BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G05010.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943280 jgi|Araly1|943280|scaffold_603824.1                        568    2e-161


> Ahg943280 jgi|Araly1|943280|scaffold_603824.1
Length=533

 Score =  568 bits (307),  Expect = 2e-161
 Identities = 438/499 (88%), Gaps = 17/499 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGTATTTGAGTGATGGATTTGAAATGAAGTCGACTCGTGAGTATGAGAGATTAGGG  60
            ||||||| |||||||| ||||||||| || |||||||  ||||||| |||| |||||| |
Sbjct  21   ATGGCGTTTTTGAGTGGTGGATTTGATATTAAGTCGAAACGTGAGTGTGAGGGATTAGTG  80

Query  61   TTAGGGTTTGTGAGGTTTACTAGAGGATTAGGGAGGAAAAGGATTCTCATATCTAAA-CG  119
            ||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||| | 
Sbjct  81   TTAGGGTTTGTTAGGTTTACTAGAGGATTAGGAAGGAAAAGAATTCTCATTTCTAAATCT  140

Query  120  AGCTCCGGAAA--ATGATTCGCCGCCGGTGAAGAGACCAAGTCATGAAACGACGGAATCT  177
            |  | |  |||   ||| |||  | |  |   | |  ||| | ||    || ||||| ||
Sbjct  141  A-ATTC--AAATTCTGA-TCG-AG-C--T-CCG-G--CAAATGATTCGTCGCCGGAAGCT  188

Query  178  TGTAGGTCTCTGCTTGAAACTCTGCATCAAGATATTTTGATTCGAGTACTTTGTCATGTG  237
              || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  189  AATAAGTCTCTGCTTGAAACTCTGCATCAAGATATTTTGATTCGAGTACTTTGTCATGTG  248

Query  238  GATCACGAGGACCTAGCCACACTAAAACGTGTATCTAAAACAATAAGAAAAGCTGTAATT  297
            ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||
Sbjct  249  GATCACGAGGACCTAGTGACGCTAAAACGTGTATCTAAAACAATAAGAAAAGCTGTAATT  308

Query  298  GAAGCAAAGAAGTCGCATTTTGATTATAGCACACCTAAAAAGAGATTGCCATTTCGAGAC  357
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  309  GAAGCAAAGAAGTCGCATTTTGATTATAGCACACCTAAAAAGAGATTGCCTTTTCGAGAC  368

Query  358  GCAATACTAATCCTTGATTCAA-ATTCGAATTCCAGTAGTCAAGATGATGAAATGGAGCC  416
            ||||||||| |||||||   || ||||| |||| |||| |||||||||||||||||||||
Sbjct  369  GCAATACTAGTCCTTGAGG-AAGATTCGGATTCGAGTAATCAAGATGATGAAATGGAGCC  427

Query  417  TCCTAATGCACCAATTCGAAGGAGGTTTATTAATCGAGAATCGGATTTGTCGAAGATCTC  476
            ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct  428  TCCTAATGCACCAATTCGAAGGAGGATTATTAGTCGTGAATCGGATTTGTCGAAGATCTC  487

Query  477  TATGGTATTGTTTAAATGA  495
            |||||||||||||||||||
Sbjct  488  TATGGTATTGTTTAAATGA  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5