BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04950.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943269 jgi|Araly1|943269|scaffold_603813.1 2431 0.0
> Ahg943269 jgi|Araly1|943269|scaffold_603813.1
Length=1508
Score = 2431 bits (1316), Expect = 0.0
Identities = 1432/1488 (96%), Gaps = 7/1488 (0%)
Strand=Plus/Plus
Query 43 CCTCTTCGAAGATGAGC-GGTACGGTGAAGGATATCGTTTCAAAGGCGGAGCTTGATAAC 101
||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 14 CCTCTTCGAAGATGA-CTGGTACGGTGAAGGATATCGTTTCAAAGGCAGAGCTTGATAAC 72
Query 102 TTGCGCCAGAGCGGCGCACCAGTCGTGCTTCACTTCTGGGCTTCTTGGTGTGATGCTTCG 161
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 73 TTGCGCCAGAGCGGCGCACCAATCGTGCTTCACTTCTGGGCTTCTTGGTGTGACGCTTCG 132
Query 162 AAGCAGATGGATCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTT 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AAGCAGATGGATCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTT 192
Query 222 AGGGTTGAAGCTGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCTGTGCCT 281
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AGGGTAGAAGCTGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCTGTGCCT 252
Query 282 TATTTCGTCTTCTTCAAGGATGGTAAAACTGTGGATACACTTGAGGGTGCAGATCCATCA 341
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 253 TATTTCGTCTTCTTCAAGGATGGCAAAACTGTGGATACACTTGAGGGTGCAGATCCATCA 312
Query 342 AGTTTAGCTAATAAGGTTGGCAAAGTTGCTGGTTCTAGTACTTCTGCGGAGCCTGCTGCT 401
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 313 AGTTTAGCTAATAAGGTAGGCAAAGTTGCTGGTTCTAGTACCTCTGCGGAGCCTGCTGCT 372
Query 402 CCTGCAAGCTTAGGGTTGGCTGCTGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCG 461
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 373 CCTGCAAGCTTAGGGTTGGCTGCAGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCG 432
Query 462 AAAGCTTCTTTACAAGACCGAGCTCAGCCTGTATCTACCGCCGATGCTCTCAAGAGCCGT 521
|||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 433 AAAGCTACTGTACAAGACCGAGCT---CCTGTATCTACCGCTGATGGTCTCAAGAGCCGT 489
Query 522 TTGGAAAAGCTCACTAATTCTCACCCTGTCATGTTATTCATGAAAGGTATTCCTGAAGAG 581
|| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 490 TTCGAAAAACTCACTAATTCTCAACCTGTCATGTTATTCATGAAAGGTAATCCTGAGGAG 549
Query 582 CCTAGGTGTGGGTTTAGCAGGAAAGTAGTTGACATTTTGAAAGAGGTTAACGTTGATTTT 641
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 550 CCTAGGTGTGGGTTTAGCAGGAAAGTAGTTGACATTTTGAAAGAGGAGAAGGTTGATTTT 609
Query 642 GGAAGTTTTGACATACTATCGGATAACGAAGTGCGAGAGGGTTTGAAGAAATTCTCTAAC 701
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 610 GGAAGTTTTGACATACTATCGGACAACGAAGTGCGAGAGGGTTTGAAGAAATTCTCTAAC 669
Query 702 TGGCCAACGTTTCCTCAGCTGTACTGCAACGGAGAGCTTCTTGGTGGAGCTGATATCGCA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TGGCCAACGTTTCCTCAGCTGTACTGCAACGGAGAGCTTCTTGGTGGAGCTGATATCGCA 729
Query 762 ATAGCGATGCACGAGAGCGGTGAACTAAAAGATGCTTTCAAAGATCTTGGGATCACGACA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 730 ATAGCGATGCACGAGAGCGGTGAACTAAAAGATGCTTTCAAAGATCTTGGGATCATTACA 789
Query 822 GTTGGTTCAAAAGAAAGTCAGGATGAAGCTGGAAAAGGAGGAGGGGTTAGTTCAGGAAAC 881
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 790 GTTGGTTCAAAAGAAAGTCAGGATGAAGCTGGAAAAGGAGGAGGGGTAAGTTCAGGCAAC 849
Query 882 ACAGGCTTAAGTGAGACCCTCCGAGCTCGGCTCGAAGGTCTGGTCAATTCCAAACCAGTT 941
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 850 ACAGGCTTAAGCGAGACCCTCCGAGCTCGGCTCGAAGGTCTGGTCAATTCGAAACCAGTT 909
Query 942 ATGCTGTTCATGAAAGG-AAGACCAGAAGAACCAAAGTGTGGGTTCAGTGGGAAAGTGGT 1000
||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 910 ATGCTGTTCATGAAAGGGAA-ACCAGAAGAACCAAAGTGTGGGTTTAGTGGGAAAGTGGT 968
Query 1001 TGAAATCCTCAACCAAGAAAAAATCGAGTTTGGGAGTTTCGATATCCTCTTAGATGACGA 1060
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 969 TGAAATTCTCAACCAAGAAAAAATCGAGTTTGGGAGTTTTGATATACTCTTAGATGATGA 1028
Query 1061 AGTTCGCCAAGGCCTTAAAGTGTATTCAAACTGGTCAAGCTATCCTCAGCTTTACGTGAA 1120
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AGTTCGTCAAGGGCTTAAAGTGTATTCAAACTGGTCAAGCTATCCTCAGCTTTACGTGAA 1088
Query 1121 AGGCGAGCTTATGGGTGGATCAGACATTGTCTTGGAGATGCAAAAGAGCGGTGAGCTGAA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 AGGCGAGCTTATGGGTGGATCAGACATTGTCTTGGAGATGCAAAAGAGCGGTGAGCTGAA 1148
Query 1181 AAAGGTCTTGACCGAGAAAGGGATCACTGGAGAACAGAGTCTTGAAGATAGATTGAAGGC 1240
|||||| ||| |||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1149 AAAGGTTTTGTCCGAGAAAGGAATAACCGGAGAACAGAGTCTTGAAGATAGATTGAAGGC 1208
Query 1241 ACTGATCAATTCCTCGGAAGTAATGCTATTCATGAAAGGTTCACCAGATGAACCGAAATG 1300
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1209 GTTGATCAACTCCTCGGAAGTAATGCTTTTCATGAAAGGTTCACCAGATGAACCGAAATG 1268
Query 1301 CGGATTTAGCTCCAAAGTTGTGAAAGCATTGAGAGGAGAAAACGTGAGTTTCGGATCGTT 1360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1269 CGGATTTAGCTCCAAAGTTGTGAAAGCACTGAGAGGAGAAAACGTGAGTTTCGGATCGTT 1328
Query 1361 TGATATCTTGACTGATGAAGAAGTAAGGCAAGGGATTAAGAATTTCTCAAACTGGCCAAC 1420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TGATATCTTGACCGATGAAGAAGTAAGGCAAGGGATTAAGAATTTCTCAAACTGGCCAAC 1388
Query 1421 TTTTCCTCAGCTATACTACAAAGGTGAGTTAATTGGAGGATGTGATATCATTATGGAGCT 1480
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 ATTTCCTCAGCTTTACTATAAAGGTGAGTTAATTGGAGGATGTGATATCATTATGGAGCT 1448
Query 1481 AAGTGAGAGTGGTGATCTCAAAGCAACTCTATCCGAGTAAGTAATATA 1528
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1449 AAGTGAGAGTGGTGATCTCAAAGCAACTCTATCTGAGTAAGTAATATA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5