BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G04880.1 Length=1327 Score E Sequences producing significant alignments: (Bits) Value Ahg943260 jgi|Araly1|943260|scaffold_603804.1 1679 0.0 > Ahg943260 jgi|Araly1|943260|scaffold_603804.1 Length=1108 Score = 1679 bits (909), Expect = 0.0 Identities = 1031/1091 (95%), Gaps = 3/1091 (0%) Strand=Plus/Plus Query 45 TCTTCTGGA-CaaaaaaaaaaTGGAATGGATACAATCACTGCCCAAAATCGAGCTTCATG 103 |||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1 TCTTTTGGAGAAAAAAAAAAATGGAATGGATAAAATCAATGCCCAAAATCGAGCTTCATG 60 Query 104 CTCATCTCAACGGTTCCATTAGAGACTCCACTCTTCTAGAGCTTGCTAGGGTTCTTGGTG 163 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCATCTCAATGGCTCCATTAGAGACTCCACTCTTCTAGAGCTTGCTAGGGTTCTTGGTG 120 Query 164 AGAAAGGCGTTATAGTGTTTGCTGATGTTGAACATGTCATTCaaaaaaaTGATCGATCTT 223 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 AGAAAGGTGTTATAGTGTTTGCTGATGTTGAACATGTCATTCGAAAAAATGATCGATCTT 180 Query 224 TGGTTGAAGTCTTCAAGTTGTTTGATTTGATCCATAAGCTCACTACTGATCACAAAACTG 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 181 TGGTTGAAGTCTTCAAGTTGTTTGATTTGATCCATAAGCTCACTACTGATCACAAAACCG 240 Query 284 TGACAAGGATCACAAGAGAAGTTGTGGAAGATTTTGCTTTAGAGAATGTGGTGTATCTTG 343 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 241 TGACAAGGATCACTAGAGAAGTTGTAGAAGATTTTGCTTTAGAGAATGTGGTGTATCTCG 300 Query 344 AGTTACGAACTACTCCAAAGAGGAGTGATTCAATAGGTATGAGTAAACGTTCTTACATGG 403 ||||| |||| ||||||||||||| |||||| ||||||||||||||||| |||||||||| Sbjct 301 AGTTAAGAACAACTCCAAAGAGGAATGATTCGATAGGTATGAGTAAACGGTCTTACATGG 360 Query 404 AAGCTGTAATCCAAGGTCTAAGATCTGTCAGTGAAGTCGATATTGATTTTGTTACCGCAT 463 | || || || ||||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 361 ATGCGGTTATTGAAGGTCTGAGATCTGTCAGTGAAGTCGATATTGAATTTGTTACGGCAT 420 Query 464 CTGATTCTCAAAAACTGCACAATGC-TGGTGATGGGATTGGAAGAAAGAAGATTTATGTT 522 |||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||| Sbjct 421 CTGATTCTCAAAAACTGCTCAATGCGTG-TGATGGAATTGGAAGAAAGAAGATTTATGTT 479 Query 523 AGACTTCTTCTTAGTATTGATCGTAGGGAAACAACAGAGTCCGCAATGGAAACTGTTAAG 582 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 480 AGACTTCTTCTTAGTATTGATCGTAGAGAAACAACCGAGTCCGCAATGGAAACTGTTAAG 539 Query 583 CTCGCATTGGAAATGAGAGATGTCGGGGTAGTTGGTATCGATCTTTCGGGGAATCCTCTT 642 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 540 CTCGCATTGGAAATGAGAGATGTCGGGGTTGTTGGTATCGATCTTTCAGGGAATCCTCTT 599 Query 643 GTTGGAGAATGGAGCACTTTCTTGCCTGCATTACAATATGCCAAAGACAATGATCTTCAC 702 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 600 GTTGGAGAATGGAGCACTTTCTTGCCTGCATTACAATTTGCCAAAGACAATGATCTTCAC 659 Query 703 ATCACTCTTCACTGTGGAGAGGTTCCCAATCCGAAAGAGATCCAAGCCATGCTTGATTTT 762 ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 660 ATCACTCTTCACTGTGGAGAGGTCCCCAATCCAAAAGAAATCCAAGCCATGCTTGATTTC 719 Query 763 AAACCGCATCGGATTGGACATGCCTGTTTCTTCAAAGACGAAGATTGGACAAAGTTGAAA 822 ||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct 720 AAACCGCATCGAATTGGCCATGCCTGTTTCTTCAAAGATGAAGATTGGTCAAAGTTGAAA 779 Query 823 TCTTTCCGGATTCCGGTTGAAATATGTTTAACATCCAACATTGTAACCAAATCGATATCT 882 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 780 TCTTTCCGGATTCCGGTTGAAATATGTCTAACATCCAACATCATAACCAAATCGATATCT 839 Query 883 TCCATCGATATACACCATTTCGCTGATCTTTACAATGCAAAGCATCCATTGATTCTATGC 942 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 840 TCCATCGATATCCACCATTTCGCTGATCTCTACAATGCAAAGCATCCATTGATTCTATGC 899 Query 943 ACTGATGATTTTGGAGTATTCTCCACTAGCCTCTCCAACGAGTACGCCCTCGCTGTTCGT 1002 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 900 ACTGATGATTTTGGAGTATTCTCCACTAGCCTCTCCAATGAGTACGCTCTCGCTGTTCGT 959 Query 1003 TCTCTTGGTCTTAGTAAAAGTGAAACCTTTGCATTGGCTAGAGCAGCCATAGACGCAACA 1062 ||| |||||||||||||||| ||||||||||||||||||||| | || ||||||||||| Sbjct 960 TCTTTTGGTCTTAGTAAAAGAGAAACCTTTGCATTGGCTAGAACCGCAATAGACGCAACG 1019 Query 1063 TTTGCAGAAGATGAAGTTAAGCAACAACTTAGGTTCATTTTTGATTCAGCCTCGCCAGAG 1122 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1020 TTTGCAGAAGATGAAGTTAAGCAACAACTTAGGTTGATTTTTGATTCAGCCTCGCCAGAG 1079 Query 1123 CACGTTTAGTG 1133 | | |||||| Sbjct 1080 TATGCTTAGTG 1090 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49636037934 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5