BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04870.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895553 jgi|Araly1|895553|Al_scaffold_0006_3549 1504 0.0
> Ahg895553 jgi|Araly1|895553|Al_scaffold_0006_3549
Length=1023
Score = 1504 bits (814), Expect = 0.0
Identities = 966/1036 (93%), Gaps = 23/1036 (2%)
Strand=Plus/Plus
Query 140 ATGGCGATTTACAGATCTCTAAGAAAGCTAGTTGAAATCAATCACCGGAAAACAAGACCA 199
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGATTTACAGATCTCTGAGAAAGCTAATTGAAATCAATCACCGGAAAACTAGACCA 60
Query 200 TTCTTCACCGCCGCTA------CA--G-CTTCCGGCGGAACCGTTTCTCTGACT-CCACC 249
|||||||||||||| | || | |||||||||||||||||||||| | | |||||
Sbjct 61 TTCTTCACCGCCGCCACCGCCGCATCGCCTTCCGGCGGAACCGTTTCTCTTA-TCCCACC 119
Query 250 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACACCGTTTATCTCCGCTTTCGAAATGGTT 309
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACAGCGTTTATCTCCGCTTTCGAAATGGTT 179
Query 310 CGTTCCTCTTAATGGACCTCTCTTCTTATCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 369
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 180 CGTTCCTCTTCATGGACCTCTCTTCCTCTCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 239
Query 370 GACACCTTTGCACTGGCGCGGAAACGGCTCTGTTTTGAAAAAAGTCGAAGCTCTGAATCT 429
|||||||||||| ||||||||||| ||| || ||||||| || |||||||||||||||||
Sbjct 240 GACACCTTTGCATTGGCGCGGAAATGGCGCTATTTTGAAGAAGGTCGAAGCTCTGAATCT 299
Query 430 TAGATTGGATCGAATTAGAAGCAGAACTAGGTTTCCGAGACAGTTAGGGTTACAGTCTGT 489
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 300 TAGATTGGATCGAATTAGAAGTAGAACTAGGTTTCCTAGACATTTAGGGTTACAGTCTGT 359
Query 490 GGTACCAAACATATTGACGGTGGATCGCAACGATTCCAAGGAAGAAGATGGTGGAAAATT 549
|||| | | | |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 360 GGTA-C---C--A---ACGGTGGATCGCAACGATTCGAAGGAAGAAGATGGTGG--AA-T 407
Query 550 AGTCAAGAGTTTTGTTAATGTGCCGAATATGATATCAATGGCGAGATTAGTATCTGGTCC 609
| | ||||||||||||||||| || ||| ||||||||||||| |||||||| ||||||||
Sbjct 408 ACTTAAGAGTTTTGTTAATGTCCCTAATTTGATATCAATGGCAAGATTAGTGTCTGGTCC 467
Query 610 TGTGCTTTGGTGGATGATCTCGAATGAGATGTATTCTTCTGCTTTCTTAGGGTTGGCTGT 669
|| ||||||||||||||| ||||||||||||||| ||||||||||| |||| ||| ||||
Sbjct 468 TGCGCTTTGGTGGATGATTTCGAATGAGATGTATACTTCTGCTTTCGTAGGCTTGACTGT 527
Query 670 TTCTGGAGCTAGTGATTGGTTAGATGGTTACGTGGCTCGGAGGATGAAGATTAACTCTGT 729
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 528 TTCTGGAGCTAGTGATTGGTTAGATGGTTACATGGCTCGGAGGATGAAGATTAATTCTGT 587
Query 730 GGTTGGCTCGTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTAGCAGTAGC 789
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 588 GGTTGGCTCTTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTCGCAGTAGC 647
Query 790 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 707
Query 850 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCACTAAACTTGGACTGGAAGTGGAAAAC 909
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 708 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCATTAAACTTGGACTGGAAGTGGAAAAA 767
Query 910 TTGGAGTGACTTCTTCAATCTAGATGGTTCAAGTCCTCAGAAAGTAGAACCATTGTTTAT 969
|||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 768 TTGGAGTGACTTCTTCAACCTCGATGGTTCAAGCCCTCAGAAAGTAGAGCCATTGTTTAT 827
Query 970 AAGCAAGGTGAATACAGTTTTCCAGTTGACTCTAGTCGCTGGTGCAATACTTCAACCAGA 1029
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 828 AAGCAAGGTGAATACAGTTTTCCAGTTGGCTCTAGTCGCTGGTGCAATACTTCAACCCGA 887
Query 1030 GTTTGGGAATCCAGACACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 1089
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GTTTGGGAATCCAGATACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 947
Query 1090 GACTATGGCTTCAACTGCAGCTTATGGTGTACAATACTGGAAGAAGAGACCTATATCTAT 1149
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 948 GACTATGGCTTCAACTGCAGCTTATGGGGTACAATACTGGAAGAAGAGACCTATCTCTAT 1007
Query 1150 GATTAAGAGATCATAG 1165
||||||||||||||||
Sbjct 1008 GATTAAGAGATCATAG 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5