BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G05000.1 Length=1114 Score E Sequences producing significant alignments: (Bits) Value Ahg490145 jgi|Araly1|490145|fgenesh2_kg.6__3279__AT4G05000.1 1153 0.0 Ahg929052 jgi|Araly1|929052|scaffold_301509.1 117 2e-25 > Ahg490145 jgi|Araly1|490145|fgenesh2_kg.6__3279__AT4G05000.1 Length=861 Score = 1153 bits (624), Expect = 0.0 Identities = 814/898 (91%), Gaps = 43/898 (5%) Strand=Plus/Plus Query 223 TGTTTTTGTTCATCGTTTTCATACGCAATCA-TCTCT-TGACAGACCTTCGTAAAGGAAG 280 |||| ||||||||||||||| |||||||||| | ||| | ||||||||||||||||||| Sbjct 1 TGTTGTTGTTCATCGTTTTCTTACGCAATCATTTTCTAT-TCAGACCTTCGTAAAGGAAG 59 Query 281 -AGCTTGTGCGTGTACCGTTCTCTTCTCCGTAGATTGACTTGCTCTAATGATGGAGGTCA 339 | ||||| |||||||| ||||||||||| ||||||||||| ||| ||||||||||||| Sbjct 60 CA-CTTGTCCGTGTACCATTCTCTTCTCCATAGATTGACTT--TCTTATGATGGAGGTCA 116 Query 340 AATTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTTGCAGAGCTTTTTGCAA 399 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 AATTATGGAATGACAAGCGCGAAAGAGAGATGTATGAGAATTTTGCAGAGCTTTTTGCAA 176 Query 400 TCATCAAAGCCACAGAGAAGCTAGAGAAAGCTTATATAAGAGACCTAATCAATCCTTCA- 458 |||| ||| ||||||||||||| |||||||||||||| |||||| |||||||||| | | Sbjct 177 TCATTAAATCCACAGAGAAGCTCGAGAAAGCTTATATCAGAGACTTAATCAATCC-TAAG 235 Query 459 GAGTACGAATCTGAATGCCAGAAACTCATTGTCCACTTCAAAACTTTATCCGCTACACTC 518 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 236 GAGTACGAATCTGAATGCCAGAAACTCATTGTCCACTTCAAAACACTATCCGCTACACTC 295 Query 519 AAAGACACGGTGCCAAACATTGAAAGATTTGCAGACACATACAAAATGGACTGTCCAGCT 578 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 296 AAAGACACGGTACCAAACATCGAAAGATTTGCAGACACATACAAAATGGACTGTCCAGCT 355 Query 579 GCTCTATACCGCCTGGTGACATCAGGTCTTCCTGCCACAGTGGAACACCGAGCTACCGT- 637 ||||||||| | || |||||||| ||| |||| ||||||||||||||||||||||| || Sbjct 356 GCTCTATACAGACTTGTGACATCTGGTGTTCCCGCCACAGTGGAACACCGAGCTACTGTA 415 Query 638 TGCAGCATCTACGTCGAACTCTGCATCCATTGTTGCTGAATGTGTACAGAATTTCATCAC 697 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 T-CAGCATCTACGTCGAACTCTGCATCCATTGTTGCTGAATGTGTACAGAATTTCATCAC 474 Query 698 TTCAATGGATTCTTTGAAACTAAACATGGTGGCTGTCGATCAGGTTTATCCTCTCTTGTC 757 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 ATCGATGGATTCTTTGAAACTAAACATGGTGGCTGTCGATCAGGTTTATCCTCTCTTGTC 534 Query 758 TGATCTATCTGCTTCTCTCAACAAACTGAGTATTCTACCGCCCGATTTCGAAGGGAAGAC 817 ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||| Sbjct 535 TGATCTATCGGCTTCTCTCAACAAACTGAGTATTTTACCGCCGGACTTCGAAGGGAAGAC 594 Query 818 GAAGATGAAAGAATGGCTTTCGAGGTTGTCTAAGATGGGAGCAGCCGATGAGCTTACGGA 877 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 595 GAAGATGAAAGAATGGCTTTCGAGATTGTCTAAGATGGGAGCAGCTGATGAGCTTACGGA 654 Query 878 ACAACAGTCAAGGCAACTTCACTTTGATCTCGAGTCATCATACAACTCTTTCATGGCAGC 937 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 655 ACAACAGTCAAGGCAACTTCACTTTGATCTGGAGTCATCATACAACTCTTTCATGGCAGC 714 Query 938 TTTGCCTAAAGCTGGTAATTAAGATCAATGTAGGTTACGTTTCTTGTTTTTGTTTTTGTG 997 |||||||||||||||||||||| ||||| | | || | | |||| || Sbjct 715 TTTGCCTAAAGCTGGTAATTAAAATCAA--T--G-TA-G------G--TTTG-----GT- 754 Query 998 TAAAAGTCTTTGGTTTAGTCTGGTTTAGTGGTAATTCC-AAGAGAATTTTACACGTTTGA 1056 | || || ||||| || ||||||||||| ||| |||| |||||| ||||||||| Sbjct 755 T-----TC-TT-GTTTA---TGTTTTAGTGGTAA-TCCAAAGACAATTTTGCACGTTTGA 803 Query 1057 GGAGTTGAATGTGCTTATGTGTACCATATTTTGGTTATATGAAAGTTTTATCTAAACC 1114 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 804 GGAGTTGAATGTGCTTGTGTGTACCATATTTTGGTTATATGAAAGTTTTATCTAAACC 861 > Ahg929052 jgi|Araly1|929052|scaffold_301509.1 Length=291 Score = 117 bits (63), Expect = 2e-25 Identities = 84/94 (89%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 329 GATGGAGGTCAAATTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTTGCAGA 388 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 20 GATGGAGGTCAAGTTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTCGTAGA 79 Query 389 GCTTTTTGC-AATCATCAAAGCCACAGAGAAGCT 421 ||| | || || ||||||||| || |||||||| Sbjct 80 GCTATACGCTAA-CATCAAAGCTACTGAGAAGCT 112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41515856613 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5