BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04910.1
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943265 jgi|Araly1|943265|scaffold_603809.1 3216 0.0
Ahg355993 jgi|Araly1|355993|fgenesh1_pg.C_scaffold_7003166 1552 0.0
Ahg890006 jgi|Araly1|890006|Al_scaffold_0007_1992 1016 0.0
> Ahg943265 jgi|Araly1|943265|scaffold_603809.1
Length=2231
Score = 3216 bits (1741), Expect = 0.0
Identities = 1938/2035 (95%), Gaps = 6/2035 (0%)
Strand=Plus/Plus
Query 289 CATCCGTGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTCGAC 348
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 176 CATCCGTGATGGAAACATTGCTCTCAATGCTATTCAAAGGCGGCATGCTAGAGTTTCGAC 235
Query 349 TGGTGATATGGTATCTGTTAGCAGATTTGTTCCTCCTGAAAATTTTGATCTGGCTATGCT 408
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 236 TGGTGATATGGTATCTGTTAGCAGATTTGTTCCTCCAGAAAATTTTGATCTGGCTATGCT 295
Query 409 GACGCTGGAGTTGGAATTTGTGAAGAAAGGAACTAAAAGCGAGCAGGTTGATGCTGCTCT 468
|||||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 296 GACGCTTGAGTTAGAATTTGTAAAGAAGGGGACTAAAAGCGAGCAGGTTGATGCTGCTCT 355
Query 469 CCTTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGC 528
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCTTTCAACCCAACTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGC 415
Query 529 GACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTTGAGGG 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 416 GACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTAGAGGG 475
Query 589 TCAGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATTGTGTT 648
|||||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 476 TCAGGATCACTCGAATGGCATCGAAAGAGGGTTGCTCTCTAAAGATACATATATTGTGTT 535
Query 649 TGAAGCATCAAA-TGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGCAGCA 707
|||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 536 TGAAGCATCAAACT-CAAGTGGTATAAAGATTGTCAACCAACGGGAAGCTGCTAGCAGCA 594
Query 708 ATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTTGGTGCAG 767
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 595 ATATATTTAAACATAAGGAATTTAACCTTGAGTCGCTGGGCATAGGTGGTCTGGGTGCAG 654
Query 768 AGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGTCACCA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGTCACCA 714
Query 828 GCAGACTGGGAATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGGTACTGGCA 887
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACAGATTGGGAATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGGTACTGGCA 774
Query 888 AAACCCTTATGGCACGGCAAATTGGAAAGATGCTTAATGGAAAGGATCCAAAGATCGTTA 947
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 AAACCCTTATGGCACGGCAGATTGGAAAGATGCTTAATGGAAAGGATCCAAAGATTGTTA 834
Query 948 ATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAAGAGACTTAT 1007
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATGGTCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAAGAGACTTAT 894
Query 1008 TTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGCTAGTGAGTTGCATGTCATTA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGCTAGTGAGTTGCATGTCATTA 954
Query 1068 TTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAGATGGCACAGGTG 1127
| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 955 TCTTTGATGAGATTGATGCAATTTGTAAGTCAAGAGGCTCAACCAGAGATGGCACAGGTG 1014
Query 1128 TCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAGGCCTTAAACA 1187
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1015 TCCATGATAGTATCGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAGGCCTTGAACA 1074
Query 1188 ATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGCTCTTTTAAGGC 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGCTCTTTTAAGGC 1134
Query 1248 CTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGGGCGTCTACAAA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGGGCGTCTACAAA 1194
Query 1308 TTCTTCAGATTCATACAAATAAGATGAAGGAAAATTCTTTCCTTGGGACTGATATCAATC 1367
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1195 TTCTTCAGATTCATACAAATAAGATGAAGGAAAATTCTTTCCTTGGTACTGATATCAATC 1254
Query 1368 TCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAGCTTGAAGGTGTTGTTA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAGCTTGAAGGTGTTGTTA 1314
Query 1428 AAAGTGCTACATCATATGCATTAAACAGACAACTAAGCATGGATGATCTTACAAAGCCTG 1487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1315 AAAGTGCTACATCATATGCATTAAACAGACAACTAAGCATGGATGATCTTACAAAGCCAG 1374
Query 1488 TGGAAGAAGAGAATATCAAGATCACTATGGAGGATTTTCTCCACGCTATCTATGAAGTTC 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TGGAAGAAGAGAATATCAAGATCACTATGGAGGATTTTCTCCACGCTATCTATGAAGTTC 1434
Query 1548 AACCTGCATTTGGAGCCTCCACAGATGACCTAGAGCGCTGCAGACTCAATGGGATGGTAG 1607
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1435 AACCTGCATTTGGAGCCTCCACAGATGACCTGGAGCGCTGCAGACTCAATGGGATGGTGG 1494
Query 1608 ATTGTGGTCATCGGCATAATCACATTTACAAAAGAGCTATGCTTCTAGTCGAGCAAGTTA 1667
||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1495 ATTCTGGTGATCGACATAATCACATTTACAAAAGAGCTATGCTTCTAGTCGAACAAGTTA 1554
Query 1668 AAGTTAGTACTAGAAGTCCTCTAGTCACTTGCCTTCTGGAGGGGCCCAGTGGAAGTGGGA 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGTTAGTACTAGAAGTCCTCTAGTCACTTGCCTTCTGGAGGGGCCCAGTGGAAGTGGGA 1614
Query 1728 AAACTGCTTTAGCAGCAACAATTGGTATCGATAGTGACTTCCCATATGTTAAGATAGTTT 1787
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1615 AAACTGCTTTGGCTGCAACTGTTGGTATCGATAGTGACTTCCCATATGTTAAGATAGTCT 1674
Query 1788 CTGCGGAAACTATGATTGGTCTTTCTGAGAGCACAAAATGTGCTCACATTGTCAAGGTCT 1847
|||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1675 CTGCCGAAACAATGATCGGTCTTTCTGAGAGCACAAAATGTGCTCACATCGTCAAGGTCT 1734
Query 1848 TTGAGGATGCATATAAATCTCCAATGAGCATCATTATCCTTGACGATATTGAAAGATTGT 1907
|||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1735 TTGAGGATGCGTATAAATCACCAATGAGCATCATTATTCTTGATGATATTGAAAGATTGT 1794
Query 1908 TGGAATTCATAGCAATCGGTCCTCGCTTTTCAAACATAATTTCACAGACGCTGATGGTCC 1967
|||||| | |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1795 TGGAATACGTAGCAATCGGTCCTCGTTTTTCAAACATAATTTCACAGACGCTAATGGTCC 1854
Query 1968 TTCTCAAACGACTTCCTCCTAAGGGGAAGAAACTTCTCGTCTTTGGGACAACAAGTGAAG 2027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 TTCTCAAACGACTTCCTCCTAAGGGGAAGAAACTTCTCGTCTTTGGGACAACAAGTGAAC 1914
Query 2028 TAACCTTCTTAGAGTCTGTTGGTATCTCTGATTGCTTCTCTGTCACTCACTCTGTTCCGA 2087
| ||||||||||| ||||||||||||| ||||| ||||||| ||||| |||||||||| |
Sbjct 1915 TGACCTTCTTAGACTCTGTTGGTATCTGTGATTCCTTCTCTATCACTTACTCTGTTCCAA 1974
Query 2088 CACTGCAAAA-AGAGGACGCAAAGAAGGTGCTAAATCAGCTTAACCTCTTCTCAGAGGAT 2146
|| | |||| ||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 1975 CATTA-AAAACAGAGGACGCAAAGAAGGTGCTAACGCAGCTTGACGTCTTCTCAGAGGAT 2033
Query 2147 GATGTTGATTCAGCTGCAGAGGCTCTCAATGACATGCCAATCAAGAAGATTTACATGCTA 2206
||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2034 GATGTCGACGCAGCGGCAGAGGCTCTCAATGACATGCCAATCAAGAAGCTTTACATGCTA 2093
Query 2207 ATAGAAATGGCTGCGCAAGGAGAAAACGGTGGATCTGCAGAAGCTATCTATGCTGGGAGA 2266
||||| |||||||| ||||||||| | ||||||||||||||||||||||| || ||||||
Sbjct 2094 ATAGAGATGGCTGCACAAGGAGAACATGGTGGATCTGCAGAAGCTATCTACGCCGGGAGA 2153
Query 2267 GAGAAAATCAATATCAATCATTTCTAT-GATTGCTTAGGAGACTTCATTCGCTTC 2320
||||||||||| |||| |||||||| | |||||| || |||| || |||| |||
Sbjct 2154 GAGAAAATCAAGATCACTCATTTCT-TCGATTGCCTACAAGACATCGTTCGATTC 2207
Score = 278 bits (150), Expect = 2e-73
Identities = 166/173 (96%), Gaps = 3/173 (2%)
Strand=Plus/Plus
Query 78 AACCTGAGATCGAAACCCCAGCCATGGCGGGTCGTTACGGATCGCAAGTCATGACGATGA 137
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTTGAGATCGAAA---CAGCCATGGCGGGTCGTTACGGATCGCAAGTCATGACGATGA 57
Query 138 CTGTGACCAATACTCCGTCCGCAGATCTAGCTTTTACTAACCTCGCTTACTGCTCTTCTT 197
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 58 CTGTGACCAATACTCCGTCTGCAGATCTAGCTTTTACCAACCTCGCTTACTGCTCCTCTT 117
Query 198 CCGATCTCCGTCAATTCTCCGTTCCCGGTTCCGATCTCTTCCTCGCCAACGTT 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCGATCTCCGTCAATTCTCCGTTCCCGGTTCCGATCTCTTCCTCGCCAACGTT 170
> Ahg355993 jgi|Araly1|355993|fgenesh1_pg.C_scaffold_7003166
Length=2202
Score = 1552 bits (840), Expect = 0.0
Identities = 1612/1978 (81%), Gaps = 80/1978 (4%)
Strand=Plus/Plus
Query 295 TGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTC-GACTGGTG 353
|||||||| ||||||||| ||| | |||||| | ||||| ||||||||||| | ||||||
Sbjct 168 TGATGGAAGTATTGCTCTGAATTCGATTCAACGACGACATGCTAGAGTTTCTG-CTGGTG 226
Query 354 ATATGGTATCTGTTAGC-AGATTTGTTCCTCCTGAAAATTTTGATC-TGGCTATGCTGAC 411
| || || |||| || | |||||| |||||||||||| ||||| | || || | |||||
Sbjct 227 ACATTGTTTCTG-TAACAAGATTTATTCCTCCTGAAAGCTTTGA-CTTGACTGTTCTGAC 284
Query 412 -GCTGGAGTTGGAATTTGTGAAGAAAGGAACTAAAAGCGAGCAGGTTGATGCTGCTCTCC 470
| | || || |||||||| || ||||| ||||||| || ||| |||||||| ||||||
Sbjct 285 AG-TTGACTTAGAATTTGTCAAAAAAGGGACTAAAAATGAACAGATTGATGCTACTCTCC 343
Query 471 TTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAA-AGCG 529
| || || || || |||| ||||| ||| |||||||||||||| ||||| || || ||
Sbjct 344 TCTCAACTCAACTGAAGAAGAAATTCACTAACCAGGTCTTGACAGTAGGTCA-AAGAGTT 402
Query 530 ACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGG--AT-GT---T 583
||||||||||||||||||||||| |||||| |||||||||||||||||| || || |
Sbjct 403 ACATTTGAGTATCATGGAACTAACTACATTTTTACGGTCAATCGAGCGGTTATAGTGGCT 462
Query 584 GAGGGTCAGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATT 643
|| | | || | || || || | || ||||||||| || | | ||| || || ||| ||
Sbjct 463 GATGATGAGAACCAAACTAATTGTATCGAAAGAGGGATGATTTGTAAGGATACATATTTT 522
Query 644 GTGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGC 703
|||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| || |
Sbjct 523 GTGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTATCAACCAACGAGAATCTGTTA-C 581
Query 704 A-GCAATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTT-G 761
| |||| ||||| ||| | ||||| ||||||||| | || || || ||||||||| || |
Sbjct 582 AAGCAAGATATTTAAAGAAAAGGAGTTTAACCTTCAATCCCTAGGTATAGGTGGT-TTAG 640
Query 762 GTGCAGAGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTC-CTCAT 820
|||||||||||| || ||||||| ||||||||||| |||||||| || |||||| | ||
Sbjct 641 GTGCAGAGTTTGTTGCTATATTTCGAAGAGCTTTTACTTCTCGTATACTTCCTCGCG-AT 699
Query 821 GTCACCAGCAGACT-GGGAATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGG 879
||| | |||| | ||| |||||| ||||||||||||||||| ||||||||||| ||
Sbjct 700 GTCGTGAACAGAATTGGGGC-AAAGCACGTTAAAGGGATGCTTCTGTTTGGACCTCCCGG 758
Query 880 TACTGGCAAAACCCTT-ATGGCACGGCAAATTGG-AAAGATGCTTAATGGAAAGGATCCA 937
||||||||| ||| || |||||||| |||||||| ||| ||||||||||||||||| |||
Sbjct 759 TACTGGCAAGACC-TTGATGGCACGCCAAATTGGCAAA-ATGCTTAATGGAAAGGAGCCA 816
Query 938 AAGATCGTTAATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTA 997
|||||||||||||| ||||| ||||| |||||||| || || ||||||||||||||||||
Sbjct 817 AAGATCGTTAATGGTCCTGAAGTGCTAAGCAAGTTCGTCGGCGAGACAGAAAAGAATGTA 876
Query 998 AGAGA-CTTATTTGCTGATGCTGAGCAA-GACCAGAGGACCCTTGGTGATGCTAGTGAGT 1055
||||| || |||||||||||||| || |||||||| || ||||||||||||||||||
Sbjct 877 AGAGATCTG-TTTGCTGATGCTGAA-AATGACCAGAGAACACTTGGTGATGCTAGTGAGC 934
Query 1056 TGCATGTCATTATTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAG 1115
| ||| |||||||||| ||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct 935 TACATATCATTATTTTCGATGAAATTGATGCTATTTGTAAGTCAAGAGGGTCAACCAGGG 994
Query 1116 ATGGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGG 1175
|||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 995 ATGGGACAGGTGTCCATGATGGTATTGTAAACCAGCTCTTGACAAAGATAGATGGTGTTG 1054
Query 1176 AGGCCTTAAACAATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAG 1235
|||| || ||||||||||| || |||||||||||||| ||||| ||| ||||||||||||
Sbjct 1055 AGGCTTTGAACAATGTTTTACTAATTGGAATGACAAATAGAAAAGATATGCTTGATGAAG 1114
Query 1236 CTCTTTTAAGGCCTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTG 1295
|||||||||||||||||||||| |||||||| |||| || || ||||| ||||||| ||
Sbjct 1115 CTCTTTTAAGGCCTGGAAGATTAGAGGTTCATATTGAAATTAGTCTTCCCGATGAAGTTG 1174
Query 1296 GGCGTCTACAAATTCTTCAGATTCATACAAATAAGATGAAGGAAAATTCTTTCCTTGGGA 1355
| ||| ||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 1175 GACGTTTACAAATTCTTCAGATTCATACAAAGAAAATGAAGGATAATTCTTTTCTTTCTC 1234
Query 1356 CTGATATCAATCTCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAGCTTG 1415
||||| ||||||||||||| ||||||||| | ||||| |||||||||||||| |||||||
Sbjct 1235 CTGATGTCAATCTCCAAGAACTTGCTGCTAGGACAAAGAATTACAGTGGTGCTGAGCTTG 1294
Query 1416 AAGGTGTTGTTAAAAGTGCTACATCATATGCATTAAACAGACAACTAAGCATGGATGATC 1475
||||||| || |||||||| ||||||||||| || || |||||||| |||||||| ||||
Sbjct 1295 AAGGTGTAGTAAAAAGTGCAACATCATATGCTTTCAATAGACAACTGAGCATGGAAGATC 1354
Query 1476 TTACAAAGCCTGTGGAAGAAGAGAATATCAAGATCACTATGGAGGATTTTCTCCACGC-- 1533
| |||||||| ||||| ||||| ||||| || || |||||||| |||||||| || ||
Sbjct 1355 TAACAAAGCCAGTGGATGAAGAAAATATTAAAATTACTATGGATGATTTTCTTCAAGCCC 1414
Query 1534 TATCTATGAAGTTCAACCTGCATTTGGAGCCTCCACAGATGACCTAGAGCGCTGCAGAC- 1592
|| || |||||| ||||||||||||||||||| || | ||||| || | ||||||||
Sbjct 1415 TA-CTC-GAAGTTAAACCTGCATTTGGAGCCTCTTCAAAAGACCTTGAACTCTGCAGACC 1472
Query 1593 TCAATGGGATG-GTAGATTGTGGTCATCGGCATAA-TCACATTTACAAAAGAG-CTATGC 1649
| || ||||| || ||||||||| ||||||| || | |||| ||| |||||| | |||
Sbjct 1473 T-AA-GGGATTTGTGGATTGTGGTTATCGGCAAAAGT-ACATCTACGAAAGAGTC-ATGT 1528
Query 1650 TTCTAGTCGAGCAAGTTAAAGTTA--GTACTAGAAGTCCTCTAGTCACTTGCCTTCTGGA 1707
|||| || |||||||||||||| | | | || | |||||| | ||||||||||||| |
Sbjct 1529 TTCTTGTTGAGCAAGTTAAAGTCAACGAAATA-A-GTCCTCCACTCACTTGCCTTCTTCA 1586
Query 1708 GGGGCCCAGTGGAAGTGGGAAAACTGCTTTAGCAGCAACAATTGGTATCGATAGTGACTT 1767
||| | ||||||||||| |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct 1587 TGGGTCTAGTGGAAGTGGAAAAACTGCGTTAGCCGCGACCATTGGCATCGACAGTGACTT 1646
Query 1768 CCCATATGTTAAGATAGTTTCTGCGGAAACTATGATTGGTCTTTC-TGAGAGCACAAAAT 1826
||||||||| || ||||| ||||| || |||||| ||| ||| | |||||||| |||||
Sbjct 1647 CCCATATGTCAAAATAGTCTCTGCAGAGGCTATGAATGGCCTT-CATGAGAGCAAAAAAT 1705
Query 1827 GTGCTCACATTGTCAAGGTCTTTGAGGATGCATATAAATCTCCAATGAGCATCA-TTATC 1885
| || |||||| |||||||||||| |||||||| ||||| ||||||||||| | |||||
Sbjct 1706 GCGCACACATTACCAAGGTCTTTGAAGATGCATACAAATCACCAATGAGCAT-AGTTATC 1764
Query 1886 CTTGACGATATTGAAAGATTGTTGGAATTCA-TAGCAATCGGTCCTCGCTTTTCAAAC-A 1943
||||||||||||||||| ||||||| | || | | ||| || || || ||||||||| |
Sbjct 1765 CTTGACGATATTGAAAGGCTGTTGGAGTACACT-GAAATTGGACCGCGATTTTCAAACGA 1823
Query 1944 TAAT--TTCACAGACGCTGATGGTCCTTC-TCAAAC-GACTTCCTCCTAAGG-GGAAG-A 1997
||| |||| | | | || | | ||| |||||| | || |||||| || ||||| |
Sbjct 1824 -AATCCTTCA-AT-CATT-ATTGACTTTCCTCAAACAGTCT-CCTCCT--GGTGGAAGCA 1876
Query 1998 AACTTCTCGT-CTTTGGGACAACAAGTGAAGTAACCTTCTTAGAGTCTGTTGGTAT-CTC 2055
||||||| || ||| || ||||||||||||||||| |||||| | ||||||||| | |
Sbjct 1877 AACTTCTTGTACTT-GGTACAACAAGTGAAGTAACGTTCTTAAAATCTGTTGGTTTGCG- 1934
Query 2056 TGATTGCTTCT-CTGTCAC-TCACTCTGTTCCGAC-ACTGCAAAA-AGAGGACGCAAAGA 2111
| | ||| | |||| || | ||| |||| | | | || | | |||||| || | ||
Sbjct 1935 TAAAA-CTTTTTCTGTTACGT-ACTATGTTTC-ATTATTG-AGGACAGAGGATGCCATGA 1990
Query 2112 AGGTGCTAAATCAGCTTAACCTCTTCTCAGAGGATGATGTTGATTCAGCTGCAGAGGCTC 2171
|||||||| | || || ||| | |||||||| |||||| | || |||| | || || |
Sbjct 1991 AGGTGCTAGAGCAACTAAACGTGTTCTCAGAAGATGATATCGAAGAAGCTTCTGAAGCCC 2050
Query 2172 TCAATGACATGCCAATCAAGAAGATTTACATGCTAATAGAAATGGCTGCGCAAGGAGA 2229
| |||| || ||||| ||| || | ||| | || || || ||||| || ||| ||||
Sbjct 2051 TTGATGATATTCCAATAAAGCAGCTATACCTTCTTATGGAGATGGCAGCTCAAAGAGA 2108
> Ahg890006 jgi|Araly1|890006|Al_scaffold_0007_1992
Length=2112
Score = 1016 bits (550), Expect = 0.0
Identities = 929/1109 (84%), Gaps = 38/1109 (3%)
Strand=Plus/Plus
Query 295 TGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTC-GACTGGTG 353
|||||||| ||||||||| ||| | |||||| | ||||| ||||||||||| | ||||||
Sbjct 135 TGATGGAAGTATTGCTCTAAATTCGATTCAACGACGACATGCTAGAGTTTCTG-CTGGTG 193
Query 354 A-TATGGTATCTGTTAGC-AGATTTGTTCCTCCTGAAAATTTTGATC-TGGCTATGCTGA 410
| || |||| || || | |||||| ||||||||||||| ||||| | || || | ||||
Sbjct 194 ACAAT-GTATATG-TAACAAGATTTATTCCTCCTGAAAACTTTGA-CTTGACTGTTCTGA 250
Query 411 C-GCTGGAGTTGGAATTTGTGAAGAA-AGGAACTAAAAGCGAGCAGGTTGATGCTGCTCT 468
| | | || || |||||||| || || ||| ||||||| ||| ||| |||||||| ||||
Sbjct 251 CAG-TTGACTTAGAATTTGTTAA-AAGAGGGACTAAAAACGAACAGATTGATGCTACTCT 308
Query 469 CCTTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAAAGC 528
||| || ||||| || |||| ||||| || || ||||||||||| |||||||||| ||
Sbjct 309 CCTCTCAACCCAACTGAAGAAGAAATTCATTAATCAGGTCTTGACAGTAGGCCAGAGAGT 368
Query 529 GACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGGATGTTGAGG- 587
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 369 TACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCAGTTGTACTGGC 428
Query 588 -GTC-AGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATT-G 644
| | || | || || || || || ||||||||| || || ||| || || ||| || |
Sbjct 429 AGACGAGAACCAAACTAATGGTATCGAAAGAGGGATGATCGGTAACGATACATAT-TTCG 487
Query 645 TGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGC- 703
||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||| |
Sbjct 488 TGTTTGAAGCATCAAATGCAAGTGGTATAAAGATTATCAACCAACGAGAGGCTGCTA-CT 546
Query 704 AGCAATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTTGG- 762
||||| ||||| || | ||||| ||||||||| | || ||||| || ||||| |||
Sbjct 547 AGCAAAATATTTAAGGAAAAGGAGTTTAACCTTCAATCCCTGGGTATTGGTGG-CTTAAA 605
Query 763 TGCAGAGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTCATGT 822
||||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||| |
Sbjct 606 TGCAGAGTTTGTTGATATATTCCGAAGAGCATTTGCTTCTCGTATATTTCCTCCTCATCT 665
Query 823 CACC-AGCAGACT-GGGA-ATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGG 879
|| | |||||| ||| | ||| || |||| |||||||||||||||||||||||||||
Sbjct 666 CAATTA-CAGACTTGGGGCA-AAA-CACGTTAGAGGGATGCTTCTTTTTGGACCTCCTGG 722
Query 880 TACTGGCAAAACCCTT-ATGGCACGGCAAATTGGAAAGATGCTTAATGGAAAGGATCCAA 938
||||||||| ||| || || ||||| |||| |||||| ||||| |||||||| || ||||
Sbjct 723 TACTGGCAAGACC-TTGATCGCACGCCAAACTGGAAAAATGCTCAATGGAAACGAGCCAA 781
Query 939 AGATCGTTAATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTAA 998
|||| || ||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||
Sbjct 782 AGATAGTGAATGGTCCTGAAGTGCTAAGCAAGTTTGTCGGTGAGACCGAAAAGAATGTAA 841
Query 999 GAGACTTATTTGCTGATGCTGAGCAA-GACCAGAGGACCCTTGGTGATG-CTAGTGAGTT 1056
||||| | ||||||||||||||| || |||||||| ||||||||||||| | |||||| |
Sbjct 842 GAGACCTGTTTGCTGATGCTGAG-AATGACCAGAGAACCCTTGGTGATGAC-AGTGAGCT 899
Query 1057 GCATGTCATTATTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAGA 1116
|||||||||||| || ||||| || ||||||||||| ||||||||||| |||| ||| ||
Sbjct 900 GCATGTCATTATCTTCGATGAAATCGATGCTATTTGTAAGTCAAGAGGATCAAGCAGGGA 959
Query 1117 TGGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGA 1176
|||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||||
Sbjct 960 TGGCACAGGTGTCCATGACAGTATTGTGAACCAGCTCCTGACCAAGATAGATGGTGTGGA 1019
Query 1177 GGCCTTAAACAATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGC 1236
|||||| ||||||||||| || || |||||||| ||| | |||||| |||||||||||||
Sbjct 1020 GGCCTTGAACAATGTTTTACTTATCGGAATGACTAACCGGAAGGATATGCTTGATGAAGC 1079
Query 1237 TCTTTTAAGGCCTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTGG 1296
|||| ||||||||||||| || |||||||| | ||||| ||||||||||||| |||||
Sbjct 1080 TCTTCTAAGGCCTGGAAGGTTAGAGGTTCATATAGAGATTGGCCTTCCTGATGATGCTGG 1139
Query 1297 GCGTCTAC-AAATTCTTCAGATTCATACAAATAA-GATGAAGGAAAATTCTTTCCTTGGG 1354
||| | | ||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1140 ACGTTT-CGAAATTCTTCAGATTCATACGAA-AATGATGAAGGAAAATTCTTTCCTTGCT 1197
Query 1355 ACTGATATCAATCTCCAAGAGCTTGCTGC 1383
||||| ||||||| |||||||||| |||
Sbjct 1198 CCTGATGTCAATCTTCAAGAGCTTG-TGC 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98349012590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5