BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05000.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490145 jgi|Araly1|490145|fgenesh2_kg.6__3279__AT4G05000.1 1153 0.0
Ahg929052 jgi|Araly1|929052|scaffold_301509.1 117 2e-25
> Ahg490145 jgi|Araly1|490145|fgenesh2_kg.6__3279__AT4G05000.1
Length=861
Score = 1153 bits (624), Expect = 0.0
Identities = 814/898 (91%), Gaps = 43/898 (5%)
Strand=Plus/Plus
Query 223 TGTTTTTGTTCATCGTTTTCATACGCAATCA-TCTCT-TGACAGACCTTCGTAAAGGAAG 280
|||| ||||||||||||||| |||||||||| | ||| | |||||||||||||||||||
Sbjct 1 TGTTGTTGTTCATCGTTTTCTTACGCAATCATTTTCTAT-TCAGACCTTCGTAAAGGAAG 59
Query 281 -AGCTTGTGCGTGTACCGTTCTCTTCTCCGTAGATTGACTTGCTCTAATGATGGAGGTCA 339
| ||||| |||||||| ||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 60 CA-CTTGTCCGTGTACCATTCTCTTCTCCATAGATTGACTT--TCTTATGATGGAGGTCA 116
Query 340 AATTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTTGCAGAGCTTTTTGCAA 399
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AATTATGGAATGACAAGCGCGAAAGAGAGATGTATGAGAATTTTGCAGAGCTTTTTGCAA 176
Query 400 TCATCAAAGCCACAGAGAAGCTAGAGAAAGCTTATATAAGAGACCTAATCAATCCTTCA- 458
|||| ||| ||||||||||||| |||||||||||||| |||||| |||||||||| | |
Sbjct 177 TCATTAAATCCACAGAGAAGCTCGAGAAAGCTTATATCAGAGACTTAATCAATCC-TAAG 235
Query 459 GAGTACGAATCTGAATGCCAGAAACTCATTGTCCACTTCAAAACTTTATCCGCTACACTC 518
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 236 GAGTACGAATCTGAATGCCAGAAACTCATTGTCCACTTCAAAACACTATCCGCTACACTC 295
Query 519 AAAGACACGGTGCCAAACATTGAAAGATTTGCAGACACATACAAAATGGACTGTCCAGCT 578
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 296 AAAGACACGGTACCAAACATCGAAAGATTTGCAGACACATACAAAATGGACTGTCCAGCT 355
Query 579 GCTCTATACCGCCTGGTGACATCAGGTCTTCCTGCCACAGTGGAACACCGAGCTACCGT- 637
||||||||| | || |||||||| ||| |||| ||||||||||||||||||||||| ||
Sbjct 356 GCTCTATACAGACTTGTGACATCTGGTGTTCCCGCCACAGTGGAACACCGAGCTACTGTA 415
Query 638 TGCAGCATCTACGTCGAACTCTGCATCCATTGTTGCTGAATGTGTACAGAATTTCATCAC 697
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 T-CAGCATCTACGTCGAACTCTGCATCCATTGTTGCTGAATGTGTACAGAATTTCATCAC 474
Query 698 TTCAATGGATTCTTTGAAACTAAACATGGTGGCTGTCGATCAGGTTTATCCTCTCTTGTC 757
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATCGATGGATTCTTTGAAACTAAACATGGTGGCTGTCGATCAGGTTTATCCTCTCTTGTC 534
Query 758 TGATCTATCTGCTTCTCTCAACAAACTGAGTATTCTACCGCCCGATTTCGAAGGGAAGAC 817
||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 535 TGATCTATCGGCTTCTCTCAACAAACTGAGTATTTTACCGCCGGACTTCGAAGGGAAGAC 594
Query 818 GAAGATGAAAGAATGGCTTTCGAGGTTGTCTAAGATGGGAGCAGCCGATGAGCTTACGGA 877
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 595 GAAGATGAAAGAATGGCTTTCGAGATTGTCTAAGATGGGAGCAGCTGATGAGCTTACGGA 654
Query 878 ACAACAGTCAAGGCAACTTCACTTTGATCTCGAGTCATCATACAACTCTTTCATGGCAGC 937
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 655 ACAACAGTCAAGGCAACTTCACTTTGATCTGGAGTCATCATACAACTCTTTCATGGCAGC 714
Query 938 TTTGCCTAAAGCTGGTAATTAAGATCAATGTAGGTTACGTTTCTTGTTTTTGTTTTTGTG 997
|||||||||||||||||||||| ||||| | | || | | |||| ||
Sbjct 715 TTTGCCTAAAGCTGGTAATTAAAATCAA--T--G-TA-G------G--TTTG-----GT- 754
Query 998 TAAAAGTCTTTGGTTTAGTCTGGTTTAGTGGTAATTCC-AAGAGAATTTTACACGTTTGA 1056
| || || ||||| || ||||||||||| ||| |||| |||||| |||||||||
Sbjct 755 T-----TC-TT-GTTTA---TGTTTTAGTGGTAA-TCCAAAGACAATTTTGCACGTTTGA 803
Query 1057 GGAGTTGAATGTGCTTATGTGTACCATATTTTGGTTATATGAAAGTTTTATCTAAACC 1114
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GGAGTTGAATGTGCTTGTGTGTACCATATTTTGGTTATATGAAAGTTTTATCTAAACC 861
> Ahg929052 jgi|Araly1|929052|scaffold_301509.1
Length=291
Score = 117 bits (63), Expect = 2e-25
Identities = 84/94 (89%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 329 GATGGAGGTCAAATTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTTGCAGA 388
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 20 GATGGAGGTCAAGTTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTCGTAGA 79
Query 389 GCTTTTTGC-AATCATCAAAGCCACAGAGAAGCT 421
||| | || || ||||||||| || ||||||||
Sbjct 80 GCTATACGCTAA-CATCAAAGCTACTGAGAAGCT 112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5