BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04880.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943260 jgi|Araly1|943260|scaffold_603804.1 1679 0.0
> Ahg943260 jgi|Araly1|943260|scaffold_603804.1
Length=1108
Score = 1679 bits (909), Expect = 0.0
Identities = 1031/1091 (95%), Gaps = 3/1091 (0%)
Strand=Plus/Plus
Query 45 TCTTCTGGA-CaaaaaaaaaaTGGAATGGATACAATCACTGCCCAAAATCGAGCTTCATG 103
|||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1 TCTTTTGGAGAAAAAAAAAAATGGAATGGATAAAATCAATGCCCAAAATCGAGCTTCATG 60
Query 104 CTCATCTCAACGGTTCCATTAGAGACTCCACTCTTCTAGAGCTTGCTAGGGTTCTTGGTG 163
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCATCTCAATGGCTCCATTAGAGACTCCACTCTTCTAGAGCTTGCTAGGGTTCTTGGTG 120
Query 164 AGAAAGGCGTTATAGTGTTTGCTGATGTTGAACATGTCATTCaaaaaaaTGATCGATCTT 223
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AGAAAGGTGTTATAGTGTTTGCTGATGTTGAACATGTCATTCGAAAAAATGATCGATCTT 180
Query 224 TGGTTGAAGTCTTCAAGTTGTTTGATTTGATCCATAAGCTCACTACTGATCACAAAACTG 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TGGTTGAAGTCTTCAAGTTGTTTGATTTGATCCATAAGCTCACTACTGATCACAAAACCG 240
Query 284 TGACAAGGATCACAAGAGAAGTTGTGGAAGATTTTGCTTTAGAGAATGTGGTGTATCTTG 343
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 241 TGACAAGGATCACTAGAGAAGTTGTAGAAGATTTTGCTTTAGAGAATGTGGTGTATCTCG 300
Query 344 AGTTACGAACTACTCCAAAGAGGAGTGATTCAATAGGTATGAGTAAACGTTCTTACATGG 403
||||| |||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct 301 AGTTAAGAACAACTCCAAAGAGGAATGATTCGATAGGTATGAGTAAACGGTCTTACATGG 360
Query 404 AAGCTGTAATCCAAGGTCTAAGATCTGTCAGTGAAGTCGATATTGATTTTGTTACCGCAT 463
| || || || ||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 361 ATGCGGTTATTGAAGGTCTGAGATCTGTCAGTGAAGTCGATATTGAATTTGTTACGGCAT 420
Query 464 CTGATTCTCAAAAACTGCACAATGC-TGGTGATGGGATTGGAAGAAAGAAGATTTATGTT 522
|||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||
Sbjct 421 CTGATTCTCAAAAACTGCTCAATGCGTG-TGATGGAATTGGAAGAAAGAAGATTTATGTT 479
Query 523 AGACTTCTTCTTAGTATTGATCGTAGGGAAACAACAGAGTCCGCAATGGAAACTGTTAAG 582
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 480 AGACTTCTTCTTAGTATTGATCGTAGAGAAACAACCGAGTCCGCAATGGAAACTGTTAAG 539
Query 583 CTCGCATTGGAAATGAGAGATGTCGGGGTAGTTGGTATCGATCTTTCGGGGAATCCTCTT 642
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 540 CTCGCATTGGAAATGAGAGATGTCGGGGTTGTTGGTATCGATCTTTCAGGGAATCCTCTT 599
Query 643 GTTGGAGAATGGAGCACTTTCTTGCCTGCATTACAATATGCCAAAGACAATGATCTTCAC 702
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 GTTGGAGAATGGAGCACTTTCTTGCCTGCATTACAATTTGCCAAAGACAATGATCTTCAC 659
Query 703 ATCACTCTTCACTGTGGAGAGGTTCCCAATCCGAAAGAGATCCAAGCCATGCTTGATTTT 762
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 660 ATCACTCTTCACTGTGGAGAGGTCCCCAATCCAAAAGAAATCCAAGCCATGCTTGATTTC 719
Query 763 AAACCGCATCGGATTGGACATGCCTGTTTCTTCAAAGACGAAGATTGGACAAAGTTGAAA 822
||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 720 AAACCGCATCGAATTGGCCATGCCTGTTTCTTCAAAGATGAAGATTGGTCAAAGTTGAAA 779
Query 823 TCTTTCCGGATTCCGGTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCT 882
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 780 TCTTTCCGGATTCCGGTTGAAATATGTCTAACATCCAACATCATAACCAAATCGATATCT 839
Query 883 TCCATCGATATACACCATTTCGCTGATCTTTACAATGCAAAGCATCCATTGATTCTATGC 942
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 TCCATCGATATCCACCATTTCGCTGATCTCTACAATGCAAAGCATCCATTGATTCTATGC 899
Query 943 ACTGATGATTTTGGAGTATTCTCCACTAGCCTCTCCAACGAGTACGCCCTCGCTGTTCGT 1002
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 900 ACTGATGATTTTGGAGTATTCTCCACTAGCCTCTCCAATGAGTACGCTCTCGCTGTTCGT 959
Query 1003 TCTCTTGGTCTTAGTAAAAGTGAAACCTTTGCATTGGCTAGAGCAGCCATAGACGCAACA 1062
||| |||||||||||||||| ||||||||||||||||||||| | || |||||||||||
Sbjct 960 TCTTTTGGTCTTAGTAAAAGAGAAACCTTTGCATTGGCTAGAACCGCAATAGACGCAACG 1019
Query 1063 TTTGCAGAAGATGAAGTTAAGCAACAACTTAGGTTCATTTTTGATTCAGCCTCGCCAGAG 1122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1020 TTTGCAGAAGATGAAGTTAAGCAACAACTTAGGTTGATTTTTGATTCAGCCTCGCCAGAG 1079
Query 1123 CACGTTTAGTG 1133
| | ||||||
Sbjct 1080 TATGCTTAGTG 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5