BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G04900.1

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327423 jgi|Araly1|327423|fgenesh1_pm.C_scaffold_6002643           728    0.0  


> Ahg327423 jgi|Araly1|327423|fgenesh1_pm.C_scaffold_6002643
Length=468

 Score =  728 bits (394),  Expect = 0.0
 Identities = 446/471 (95%), Gaps = 3/471 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAATGAAAATGAAGGGCATCTATAAAGGCTTCAAATGTATCTCTCAAATATTTGCC  60
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCAGTGAAAATGAAGGGCATCTATAAAGGCTTCAAATGTATCTCTCAAATATTTGCC  60

Query  61   GTTGAGAAAGAGAGAGATGAAATAGAAATTGGGTTTCCAACAGATGTAAAACATGTGGCT  120
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  61   GTTGAGAAAGAGAGAGATGAAATAGAAATTGGGTTTCCAACAGACGTAAAACATGTTGCT  120

Query  121  CATATTGGCTGGGAGGGTTCATCTGGTAGTGCTCCTGGTTGGATGAGTGAGTTTAAGGTC  180
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  121  CATATTGGCTGGGAGGGTTCCTCTGGGAGTGCTCCTGGTTGGATGAGTGAGTTTAAGGTC  180

Query  181  GGGGCTGAGCTTTTATCTCCAAGACCATCATCTTTCAGTAATGCAAGACcttctacttct  240
            || |||||| || |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGAGCTGAGGTTCTATCACCGAGACCATCATCTTTCAGTAATGCAAGACCTTCTACTTCT  240

Query  241  ttcttcacttcttcttcttcCACTGATTTTGATCAAGGATCGAGTCAACGAGGAATATCA  300
            || ||||||||||||||  | ||||||||||||||||||||||||||||||  |||||||
Sbjct  241  TTTTTCACTTCTTCTTC--C-ACTGATTTTGATCAAGGATCGAGTCAACGAACAATATCA  297

Query  301  GATACACTACGAGATATACCTCCAGTTACTCCGATAAATTTACCGAAAAATAACAAGAAG  360
            ||||||||| |||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct  298  GATACACTAAGAGATATACCTCCAGTAACTCCGATAAATCTACCAAAAAATAACAAGAAG  357

Query  361  AAAAGCAGTAGAAGAAAGAAATCTTCTTCATCATCATCATCTCCAAAATCTTCAAGATCA  420
            ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  358  AAAAGTAGTAGAAGAAAGAAGTCTTCTTCATCATCATCATCTCCAAAATCGTCAAGATCA  417

Query  421  TCTGTATTATCCAAATCTTCGTATAAATCAACTGTATCACGATTAATCTAG  471
            ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  418  TCTATATTATCCAAATCTTCGTATAAATCAACTGTATCACGACTAATCTAG  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17055548283


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5