BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05020.2
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943283 jgi|Araly1|943283|scaffold_603827.1 2579 0.0
Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1 1441 0.0
Ahg480917 jgi|Araly1|480917|fgenesh2_kg.3__3618__AT2G20800.1 141 2e-32
> Ahg943283 jgi|Araly1|943283|scaffold_603827.1
Length=1793
Score = 2579 bits (1396), Expect = 0.0
Identities = 1511/1567 (96%), Gaps = 6/1567 (0%)
Strand=Plus/Plus
Query 110 TTGAATCGAACCAAGAGCGAAAATGAGAAATTTCAGTGTCTTCGAGAGATTCTCTAAAGC 169
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TTGAATCGAACC-AGAGCGAAAATGAGAAATTTCAGTATCTTCGAGAGATTCTCTAAAGC 59
Query 170 TTTTAAAGATCATCCTTCTCTCACCAGGATTCTCGTCGTCTCCACGATCAGTGGTGGTGG 229
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTTCAAGATCATCCTTCTCTCACCAGGATTCTCGTCGTCTCCACGATCAGTGGTGGTGG 119
Query 230 ACTTATAGCGTATTCTGAGGCAAACGCATCTTATGGAGCAAATGGTGGTGCTGTTGTTGA 289
||||||||| |||||||||||||||||||| |||||||| || |||| || | |||||||
Sbjct 120 ACTTATAGCTTATTCTGAGGCAAACGCATCCTATGGAGCGAACGGTGCTGGTATTGTTGA 179
Query 290 AACTGGAACCAAGAAGAAGAAGGTGGTGCTGCTCGGAACTGGATGGGCTGGAACTAGTTT 349
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 AACTGGAACCAAGAAGAAGAAGGTGGTGTTGCTCGGAACTGGATGGGCTGGAACTAGTTT 239
Query 350 CTTGAAGAATTTGAACAATTCTCAATATGAGGTTCAGATTATATCGCCTCGGAACTACTT 409
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 240 CTTGAAGAATTTGAATAATTCTCAATATGAGGTTCAGATTATATCACCTCGAAACTACTT 299
Query 410 TGCTTTCACTCCTTTACTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGTAGTGTTGT 469
|||||||||||| || |||||||||||||||||||||||||||||||||| || |||||
Sbjct 300 TGCTTTCACTCCCTTGTTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGCAGCGTTGT 359
Query 470 TGAGCCTATTCGAAACATTGGAAG--A-AAGAATGTTGATACTTCTTACTTGGAGGCAGA 526
|||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 360 TGAGCCTATTCGAAACATTGGAAGAAAGAAGAATGTTGATACTTCTTACCTGGAGGCAGA 419
Query 527 ATGTTTCAAAATTGATCCAGCTAGCAAGAAGGTTTACTGCCGATCCAAACAAGGCCTTAG 586
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 420 ATGTTTCAAAATTGATCCAGCAAGCAAGAAAGTTTACTGCCGATCCAAACAAGGCCTTAG 479
Query 587 TTCAAATGGAAAGAAA-GAATTTTCTGTTGACTATGACTACCTTGTAATTGCTACTGGAG 645
|||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 480 TTCAAATGGAAA-AAAGGAATTTTCTGTTGACTATGACTATCTTGTAATTGCAACTGGAG 538
Query 646 CTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAGAACTGTCATTTTCTGAAAGAGG 705
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 CTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAAAACTGTCATTTTCTGAAAGAGG 598
Query 706 TTGAAGATGCTCAGAGAATCCGTAAAACTGTAATTGATTCCTTTGAGAAGGCAAGTCTAC 765
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 TTGAAGATGCTCAGAGAATCCGTAAAACTGTGATTGATTCCTTTGAGAAGGCAAGTCTAC 658
Query 766 CAGAACTAAGCGATGAAGAGAGAAAGAGAATCCTGCATTTTGTGGTTGTTGGTGGTGGGC 825
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGAACTAAGCGATGAAGAGCGAAAGAGAATCCTGCATTTTGTGGTTGTTGGTGGTGGGC 718
Query 826 CAACAGGTGTTGAGTTTGCCGCTGAGCTACATGATTTTGTTACTGAGGATCTAGTCAGTC 885
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 CAACAGGTGTTGAGTTTGCCGCTGAGCTGCATGATTTTGTTACTGAGGATCTAGTCAGTC 778
Query 886 TCTATCCTAGAGCCAAGGGTTCAGTGCGAATCACGCTTCTGGAGGCCGCAGACCACATCC 945
| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 779 TTTATCCTAGAGCCAAGGGTTCAGTACGAATCACACTTCTCGAGGCCGCAGACCACATCC 838
Query 946 TGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTTAGCAGAGATGGAA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTTAGCAGAGATGGAA 898
Query 1006 TTGATGTGAAACTTGGCTCGATGGTAACTAAAGTGAATGAGAAAGATATATCTGCTAAAA 1065
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGATGTGAAACTTGGCTCTATGGTAACTAAAGTGAATGAGAAAGATATATCTGCTAAAA 958
Query 1066 CCAAAGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTG 1125
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 CGAAAGGAGGAGAGGTTTCCTCTATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTG 1018
Query 1126 GAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGGGTAATAGACGAGCTC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 GAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGGGTAATAGACGTGCTC 1078
Query 1186 TGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATATATATGCCCTTGGTGATT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATATATATGCCCTTGGTGATT 1138
Query 1246 GCGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGCTATTTTTAGCAAAGCAG 1305
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GTGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGCTATTTTTAGCAAAGCAG 1198
Query 1306 ACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAGAAGCAATGGATGACATTT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAGAAGCAATGGATGACATTT 1258
Query 1366 GTGTTAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAACGTATGCGTGGCATTGCAG 1425
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTGTTAGATACCCTCAAGTTGAGCTCTACTTGAAGAGTAAACGTATGCGTGGCATTGCAG 1318
Query 1426 ATCTTCTTAAAGAAGCCGAAACTGATGATGTATCTAAGAATAACATTGAACTGAAGATCG 1485
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1319 ATCTTCTTAAAGAAGCCGAAACTGATGATGTATCCAAGAAGAACATCGAACTGAAGATCG 1378
Query 1486 AAGAGTTCAAATCGGCTCTATCTCAGGTTGACTCACAAGTGAAGTTTCTTCCAGCTACTG 1545
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1379 AAGAATTCAAATCAGCTCTTTCTCAGGTTGACTCACAAGTGAAGTTTCTTCCAGCTACAG 1438
Query 1546 CACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTAAATGCTTTGACCGTATGGAAGAGT 1605
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1439 CACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTAAATGCTTTGATCGCATGGAAGATT 1498
Query 1606 GTGAGAAGAGTCCAGAAGGTCCCATTAGGATGAGAGGAGAAGGTCGTCACCGTTTCCGCC 1665
| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 GCGAGAAGAATCCAGAAGGTCCCATTAGGATGAGAGGAGAAGGTCGTCATCGTTTCCGCC 1558
Query 1666 CCTTCAG 1672
|||||||
Sbjct 1559 CCTTCAG 1565
Score = 363 bits (196), Expect = 5e-99
Identities = 208/214 (97%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 1782 AGGTATAGGCATCTGGGACAATTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTT 1841
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 AGGTACAGACATTTGGGACAATTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTT 1623
Query 1842 CCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCC 1901
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1624 CCAGGAGATTGGGTTTCTATTGGACAAAGCAGCCAGTGGCTCTGGTATTCCGTCTACGCC 1683
Query 1902 AGTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTC 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AGTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTC 1743
Query 1962 ATCTTTGGTAGAGATTCCAGTAGCATCTGATTTT 1995
||||||||||| ||||||||||||||||||||||
Sbjct 1744 ATCTTTGGTAGGGATTCCAGTAGCATCTGATTTT 1777
> Ahg492734 jgi|Araly1|492734|fgenesh2_kg.7__2167__AT4G21490.1
Length=1650
Score = 1441 bits (780), Expect = 0.0
Identities = 1250/1472 (85%), Gaps = 51/1472 (3%)
Strand=Plus/Plus
Query 222 GGTGGTGGACTTATAG-CGTATTCTGAGGCAAACGCATCTTATGGAGCAAATGGTGGTGC 280
||||| |||||||||| | || ||||||||||| ||||| ||| ||| || ||
Sbjct 1 GGTGGAGGACTTATAGTC-TACTCTGAGGCAAATGCATCATAT--AGC-AA---CAATG- 52
Query 281 TGTTGTTGAAACTGGAACCAAG-AAGAAGAAGGTGGTGCTGCTCGGAACTGGATGGGCTG 339
| ||||||||||| |||| || ||||| || || ||| |||||||||||||||||||||
Sbjct 53 -G-TGTTGAAACTGAAACC-AGAAAGAAAAAAGTAGTGTTGCTCGGAACTGGATGGGCTG 109
Query 340 GAACTAGTTTCTTGAAGAATTTGAACAATTC-TCAATATGAGGTTCAGATTATATCGCCT 398
|| | ||||||||||||| | |||| || || || |||||||||||| |||||||||||
Sbjct 110 GAGCAAGTTTCTTGAAGACTCTGAATAACTCTTC-TTATGAGGTTCAGGTTATATCGCCT 168
Query 399 CGGAACTACTTTGCTTTCACTCCTTTACTACCTAGTGTTACTTGTGGAACTGTTGAAGCT 458
|| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 169 CGAAACTACTTTGCTTTCACTCCCTTGTTACCTAGTGTTACTTGCGGAACTGTTGAAGCT 228
Query 459 CGTAGTGTTGTTGAGCCTATTCGAAACATTGGAAGAAAGAATGTTGATACT-TCTTACTT 517
|| ||||||||||| ||||| || ||||||||||||||||||||||| | | |||| |||
Sbjct 229 CGCAGTGTTGTTGAACCTATCCGCAACATTGGAAGAAAGAATGTTGAGA-TGTCTTTCTT 287
Query 518 GGAGGCAGAATGT-TTCAAAATTGATCCAGC-TAGCAAGAAGGTTTACTGCCGATCCAAA 575
||||||||||||| || ||||||||||| | |||||||| |||||||| |||||||||
Sbjct 288 GGAGGCAGAATGTGTT-AAAATTGATCC-TCGAAGCAAGAAAGTTTACTGTCGATCCAAA 345
Query 576 CAAGGCCTTAGTTCAAATGGAAAGAAAGAATTTTCTGTTGACTATGACTACCTTGTAATT 635
|||||| | | ||| || || |||| ||||||| |||||||||||| ||||||||||||
Sbjct 346 CAAGGCGTGAATTCGAACGGGAAGAGAGAATTTGATGTTGACTATGATTACCTTGTAATT 405
Query 636 GCTACTGGAGCTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAGAACTGTCATTTT 695
||||||||||||||||| ||||| ||||| || || || ||||||||||||||||||||
Sbjct 406 GCTACTGGAGCTCAGTCAAACACATTTAATATTCCAGGGGTGGAGGAGAACTGTCATTTC 465
Query 696 CTGAAAGAGGTTGAAGATGCTCAGAGAATCCGTAAAACTGTAATTGATTCCTTTGAGAAG 755
|| ||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||
Sbjct 466 CTCAAAGAGGTTGAAGATGCACAGAGAATCCGTAGCACTGTCATTGATTCATTTGAGAAG 525
Query 756 GCAAGTCTACCAGAACTAAGCGATGAAGAGAGAAAGAGAATCCTGCATTTTGTGGTTGTT 815
|||||| |||| | ||||| ||| ||||||||||||||||| || |||||||| ||||||
Sbjct 526 GCAAGTTTACCGGGACTAAACGAAGAAGAGAGAAAGAGAATGCTACATTTTGTAGTTGTT 585
Query 816 GGTGGTGGGCCAACAGGTGTTGAGTTTGCCGCTGAGCTACATGATTTTGTT-ACTGAGGA 874
|||||||| ||||| |||||||||||||| ||||||| |||||||||||| || |||||
Sbjct 586 GGTGGTGGACCAACCGGTGTTGAGTTTGCTTCTGAGCTTCATGATTTTGTTAAC-GAGGA 644
Query 875 TCTAGTCAGTCTCTATCCTAGAGCCAAG-GGTTCAGTGCGA-ATCACGCTTCTGGAGGCC 932
| |||||| |||||||| | ||||||| || ||||| | ||||| || || |||||
Sbjct 645 TTTAGTCAAACTCTATCCCAAAGCCAAGAACTT-AGTGC-AGATCACTCTGCTAGAGGCT 702
Query 933 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTT 992
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 703 GCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCTGAAGAAAAGTTT 762
Query 993 AGC-AGAGATGGAATTGATGTGAAACTTGGCT-CGATGGTAA-CTAAAGTGAATGAGAAA 1049
| | |||||||| |||||||||||| |||| | | ||||| | ||||||||||| ||
Sbjct 763 A-CTAGAGATGGTATTGATGTGAAA-TTGGGTTCTATGGTGGTC-AAAGTGAATGATAAG 819
Query 1050 GATATATCTGCTAAAACCAAAGGAGGAGAGGTTTCCT-CGATTCCTTATGGAATGATTGT 1108
|| || |||||||||||||||||||||||||| || | | ||||||||||||||||| ||
Sbjct 820 GAAATTTCTGCTAAAACCAAAGGAGGAGAGGTCTC-TACTATTCCTTATGGAATGATCGT 878
Query 1109 CTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCA 1168
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 879 TTGGTCAACTGGTATTGGGACTCGTCCTGTGATCAAAGATTTTATGAAACAAATTGGTCA 938
Query 1169 GGGTAATAGACGAGCTCTGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATAT 1228
||| |||||||| ||| | || || |||||||||||||| || |||||| |||||| ||
Sbjct 939 GGGAAATAGACGTGCTTTAGCTACCGATGAATGGCTTCGTGTTGAAGGATGTGATAACAT 998
Query 1229 ATATGCCCTTGGTGATTGCGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGC 1288
|||||| ||||||||||||||||| || |||||| | |||||||||||||| | ||||
Sbjct 999 ATATGCACTTGGTGATTGCGCAACAATCAACCAGAGAAAAGTCATGGAAGACATAGCTGC 1058
Query 1289 TATTTTTA-GCAAAGCAGACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAG 1347
||| || | | |||||||| || || || || || |||||||| | ||||| || ||||
Sbjct 1059 TATATTCAAG-AAAGCAGATAAGGAAAATTCAGGAACACTGACAATGAAAGAATTTCAAG 1117
Query 1348 AAGCAATGGATGACATTTGTGTTAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAAC 1407
||| ||||| |||||| |||| |||||||||||||||| | ||||||||||||||||||
Sbjct 1118 AAGTAATGGGTGACATATGTGATAGATACCCTCAAGTGCAACTCTACTTGAAGAGTAAAG 1177
Query 1408 GTATGCGTGGCATTGCAGATCTTCTTAAAGAAGC-CGAAACTGATGA-TG-TATCTAAGA 1464
|||||| ||||||| | |||||||| |||||||| | || |||| || || | || || |
Sbjct 1178 GTATGCATGGCATTACCGATCTTCTAAAAGAAGCAC-AAGCTGA-GAATGGT-TCCAATA 1234
Query 1465 A-TAACATTGAACT-GAAGATCGAAGAG-TTCAAATCGGCTCTATCTCAGGTTGACTCAC 1521
| | | | ||||| || || ||||| || ||||| ||||| | ||| ||||||||||
Sbjct 1235 AGTC-CGTCGAACTCGAT-ATAGAAGAACTT-AAATCAGCTCTTTGTCAAGTTGACTCAC 1291
Query 1522 AAGTGAAGTTTCTTCCAGCTACTGCACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTA 1581
|||||||| ||||||||||||| | |||||| ||||| ||||||||| ||||||| || |
Sbjct 1292 AAGTGAAGCTTCTTCCAGCTACAGGACAGGTCGCTGCTCAGCAAGGTACTTACCTTGCAA 1351
Query 1582 AATGCTTTGACCGTATGGAAG-AGTGTGAGAAGAGTCCAGAAGGTCCCATTAGGATGAGA 1640
|||||||||| |||||||||| | || ||||||| ||| ||||||||||||||||| |||
Sbjct 1352 AATGCTTTGATCGTATGGAAGTA-TGCGAGAAGAATCCTGAAGGTCCCATTAGGATTAGA 1410
Query 1641 GGAGAAGGTCGTCACCGTTTCCGCCCCTTCAG 1672
|||||||| ||||| |||||||| ||||||||
Sbjct 1411 GGAGAAGGCCGTCATCGTTTCCGTCCCTTCAG 1442
> Ahg480917 jgi|Araly1|480917|fgenesh2_kg.3__3618__AT2G20800.1
Length=1790
Score = 141 bits (76), Expect = 2e-32
Identities = 153/190 (81%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 1803 TTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATT 1862
||||| || ||||||||||| || || |||||| |||| ||||| |||||||| || |||
Sbjct 1602 TTTGCTCCGCTGGGAGGGGAACAGACAGCAGCAGAACTGCCAGGGGATTGGGTCTCCATT 1661
Query 1863 GGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGTAAGCAAGTGAGCTGGCGT 1922
||||||||||||||||||||||||||||| ||||||||||| || | || ||||||||
Sbjct 1662 GGACACAGCAGCCAGTGGCTCTGGTACTCTGTCTACGCCAGCAAACTGGTAAGCTGGCGC 1721
Query 1923 ACGAG-AGTGCTTGTGGTTTCAGATTGGA-T-GAGGCGTTTCATCTTTGGTAGAGATTCC 1979
|| || | |||| || | || ||||||| | || || ||| ||||||| | || ||
Sbjct 1722 ACAAGGA-TGCTCGTCATCTCTGATTGGACTCGACGC-TTTG-TCTTTGGCCGTGACTCT 1778
Query 1980 AGTAGCATCT 1989
|| |||||||
Sbjct 1779 AGCAGCATCT 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5