BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04960.1
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490141 jgi|Araly1|490141|fgenesh2_kg.6__3275__AT4G04960.1 3301 0.0
> Ahg490141 jgi|Araly1|490141|fgenesh2_kg.6__3275__AT4G04960.1
Length=2198
Score = 3301 bits (1787), Expect = 0.0
Identities = 2080/2218 (94%), Gaps = 34/2218 (2%)
Strand=Plus/Plus
Query 14 tcttcgtctt-gttcttcttcatctaccatgaaagctcttctctttcttcttaccctttt 72
|||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TCTTCGTCTTCG-TCTTCTTCCTCTACCATGAAAGCTCTTCTCTTTCTTCTCACCCTTTT 59
Query 73 cCTCATCCTCCCAAACCCAATCTCAGCCATTGATTTCATCTTCAACGGCTTCAATGACTC 132
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 60 CCTCATCCTTCCAAACCCAATTTCAGCCATTGATTTCGTCTTCAACGGCTTCAATGACTC 119
Query 133 ATCATCTAATGTCTCCCTCTTCGGGATCGCAACAATCGAATCAAAAATCCTAACTTTAAC 192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCATCTAATGTCTCCCTCTTCGGGATCGCAACAATCGAATCAAAAATCCTAACTTTAAC 179
Query 193 AAACCAAACATCGTTTGCAACTGGTCGTGCTCTATACAACAGAACCATCCGTACAAAAGA 252
|||||||||||||||||||||||||||||||||||||| || || |||| | ||||||||
Sbjct 180 AAACCAAACATCGTTTGCAACTGGTCGTGCTCTATACAGCAAAATCATCAGGACAAAAGA 239
Query 253 TCCAATCACATCCTCTGTTTTACCTTTCTCTACTTCTTTCATCTTCACCATGGCTCCTTA 312
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCAATCACTTCCTCTGTTTTACCTTTCTCTACTTCTTTCATCTTCACCATGGCTCCTTT 299
Query 313 CAAGAACACACTTCCTGGTCACGGAATCGTCTTCCTCTTTGCA-CCATCCACTGGAATCA 371
|||||||| |||||||||||||| |||||||||||||| ||| ||| ||||||||||||
Sbjct 300 TAAGAACACGCTTCCTGGTCACGGCATCGTCTTCCTCTTCGCACCCA-CCACTGGAATCA 358
Query 372 ACGGTTCTAGCTCTGCTCAACACTTAGGTCTCTTCAATTTGACTAACAATGGTAACCCTA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACGGTTCTAGCTCTGCTCAACACTTAGGTCTCTTCAATTTGACTAACAATGGTAACCCTA 418
Query 432 GTAATCACATCTTTGGAGTTGAGTTTGATGTCTTTGCTAATCAAGAATTTAGTGACATCG 491
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 419 GTAATCACATCTTTGGAGTTGAGTTTGATGTTTTTGCTAATCAAGAATTTAGCGACATCG 478
Query 492 ATGCTAATCATGTCGGAATTGATGTTAATTCACTTCATTCAGTATATTCTAACACTTCTG 551
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 479 ATGCTAATCATGTCGGAATTGATGTTAATTCACTTCATTCAGTCTATTCGAACACTTCTG 538
Query 552 GTTATTGGTCTGATGATGGAGTGGTGTTTAAGCCATTGAAGCTTAACGATGGAAGAAACT 611
|||||||||||||| |||||| | | || ||||||||||||||||||||||||||||| |
Sbjct 539 GTTATTGGTCTGATAATGGAGAG-T-TT-AAGCCATTGAAGCTTAACGATGGAAGAAATT 595
Query 612 ATCAAGTTTGGATTGATTATAGAGATTTTGTAGTTAATGTTACTATGCAAGTCGCTGGTA 671
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 596 ATCAAGTTTGGATTGATTATAGAGATTTTATAGTTAATGTTACTATGCAAGTTGCTGGTA 655
Query 672 AGATTCGACCTAAGATTCCTTTGCTTAGTACGTCTTTGAATCTCTCTGATGTTGTGGAAG 731
||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 656 AGATTAGACCTAAGACTCCTTTGCTTACTACGTCTTTGAATCTCTCTGGTGTTGTGGAAG 715
Query 732 ATGAGATGTTTGTTGGATTCACTGCTGCTACAGGGAGATTGGTTCAGAGTCATAAGATCT 791
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 716 ATGAGATGTTTGTTGGATTCACTGCAGCTACAGGGAGATTGGTTCAGAGTCATAAGATTT 775
Query 792 TAGCTTGGAGTTTTAGTAATTCGAATTTCTCGTTGAGTAATAGTTTGATCACTACTGGTT 851
||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||||
Sbjct 776 TAGCTTGGAGTTTTAGTAACTCTAATTTCTCTTTGAGTGATAGTTTGATCACTACTGGTT 835
Query 852 TACCTTCGTTTGTTTTACCTAAGGACTCGATTGTTAAAGCGAAAtggtttgtttttgtgt 911
| |||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 836 TGCCTTCGTTTGTTCTGCCTAAGGACTCGATTCTTAAAGCTAAATGGTTTGTTTTTGTGT 895
Query 912 tggtgttgatctgtttcttggttgttgct-ttggttggtttggtgttgtttgctgtggtg 970
||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 896 TGGCATTGATCTGTTTCTTGGTTGTTGCGGTTG-TGGGTTTGGTGTTGTTTGCTGTGGTG 954
Query 971 AGAAAGAGATTAGAGAGGGCAAGGAAGAGAGCGTTGATGGAGGATTGGGAGATGGAGTAT 1030
||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 955 AGAAAGAGATTGGAGAAGGCGAGGAAGAGAGCGTTGATGGAGGATTGGGAAATGGAGTAT 1014
Query 1031 TGGCCTCATCGGATTCCGTATGAGGAGATTGAATCCGGCACTAAGGGGTTTGATGAGAAG 1090
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1015 TGGCCTCATCGGATTCCGTATGAGGAGATTGATTCCGGGACTAAGGGGTTTGATGAGAAG 1074
Query 1091 AATGTGATTGGGATTGGCGGGAATGGGAAAGTTTATAAAGGTTTGTTACAAGGAGG-GGT 1149
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1075 AATGTGATTGGGATTGGTGGGAATGGGAAAGTGTATAAAGGTTTGTTACAAGGAGGAGGT 1134
Query 1150 TGTGGAAGTTGCGGTTAAGCGGATTTCGCAGGAGAGTAGCGACGGGATGAGAGAGTTTGT 1209
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1135 -GTGGAAGTTGCGGTTAAGCGGATTTCGCAGGAGAGTAGCGACGGGATGAGGGAGTTTGT 1193
Query 1210 GGCTGAGATATCGAGTCTTGGGCGGTTAAAGCACCGGAATTTAGTTTCTTTAAGAGGATG 1269
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1194 GGCTGAGATCTCAAGTCTTGGGCGGTTAAAGCACCGGAATTTAGTTTCTTTAAGAGGTTG 1253
Query 1270 GTGCAAGAAGGAGGTTGGTAGTTTCATGTTGGTTTATGATTACATGGAGAATGGAAGTTT 1329
||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 1254 GTGCAAGAAGGAGATTGGAAGTTTCATGTTGATATATGATTACATGGAGAATGGAAGTTT 1313
Query 1330 AGATCGATGGATATTCGAAAACGATGAGAAGATTACTACCCTTAGTTGCGAAGAGAGAAT 1389
||| ||||||||||||||||||||| |||||| ||||| ||||| || |||||||| ||
Sbjct 1314 AGACCGATGGATATTCGAAAACGATCAGAAGAAAACTACGCTTAGCTGTGAAGAGAGGAT 1373
Query 1390 TCGTATTTTGAAAGGTGTAGCTTCAGGAATATTGTATTTGCATGAAGGATGGGAGTCTAA 1449
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1374 TCGGATTTTGAAAGGTGTAGCTTCGGGAATATTGTATTTGCATGAAGGATGGGAATCTAA 1433
Query 1450 GGTTTTACATAGAGATATTAAAGCTAGTAATGTTTTACTTGACCGAGATATGATACCGAG 1509
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1434 GGTTTTACATAGAGACATTAAAGCGAGTAATGTGTTACTTGACCGAGATATGATACCAAG 1493
Query 1510 GCTTAGTGATTTTGGGTTAGCTCGGGTTCATGGACACGAGCAACCGGTTAGGACCACGAG 1569
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1494 GCTTAGTGATTTTGGGTTAGCTCGGGTTCATGGACACGAGCAAGCGGTTAGGACCACAAG 1553
Query 1570 GGTGGTTGGTACAGCTGGCTATTTGGCTCCTGAAGTGGTTAAGACGGGGCGTGCATCGAC 1629
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1554 GGTGGTTGGTACAGCTGGCTATTTGGCTCCTGAAGTTGTTAAGACTGGGCGTGCATCGAC 1613
Query 1630 ACAGACCGATGTTTTTGCTTACGGGATATTGGTTCTTGAAGTAATGTGTGGGAGAAGACC 1689
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1614 ACAAACCGATGTTTTTGCTTACGGGATACTGGTTCTTGAAGTAATGTGTGGGAGAAGACC 1673
Query 1690 TATTGAAGAAGGGAAGAAACCGTTGATGGATTGGGTTTGGGGATTAATGGAAAGAGGTGA 1749
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1674 TATTGAAGAAGGGAAGAAACCGTTAATGGATTGGGTTTGGGGATTAATGGAAAGAGGTGA 1733
Query 1750 GATTCTAAATGGGCTTGATCCACAGATGATGATGACACAAGGCGTAACAGAAGTCATTGA 1809
||||||||| ||||||||||||||||||||||||||||||| | || | | ||
Sbjct 1734 GATTCTAAACGGGCTTGATCCACAGATGATGATGACACAAG-C----CA----T--T-GA 1781
Query 1810 TGAAGCTGAAAGAGTTTTGCAGCTTGGATTGCTTTGTGCACATCCTGATCCGGCCAAAAG 1869
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1782 TGAAGCTGAAAGAGTTTTGCAGCTTGGATTGCTTTGCGCACATCCTGATCCGGCTAAGAG 1841
Query 1870 ACCGTCGATGAGACAAGTGGTTCAAGTGTTTGAAGGTGATAAGGCTGAGATCTTTGAAGC 1929
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1842 ACCGTCGATGAGACAAGTGGTTCAAGTGTTTGAAGGTGACAAAGCTGAGATATTTGAAGC 1901
Query 1930 AGAAAGTAGTGAAGATGTCGAGTCATGGATGTTGATGAAGATGGGATCTCGTGGAAGCTC 1989
|| |||||||||||||| || ||||||||||||| ||||||||||||||| |||| |||
Sbjct 1902 GGACAGTAGTGAAGATGTTGAATCATGGATGTTGAAGAAGATGGGATCTCGGGGAATCTC 1961
Query 1990 GCGAGAGTTTTGGTATGGAAGCTCATCACATCCGACGATAGAGCAGATTAGACTTCAGTC 2049
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1962 GCGAGAGTTTTGGTATGGAAGCTCATCACATCCAACGATAGAACAGATTAGACTTCAGTC 2021
Query 2050 TTTGTCTGTGTCTCTTTCGTCTTGGAACAGCTCAATTTTAGAAGGGAGGTGAT---GA-T 2105
||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 2022 TTTGTCTGTGTCTCTTTCGTCTTGGAACAGCTCGATTTTAGAAGGGAGGTGATCATGAAT 2081
Query 2106 ----GATGAAGAAATGGCTTGAGGAACCTAAAGAATGTAGTTATTTTTGTGGC-TTTACT 2160
|||||| ||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 2082 TCATGATGAACAAAAGGCTTAAGGAACCTCAAGAATGTAGTTATTTTTGTGGCCTTTACT 2141
Query 2161 TTGTTACTTGTTTTGTACATATACG-TATTTGTAAACGCATTTCATTATACATGTAtt 2217
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2142 TTGTTACTTGTTTTGTACATATACGGT-TTTGTAAACGCATTTCATTATACATGTATT 2198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87798014725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5