BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04930.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943267 jgi|Araly1|943267|scaffold_603811.1 525 3e-148
> Ahg943267 jgi|Araly1|943267|scaffold_603811.1
Length=581
Score = 525 bits (284), Expect = 3e-148
Identities = 348/377 (92%), Gaps = 12/377 (3%)
Strand=Plus/Plus
Query 158 GTCATGGCTACAGATTTCTTTTGGTCTTACACCGATGAGCCTCATGCTTCGAGGAGACGT 217
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 19 GTCATGGCTACAGATTTCTTTTGGTCTTACACCGATGAGCCTCATGCTTCTAGGAGACGT 78
Query 218 CAGATTCTGTCTTGTTACCCTCAGATTAGACAACTCTTTGGTCCTGATCCATGGGCTTTC 277
||||||| || | |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 79 CAGATTCCGTATCGTTATCCTCAGATTAGACAACTATTTGGTCCTGATCCATGGGCTTTC 138
Query 278 CTCAAGATCACATTAGTAGTAATTCTTCAACTCTCAACAGCTGCAATCCTTCACAACTCT 337
||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 139 CTCAAGATCGCATTAGTAGTTATTCTTCAACTTTCAACAGCTGCAATCCTTCACAACTCA 198
Query 338 GGATGGCTCAAGATTCTATCCATTGCTTACTTCTTTGGATCATTCCTCAACCACAATCTC 397
|||||||||||||||||| |||||| | |||||||||||| |||||||||
Sbjct 199 GGATGGCTCAAGATTCTAGCCATTG-----------G-ATCATTCCTCAATCACAATCTC 246
Query 398 TTCTTAGCAATCCATGAGCTAAGTCACAACCTTGCCTTTTCAACTCCTGTCTACAATCGT 457
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 247 TTTTTAGCAATCCATGAGCTAAGTCACAACCTTGCCTTTTCAACTCCCGTCTACAATCGT 306
Query 458 TGTCTCGGTATTTTCGCAAATCTCCCAATCGGTGTACCAATGTCAGTAACTTTCCAAAAA 517
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 307 TGGCTCGGTATTTTCGCCAATCTCCCAATCGGTGTACCAATGTCGGTAACTTTCCAAAAA 366
Query 518 TACCATCTCGAGCATCA 534
|||||||||||||||||
Sbjct 367 TACCATCTCGAGCATCA 383
Score = 315 bits (170), Expect = 7e-85
Identities = 188/197 (95%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 833 GAACATTATGTTTTTAACCCGAATCAAGAGACTTATTCGTATTACGGTCCATTGAATCTA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 GAACATTATGTTTTTAACCCGAATCAAGAGACTTATTCGTATTACGGTCCATTAAATCTG 444
Query 893 CTAACATGGAGTGTTGGTTACCATAACGAGCATCACGATTTCCCGAGGATACCGGGAAAT 952
||||||||| |||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct 445 CTAACATGGGGTGTCGGCTACCATAACGAGCACCATGAGTTCCCGAGGATACCGGGAAAT 504
Query 953 AAGCTGCATTTGGTGAAGGAGATTGCAGGAGAGTATTATGAAGGATTGGAGTCGTATAAG 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 505 AAGCTGCATTTGGTGAAGGAGATTGCAGGAGAGTATTATGAAGGATTGGAGTCGTAAAAG 564
Query 1013 TCATGGTCACAAGTGAT 1029
|||||||||||||||||
Sbjct 565 TCATGGTCACAAGTGAT 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5