATCGGATCG 227
Query 236 ATTGCGATTACGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 295
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATTGCGATTAAGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 287
Query 296 TTATCACTCGCTCTTATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 355
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TTATCACTCGCTCATATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 347
Query 356 TCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATT 415
| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 348 TTATATCTCCCTATAACCTCTATTTGAATCCGACCCTTGTGGTGAAGCAATACCAATATT 407
Query 416 GGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 475
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GGCGTCTCGTTACAAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 467
Query 476 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 527
Query 536 CTGATTTCCTATACATGCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTA-TC 594
||||||||||||||||||||||||||||||| |||||| ||||||||||||| | || ||
Sbjct 528 CTGATTTCCTATACATGCTCCTATTTGGAGCTTCTGTTCTAACCGGTATTGTTC-TACTC 586
Query 595 GGTGGAATGATACCATACTTGTCAGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 654
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 587 GGTGGAATGATACCGTACTTGTCTGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 646
Query 655 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 706
Query 715 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 766
Query 775 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCTTACTAC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 767 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCGTACTAC 826
Query 835 TTTCTGGCTGAGGTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTC 894
|||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||| |||
Sbjct 827 TTTCTGGCTGAGGTCTATCCACGAATGACTAATCGTCATCCTTTAAAGACTCCATCGTTC 886
Query 895 CTCAAAGCGTTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTT 954
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 887 CTCAAAGCCCTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAAACGTGAGGTTT 946
Query 955 GCTGCTGCGCCTTTCGATGAAATCCACCAAGACTGATTCTG 995
|||||||||||||| ||||||||||||||||||||| ||||
Sbjct 947 GCTGCTGCGCCTTTTGATGAAATCCACCAAGACTGAGTCTG 987
Score = 235 bits (127), Expect = 6e-61
Identities = 181/206 (88%), Gaps = 8/206 (4%)
Strand=Plus/Plus
Query 1034 AGTTTGGCTTGTGGATCAGATATAAATGGTGCAAAGGCAGATGATACACAAAAGTCTATT 1093
|||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 988 AGTTTGGCTTGTTGATCATATATATATGGTAAAAAGGCAGATGATACAC-AAAGTCTA-- 1044
Query 1094 TTGACTCTGACACG-TAG-T-TGCGACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1150
|| ||||||||||| ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1045 TTAACTCTGACACGCTAGTTATGAAACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1104
Query 1151 TTTGGTTCCTTCTCTTTCCTCCCATCTCTTCATCTTTTTGTGTATACAAACAT-CGTTTG 1209
|||||||||||| |||| |||||||||||| ||||| ||||||||||||| | | ||||
Sbjct 1105 TTTGGTTCCTTCCCTTTTCTCCCATCTCTTTATCTTGTTGTGTATACAAATTTGC-TTTG 1163
Query 1210 CTTTTAGTGGTTATTGATATGAACAC 1235
|| ||||||||||| |||||| ||||
Sbjct 1164 CTCTTAGTGGTTATGGATATGGACAC 1189
> Ahg492693 jgi|Araly1|492693|fgenesh2_kg.7__2126__AT4G21810.1
Length=1138
Score = 797 bits (431), Expect = 0.0
Identities = 646/749 (86%), Gaps = 18/749 (2%)
Strand=Plus/Plus
Query 255 TATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCTTATCT 314
||||||||| || ||||||||||||||||| |||||||||||||| || || || |||||
Sbjct 183 TATGGCTCAAGCCGTAGAAGAATGGTATAAGCAGATGCCGATTATAACCCGGTCGTATCT 242
Query 315 CACGGCGGCTGTTA-TCACCACCGTCGGATGTTCCCTCGATATCATATCTCCATATAACC 373
||||||||||| || ||||||||||||||||||| ||||| || |||||||| ||||| |
Sbjct 243 CACGGCGGCTG-TAGTCACCACCGTCGGATGTTCGCTCGAGATTATATCTCCTTATAATC 301
Query 374 TTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATAT-TGGCGTCTCGTTACTAAT 432
| || | ||||| || |||||||||||||||||||| | | |||||||| ||||| |||
Sbjct 302 TCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGT-TCTGGCGTCTTGTTACAAAT 360
Query 433 TT-CTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATATGTTCTTTCTCGCACG 491
|| ||| |||||||| ||||||||||||||||| ||||||||||||| ||||| || ||
Sbjct 361 TTCCTT-TATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCG 419
Query 492 ATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTGCTGATTTCCTATACAT 551
|||||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 420 ATACTGCAAACTACTCGAAGAAAACTCCTTCAGGGGAAAGACTGCGGATTTCCTTTACAT 479
Query 552 GCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTATCGGTGGAATGATACCATA 611
|||| |||| || ||| ||||| |||| |||||||| || ||||| ||||||||||| ||
Sbjct 480 GCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATCGGCGGAATGATACCTTA 539
Query 612 CTTGTCAGCATCATT-TGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGG 670
||||||| ||||| | | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 540 TTTGTCAGTGTCATTCT-CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGG 598
Query 671 TCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGTCTGTTCACCT 730
||||||||||||| |||||||||||||| || || |||||||||||||| || ||||| |
Sbjct 599 TCTATGTATGGAGTAAACAAAATCCTTACATCCATATGAGTTTCCTTGGCCTTTTCACTT 658
Query 731 TCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGTG 790
|||||||||| || |||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 659 TCACAGCAGCGTATTTACCATGGGTACTTCTTGGGTTCTCAATCCTTGTTGGTGCAAGTG 718
Query 791 CTTGGGTG-GATCTTT-TGGGTATGATAGCAGGTCACGCTTACTACTTTC-TGGCTG-AG 846
|||||| | ||| ||| |||| |||||||| ||||| || |||||| ||| | || |
Sbjct 719 CTTGGG-GAGAT-TTTCTGGGAATGATAGCGGGTCATGCATACTAC-TTCTTAGC-GTTT 774
Query 847 GTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTCCTCAAAGCGTTA 906
|| ||||| |||||||| |||| ||||| || ||||||||||| ||||||||||| ||
Sbjct 775 GTGTATCCACGAATGACGGATCGACGTCCCTTGAAGACTCCATCTTTCCTCAAAGCCCTA 834
Query 907 TTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTTGCTGC-TGCGCC 965
||||| ||||| ||||| ||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 835 TTTGCTGATGAGCCAGTCGTGATTGCACGGCCAGAAGATGTGAGGTTTGCT-CATGCGCC 893
Query 966 TTTCGATGAAATCCACCAAGACTGATTCT 994
||| ||||||||||||||||||||| |||
Sbjct 894 TTTTGATGAAATCCACCAAGACTGAATCT 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5