BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05018.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943282 jgi|Araly1|943282|scaffold_603826.1 483 1e-135
> Ahg943282 jgi|Araly1|943282|scaffold_603826.1
Length=649
Score = 483 bits (261), Expect = 1e-135
Identities = 527/644 (82%), Gaps = 64/644 (10%)
Strand=Plus/Plus
Query 1 ATGGAGGAAACTGGTAAAATCCCATGGACGATCTTC---TTCTCTCATCCTCTGTTCTCT 57
|||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 21 ATGGAGGAAATTGGAAAAATCCCATGGACGATCTTCTTATTCTCTCATCCTATGTTCTCT 80
Query 58 TGTTTCATTTCACTCTACACTATATTTCTTCTTTATTTCCCTCAAGATTCTCTTCGAATT 117
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 81 TGTTTCATTTCACTCTATACTATATTTCTACTTTATTTCCCTCAAGATTCTCTTCGGATT 140
Query 118 CTTATTTC-CCATGTCCCTCTCCTCATCGGAGCTTTCTTAATCTCCTGCCTCCATC-TCG 175
|||||||| || ||| ||||||||| |||||||||||||| |||||| | ||| | |||
Sbjct 141 CTTATTTCTCC-TGTTCCTCTCCTCGTCGGAGCTTTCTTAGTCTCCTACTTCC-GCTTCG 198
Query 176 GGTCGACCCGGA-AATCCATTGCCCGACCCGGAAGCAATGAGGATTCGATAGGACCTGAA 234
||| ||||| || |||||||||| |||||||||| |||||| ||||||||||||| |||
Sbjct 199 GGTTGACCC-GAGAATCCATTGCGCGACCCGGAAATAATGAGAATTCGATAGGACCCGAA 257
Query 235 CTCAAAACGGGTCTCGGTTTAAACCCGGATTTTAT--G-GA---A-T-G---GAACTTT- 282
|||||||| |||||||||| ||| |||||||| || | || | | | ||| |||
Sbjct 258 CTCAAAACTGGTCTCGGTTCAAATCCGGATTTCATGGGTGATTTAGTGGAAAGAAATTTG 317
Query 283 AAATTGGGAGCTCCATTGGAAGTTATTCACAAAGAAGAAGAAGAACAGTCGATGACGGGT 342
|||||| |||||||||||||||||| | || | ||||||||||||||| | |
Sbjct 318 AAATTGAGAGCTCCATTGGAAGTTA-T-AC-ACGAAGAAGAAGAACAG-C-----C---- 364
Query 343 GTAAAAGATCCGACCCGGTTCGTGATGATCAAGAGGTTTCCATCGTTATCGATGTTTAAC 402
||| |||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct 365 ------GAT--GACCCGGTTCGTAATGATCGAGAGGTTACCATCTTTATCGATGTTTAAC 416
Query 403 CCGGAATCTGATTCCGAATTGGACCGCGATTTCCCGGTTATGAGTGAAAATGATCCAACC 462
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 CCAGAATCTGATTCCGAATTGGACCGCTATTTCCCGGTTATGAGTGAAAATGATCCAACC 476
Query 463 CGGTTCGTGAGGCTGGAAAGGT--C-A---------ATTAAACCGGAATCTGATATGGAT 510
|||||||||||| | ||||||| | | ||||||||||||| | || ||| |
Sbjct 477 CGGTTCGTGAGGATCGAAAGGTTACCATCGTTGTCGATTAAACCGGAATTTTATTTGGTT 536
Query 511 TACGACTCCGAATTGGACAACAATTT---GGTTATTGATGTAAAAGATC-GAACTCGGTT 566
| || ||||||||||| ||| |||| |||||| |||||||| |||| || | |||||
Sbjct 537 TTCGGGTCCGAATTGGATAACTATTTCCCGGTTATGGATGTAAA-GATCCGATC-CGGTT 594
Query 567 C-GTGAAGG-TGGAGATATTCCCATCGTTGTCAATCTTTAAACC 608
| || || | |||| |||||| | ||| || || |||||||
Sbjct 595 TAG-GA-GGATCGAGAGATTCCCTTTGTTATCGATAATTAAACC 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5