BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G04990.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490144 jgi|Araly1|490144|fgenesh2_kg.6__3278__AT4G04990.1 1177 0.0
> Ahg490144 jgi|Araly1|490144|fgenesh2_kg.6__3278__AT4G04990.1
Length=945
Score = 1177 bits (637), Expect = 0.0
Identities = 851/948 (90%), Gaps = 39/948 (4%)
Strand=Plus/Plus
Query 1 ATGTTAACCTCAAGGACATGGATCATCTCTTCAGGCTTAGTCGGAGCCATATCACTGATG 60
|||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCAAACTCGAGGACATGGATCATCTCTTCAGGATTAGTCGGAGCCATATCACTGATG 60
Query 61 CTTCGATCGGTTTTTAACTTCTCCTTCACCGGAGCTCGCTTCCTTCTCCCTACTAATTTA 120
|| |||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTCCGATCGGTATTGAACTTCTCCTTCACCGGAGCTCGCTTCTTTCTCCCTACTAATTTA 120
Query 121 CACCCTATTTTCATCATCAACGGCATCATCTTTGCCCTCGCAGCCTCTACTTCACTCTTC 180
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 121 CACCCTATTTTCATCATCAGCGGCATCATCTTTGCCCTCGCAGCCTCCAGTTCACTCTTC 180
Query 181 GGAAACGGACCAGACTCTCCGGCCACAAACCATCACCATGATGATGATACGTATGATTAC 240
|| |||||| | ||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct 181 GGCAACGGATCTGACTCTCCGGCCACAAATTATCACCATGATGATGATACCTATCATTAT 240
Query 241 GAACAGGA-C--CATCAT---CACGACCATGA------TCGT------GA---C---CGT 276
||||| || | |||||| || |||||||| |||| || | |||
Sbjct 241 GAACAAGATCATCATCATGACCAGGACCATGATCGTGGTCGTGACCAAGACCGCGAACGT 300
Query 277 TCTTCTAATAACTCATCC-ACTTCTTCGTTTGATCAAAACAATAATAAGGTTCACGAGAA 335
| |||||| ||||||||| || || |||||||||||| ||||||||||||||||||||||
Sbjct 301 TATTCTAACAACTCATCCAAC-TCCTCGTTTGATCAATACAATAATAAGGTTCACGAGAA 359
Query 336 AGAAAA-TTTTC--CAGTGAG---ATCAGAGAGTGGAGGATCTTATGGGGTTTCTTCTCC 389
|||||| ||||| | ||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 360 AGAAAAGTTTTCGGCCGTGAGATCATCAGAGAGGGGAGGATCTTATGGAGTTTCTTCTCC 419
Query 390 GGAGGTTCGtttt-tttCCAACGGCGCCGGAGAAGCCCGTCGGTCTCCGACGTCCACCTA 448
|||| |||||||| ||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 420 GGAGATTCGTTTTCCGTCC-ACGGCGCCGGAGAAACCCGTCGGTCTTCGACGTCCACCTA 478
Query 449 CTGTTCCTGTAAAGACTTTTCCACAAGACAATACATCGGGGGACGAGAGCGAGACCATGG 508
||| ||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||
Sbjct 479 CTGCTCCTGTAAAGACTTTTCGACAAGACAACACATCGGGTGACGATAGCGAGACCATGG 538
Query 509 AGGAGATGTGGGAGAGAGTCAAAGCCGAAAAGCAACCAAAGAAA-C--CTAACTCGTTGC 565
||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 539 AGGAGATGTGGGAGAGAGTCAAAGCCGAAAAACAACCAAAGAAACCTGCTAACTCGTTGC 598
Query 566 AAGACCACGTCATATCCAGGGGAGACACAAAAATGTCAACATCTTCATGGCCGTTGCCGT 625
|| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 AAAACCACGTCATCTCCAGGGGAGACACAAAAATGTCCACATCTTCATGGCCGTTGCCGT 658
Query 626 CACGT-TCACCGTCACGAGCGAGGAGGCCTACTCCTTCGTTGTCTTCGCTATCACCGTCA 684
| | | |||||||| ||| |||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 659 CGC-TGTCACCGTCGCGAACGAGGAGGCCTACTCCCTCGCTGTCTTCGCTATCGCCGTCA 717
Query 685 TCGTCGCGAGCAAGGAGGCCTCCTTCATCTCCCGCGCGGCCGGGAAAGAAGTTGATGGAG 744
||||||||||| |||| ||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 718 TCGTCGCGAGCGAGGAAGCCTCCTTCGTCTCCGGCGCGGCCGGGAAAGAAATTGATGGAG 777
Query 745 AGGATTCCGTCGTGGGTGAAGTTGAAAAAAGAGTTATCAATGGGAAGAGAGGAGCTCAAT 804
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGAATTCCGTCGTGGGTGAAGTTGAAAAAAGAGTTATCAATGGGAAGAGAGGAGCTCAAT 837
Query 805 TCACGAGTGGAAGCCTTCATTACAAAATTCAAGGATGAGATGAAGTTGCAAAGGTTGGAG 864
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 838 TCACGAGTGGAAGCTTTCATTACAAAATTCAAGGATGAGATGAAATTGCAGAGGTTGGAG 897
Query 865 TCTGTAAGACGTTACAAGTCTTTCCGTGGTCACAACGATGAAAAGTAA 912
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 TCTGTAAGACGTTACAAGTCTTTCCGTGGTGACAACGATGAAAAGTAA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5