BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04980.1
Length=2749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490143 jgi|Araly1|490143|fgenesh2_kg.6__3277__AT4G04980.1 1705 0.0
Ahg895572 jgi|Araly1|895572|Al_scaffold_0006_3568 654 0.0
> Ahg490143 jgi|Araly1|490143|fgenesh2_kg.6__3277__AT4G04980.1
Length=1941
Score = 1705 bits (923), Expect = 0.0
Identities = 1020/1065 (96%), Gaps = 13/1065 (1%)
Strand=Plus/Plus
Query 1696 ACCGGAACACAAAGCTCCAGCTCCTCCACCGCCGCCTCCTATGTCAAAAGCATCTGAAAG 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 ACCGGAACACAAAGCTCCAGCTCCTCCACCGCCGCCTCCTATGTCAAAAGCATCTGAAAG 938
Query 1756 TGGAGAGTTTTGTCAATTTTCGAAAAC-GCATTCTACAAATGGAGACAATGCTCCGTCGA 1814
|||||||||||||||| | || |||| ||| ||||||||||||||||||||||| ||||
Sbjct 939 TGGAGAGTTTTGTCAA-TGTCCTAAACTGCAATCTACAAATGGAGACAATGCTCCTTCGA 997
Query 1815 TGCCGGCACCTCCAGCACCACCGGGTAGCGGAAGATCCTTAAAGAAAGCAACTAGCAAAT 1874
||||||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 998 TGCCGGCCCCTCCTGCGCCACCGGGAAGCGGAAGATCATTAAAGAAAGCAACTAGCAAAT 1057
Query 1875 TAAGAAGATCAGCACAAATCGCAAATCTCTATTGGGCTCTCAAAGGGAAGCTTGAAGGCC 1934
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1058 TAAGAAGATCAGCACAAATCGCAAATCTCTATTGGGTTCTCAAAGGGAAGCTTGAAGGCC 1117
Query 1935 GTGGCGTAGAAGGGAAAACaaaaaaaGCAAGTAAAGGGCAAAATAGTGTTGCAGAGAAAT 1994
||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||
Sbjct 1118 GTGGCGTAGAAGGGAAAACAACAAAAGCAAGTAAAGGGAAAAAGAATGTTGCAGAGAAAT 1177
Query 1995 CTCCTGTTAAAGTTGCAAGATCAGGAATGGCTGATGCACTTGCAGAGATGACAAAGAGGT 2054
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CTCCTGTTAAAGGTGCAAGATCAGGAATGGCTGATGCACTTGCAGAGATGACAAAGAGGT 1237
Query 2055 CAAGTTATTTCCAGCAAATCGAAGAAGATGTTCAGAAATACGCTAAATCGATCGAAGAAC 2114
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1238 CGAGTTATTTCCAGCAAATCGAAGAAGATGTTCAGAAATACGCTAAATCAATCGAAGAAT 1297
Query 2115 TGAAATCCT-CAATACATAGTTTCCAGACAAAAGACATGAAAGAGTTGCTTGAATTTCAT 2173
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TGAAAT-CTACAATACATAGTTTCCAGACAAAAGACATGAAAGAGTTGCTTGAATTTCAT 1356
Query 2174 AGCAAAGTAGAATCTATTCTTGAGAAACTAACTGATGAAACTCAAGTTCTCGCGAGGTTT 2233
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 AGCAAAGTGGAATCTATTCTTGAGAAACTAACTGATGAAACTCAAGTTCTCGCGAGGTTT 1416
Query 2234 GAAGGTTTCCCTGAGAAGAAACTAGAAGTAATAAGAACAGCTGGTGCCTTGTACAAGAAG 2293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GAAGGTTTCCCTGAGAAGAAACTAGAAGTAATAAGAACAGCTGGTGCCTTGTACAAGAAG 1476
Query 2294 TTAGATGGGATTCTAGTTGAGCTCAAGAACTGGAAAATTGAGCCTCCATTAAACGATCTT 2353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TTAGATGGGATTCTAGTTGAGCTCAAGAACTGGAAAATTGAGCCTCCATTAAACGATCTT 1536
Query 2354 CTCGACAAGATAGAGCGTTACTTCAACAAATTTAAAGGCGAGATTGAAACGGTTGAGCGA 2413
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1537 CTCGATAAGATAGAGCGTTACTTCAACAAATTTAAAGGAGAGATTGAAACGGTTGAGCGA 1596
Query 2414 ACAAAAGACGAAGACGCTAAAATGTTTAAGAGATACAACATTAACATTGATTTCGAAGTT 2473
||||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||
Sbjct 1597 ACAAAAGACGAAGACGCTAAAATGTTTCAGAGGCACAACATTAACATCGATTTCCAAGTT 1656
Query 2474 CTTGTTCAAGTCAAAGAAACTATGGTTGATGTTTCATCAAATTGCATGGAGTTAGCACTA 2533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 CTTGTTCAAGTCAAAGAAACTATGGTTGATGTTTCATCAAATTGCATGGAGTTAGCACTA 1716
Query 2534 aaggagaggagagaagcgaacgaggaagcgaagaacggtgaagaaagcaagatga--a-- 2589
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1717 AAGGAGAGGAGAGAAGCGAACGAGGAAGCGAAGAACAGTGAAGAAAGCAAGATGAGTAAT 1776
Query 2590 --g--g-aagagagagctaagagGCTATGGAGGGCTTTTCAGTTTGCTTTCAAAGTTTAT 2644
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATGAAGGAAGAGAGAGCTAAGAGGCTATGGAGGGCTTTTCAGTTTGCTTTCAAAGTTTAT 1836
Query 2645 ACATTTGCAGGAGGTCACGATGAACGAGCAGATTGTTTAACGAGACAACTTGCACATGAG 2704
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1837 ACATTTGCAGGAGGTCACGACGAACGAGCAGATTGTTTAACAAGACAACTTGCACATGAG 1896
Query 2705 ATTCAAACAGATCCTGATCAATCCGAATCATCGATCATGTCTTGA 2749
||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1897 ATTCAAACAGAACCTGATCAAACCGAATCATCGATCATGTCTTGA 1941
Score = 1210 bits (655), Expect = 0.0
Identities = 764/815 (94%), Gaps = 14/815 (2%)
Strand=Plus/Plus
Query 575 ATGAAGGATCTACAAAAGCTATCTCCTGAGATTGTAACCATTAATCAATCTTTTGAAATG 634
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGATCTACAAAAGCTTTCTCCTGAGATTGTAACCATTAATCAATCTTTTGAAATG 60
Query 635 GAAGGAGCTGACATGGATAAGATGTTAATTTTCTTCTACGAAGATCTCAGAGCTATTGGG 694
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GAAGGAGCTGACATGGATAAGATGTTAATATTCTTCTACGAAGATCTCAGAGCTATTGGG 120
Query 695 GATTCTTGGATTATGGATAGTGACTGGATTTATCGATCTAAGTACAAAAACAGTGGAGTT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCTTGGATTATGGATAGTGACTGGATTTATCGATCTAAGTACAAAAACAGTGGAGTT 180
Query 755 GGGAAGAATAAATCAGATCGTCTAGTGGAGCATGTATTAGCAGCTCTTGATGGACTAATC 814
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGAAGAATAAGTCAGATCGTCTAGTGGAGCATGTATTAGCAGCTCTTGATGGACTAATC 240
Query 815 AAAACGACGAGAGAAAGATTTGGTATGATGGATCTTGAATCTGAAGGAAGAAAGAGTTTT 874
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGACAACAAGAGAAAGATTTGGTATGATGGATCTTGAATCTGAAGGAAGAAAGAGTTTT 300
Query 875 ACAACACCAAAAGGTGTTTCATCAGAAGCAAGAAGAAGCTTTACAAGATCTGCTTCTTAT 934
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACA-C-C-AAAAGGTGTTTCATCAGAAGCAAGAAGAAGCTTTACAAGATCTGCTTCTTAT 357
Query 935 TCAGAAAGTAACAACTCTTTTTATCCATCTCCATTAACACCGAGATCAGTACTTCCAGGG 994
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 TCAGAAAGTAACAATTCTTTTTATCCATCTCCATTAACACCAAGATCAGTACTTCCAGGG 417
Query 995 ACAATGATGA-TGTCTAGTAACTCTACATCTCCAAGTCTATGGAACTTAAGAGCTCAAGC 1053
|||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 ACAATGCT-ACTGTCTAGTAACTCAACATCTCCAAGTCTATGGAACTTAAGAGCTCAAGC 476
Query 1054 TTTGGATAGGTTAAGTCCTGTTGATTTGAAGCGGTTTGCTATGCAGATCTTGTCACAGAG 1113
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 477 TTTGGATAGGTTAAGCCCTGTTGATTTAAAGCGGTTTGCTATGCAGATCTTGTCACAAAG 536
Query 1114 AGATTCAGAGAGTGTTAGTGAAACAAAGATTGGTATCgaagaagaaaatgaagagagtga 1173
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 537 AGATTCAGAGAGTGTTAATGAAACAAAGATTGGTATCGAAGAAGAAAACGAAGAGAGTGA 596
Query 1174 gatattagcagaagaaaaagaagaagaagaTAATGATTTCTCTGTTTTAGAAACAGAGGG 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GATATTAGCAGAAGAAAAAGAAGAAGAAGATAATGATTTCTCTGTTTTAGAAACAGAGC- 655
Query 1234 AACAGAGC-AAGAGAT-TAAAACAGAACATCATAGGGAAAGTTCTGGAACAGAGCATGAG 1291
| || || ||| | | | |||||| ||| | | ||| |||||| |||||||||||||
Sbjct 656 ATCATAGGGAAG-GTTCTGGAACAGAGCATGAAATCGAAGGTTCTGAAACAGAGCATGAG 714
Query 1292 ACTGAAGCAAAGGATCA-TAGCGAAGGTTTTGAAACAGAGCATCATCGTATTGAATGTTT 1350
| ||||||||||||| | ||||||||||| |||||||||||||||| |||||| ||||
Sbjct 715 ATTGAAGCAAAGGAT-AGTAGCGAAGGTTGTGAAACAGAGCATCAT---ATTGAAGGTTT 770
Query 1351 CGAAACTGAGCATGAGATTGATGCAGATGATCATA 1385
|||||| |||||||||||||| |||| |||||||
Sbjct 771 CGAAACAGAGCATGAGATTGAAACAGAGGATCATA 805
Score = 156 bits (84), Expect = 1e-36
Identities = 135/158 (85%), Gaps = 10/158 (6%)
Strand=Plus/Plus
Query 1380 ATCATATCGAAGATTTTGAAACAGAGCATCATCATATTGAAGGTT-TAGAAACAGAGCAT 1438
|||||| |||| || || |||||||||| | | || ||||||| | ||||||||||||
Sbjct 656 ATCATAGGGAAGGTTCTGGAACAGAGCATGA--A-ATCGAAGGTTCT-GAAACAGAGCAT 711
Query 1439 GAGATTGATGCAAATGATCA-TATCGAAGATTTTGAAACAGAGCATCATCATATTGAAGG 1497
|||||||| ||||| ||| | || ||||| || |||||||||| ||||||||||||||
Sbjct 712 GAGATTGAAGCAAAGGAT-AGTAGCGAAGGTTGTGAAACAGAG---CATCATATTGAAGG 767
Query 1498 TTTCGAAACAGAGCATGAGAATGAAACAGAGGATCATA 1535
|||||||||||||||||||| |||||||||||||||||
Sbjct 768 TTTCGAAACAGAGCATGAGATTGAAACAGAGGATCATA 805
> Ahg895572 jgi|Araly1|895572|Al_scaffold_0006_3568
Length=453
Score = 654 bits (354), Expect = 0.0
Identities = 425/458 (93%), Gaps = 10/458 (2%)
Strand=Plus/Plus
Query 107 ATGTCAAGCGGGAGGCTTTGCGGCTTCACGCCGATAACCTTCTGTCGCAAAATCTCAAGA 166
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCAAGCGGGAGGCTTTGCGGCTTCACGCCGATAACCTTCTGTCGCAAGATCTCAAGA 60
Query 167 TTGCAGGTCGCAAGAGGGCTTGCTCTAAAAAGGCTTATCAAAGGAAAACACGATTTTAGA 226
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 61 TTGCAGGTCGCAAGAGGACTTGCTCTAAAAAGGCTTATCAAGGGAAAACACGAATTTAGA 120
Query 227 CGCACAACAACATCAAAGAA---CAATGTCGaaaaaaagaaaaaTAAAGAGATCAGACGC 283
||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 121 CGCGCATCAACATCAAAGAAGAACAATGTCGAAAAAAAGAAAAATAAAGAGATCAAACGC 180
Query 284 ACAGTTTCACAGATCTCTTCTTCTGTTGCACAAGCTTCTTCTCCAAAGAGTTTCAATTCT 343
||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 181 ACAGTTTCACAAATCTCTTCTTCTGTTGCACAAGCTTCT-C-C-AAAGAGTTTCAATTCT 237
Query 344 ACAAAACATGTTTCTACTCCCACC-GCGACCGCGTCTCCTTTGTCAGTAAAGAACTC-AA 401
||||||||||||||||||||| | || |||||||||||||||||||||||||| | ||
Sbjct 238 ACAAAACATGTTTCTACTCCC-CGTGCTACCGCGTCTCCTTTGTCAGTAAAGAA-TGGAA 295
Query 402 AGACGAAAGCGAATACACCTAGAAAGAACACTTTGGAGGGTTCTTCGCCGAAATGCTCAG 461
||| |||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 296 AGAAGAAAGCCAATACACCGAAAAAGAACACTTTGGAGGGTTCTTCGCCGAAATGTTCAG 355
Query 462 CAAATTTCATTTTGATGGTTGAGTTAAGGAAAAACATATTCGCTTTTAGAGATATGATTG 521
||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct 356 CAAATTTCATTTTGATGGTGGAATTAAGGAAGAACATCTTTGCTTTTAGAGATATGATTG 415
Query 522 ATTTACCTTCTCTTGATGGTTCTCTATCTGTCACCGAG 559
||||||||||||||||||| ||| ||||||||||||||
Sbjct 416 ATTTACCTTCTCTTGATGGCTCTTTATCTGTCACCGAG 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103719737135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5